G82950


Basic Information

Item Value
gene id G82950
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18832176 ~ 18838951 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU122932
CTGAGTttgaattcttttatttttgtaaggcCAGATTCTTGCATTCCAACTGTGGGTGTACATAAGGCTGACGCAAGATGAATCCAACGGTTACTTTCCACAAAATCAAAAGCTTTCGGATAAGATTTCTGACAATTGGGACATGCAGCTACCGCACAGAGGGGAATATAAAGCGCTGTGtacacaaaacaacagtggCAGTGATGAAAACCTGCAAGCGTTTCGAGGCTATCCGAATAGAAGGATCGGAAATGCTTTgttgcaaagaaacaaaaaggatACAAACAAAACGCCTCCTCGCGGTCCCGCCCCCCgaaatacagaataaatatattttcgattattattattattttttttaaattatgcatggcttgaaaacataattaaaaaaagtattgacGTCAGTTTAAGTATATCACAAATAAGCAATGGGAATATATTGCGTCTCTAAAATACAGCTACAAACATATCACCTCAACTGACTTGTTAAAAAAGGTGTCTCAAAACATTTTGGGTGTAAAACACATTGTGGATCTTTGACATGTTGTTGAAATCagctgaatatataaacatctgAACAAGTTAGTACAATCATGTCAGTTGGCCTACACTCCAAAAGAAACGAAGTCTATGCACAGTTATGTACcattaatgtatttacaataCACTGAAGCAGCGCCATACGGATTTGCATTGAACGGGGACACGACGAGCAATATTCCTTATCATCTCACACAACATCTTCTACAAATGGTACTCCATATTGCTTAGAAACATTTAGGAATGAATTTCAGACGTTTCACTAATTTTTTCTCCCCCTCCGAAAAAACATCAAACCGTGTCGATTCTCATTTTACGTTCGGCTAATATacgcttttttgtttttgtcatctgaacagagatttgtgtttttttttgtttgatttgtatttGAAGTTGGTCCCTTATTTGTCATGGAACATGACGTTAACGACATCCAGACATGTACGAGTGATGCACGGTGCTGTACATGCATCATTTTAGGCCACGATAAACGCGTCTGACCGAATTGTCCACACCTAATTGTCTCCAGCAGGATCTAGTCGTCTTCCTCATCGCTGTCCTTCATGGATATGCCTTGCATCCCTCCCTCTCTTACAGATGCAGTAGCCTCTTCTAGAATCAGCCTGTTTCTCACCGTCTCATACATCTTGCTGTTCAGAGTAGAGTCCAACACACCTTGTAGTCGGAAATCACGATacttttCTTTACAATTCTGATGAGGATTTTTAGCTGATATACATGTAACTGCAGGTCCATACGGTCTGTCAGCCAGGTGCCCAGGAGGTTCATTGTGCTGGTGTACCATTGCTGAAACACAAATACATTGTTCTCCAGcaaagacagacacacatataaatgctgccacacacaaacacataggaaaacaaaaaaaacataggatctacaaaagacacaaacacaagtgTAGAGCAGATTATGTGAATAAAAATCCTTTCAGTACAAGATCTAAAAATACTCACCAATCTGATCTAGCACAACTTTAAATCAGCAATGACAAAGATGGACAACctatacactaccagtcaaaagttttgtAAGATTTTGGcctcaaaaactttttttttatcacaatttGTTTCTGCTTAATAATTGTGTGAAAACGGTGACACACCCAACTTGAAATATTTGGCGTAAATAggattaaaaactaataaaataacttttattatactttcgtttagcaaattaaaatgatcaaaaatgacattacagACTTTTATCATGTCACAGCGGATTTTTAGTCTAAATAAACGCTGGCCTTTTGAATTTAGATCAAGCCACAAATATATCAAACAGCAAACAAAACCTTGtttcaatattgaaaataataagaaatgtttcttgagcatcatttttacatattaaaatgatttctgaaggatcatctAACACTGAAAgtaaatcaaatacataaaaaatatattttatataaaacagctattttaaatcataataatacttCACTATATTACTGTTCTGTATTTTAGTATGAAACGAATACAGCATTAGTgagcataaaatgttttaaaatgttaaaaatgacaaaaatacagaaaatctTAATTATTCACTTCCGACCGGTAGGAGTTTTCTTCTGCTAAATTTGGCATCATGTAAACTATTTTCACTTGTAGAGGGTTATGGAGAAAAATGACTGGCAGAACGGAGCTTAAAGAGACGCTGCGAGCAAATCGGTGACATTACAAGGAGGGCTGTTCATAAAAGAGGTCCCAACACGCTCTGCCTTGGAGAAAGTCCTTCTGTCACAGTTTCAGATCCCATCATCTGTCTCCTGTGCTGCTTTTGGACACTGATCATGAGAGATGTTGCCCATGTTAAGCCAGCCACAATCCTGCCCTCAGCCTGTGCTTCAGACGGTGGCACTTTGTCACATTGAGGGAGAAACATCCATCATTCCCAGCGGACATGTTGTCTTTACCGCAGTCACAATGAGCTCGCTAATGTAGCTGTGGCTCAGggtcttattttttttacgaGACTTCCTCTCTCTTAGTCTTAGAGTGTTGTTCTCTATTTCTACTCAGTGAAACTCACTGAACTCAAAGCACCTCCTGAATAGCCAGTACACTTAGCTTTTGGGCTACAGATGTTGGACCGTGGGGAAGATCTCGTTTGAAGTCTAATTGATTAGTTATGATCGAGCTGGTCTGATGGTAATCTGAGCTGACTGAGTCTCAACGGTTTAGGAGCTGAGCAAATCGAGCCGGAGACACAGGAGATGTGTCTTGGGTAACTGCAGCACACTTGACAGTTTACTTTTTATAGATCTTACATGCAAAAACCACTTTGCACTCTGCTTGAAAAAGCCTTACACTTCTGATGGTgatgatctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaacaaggaaACTTGCACCTAATAAACAATACACAATTTGCTGAGCAAATTTTCAGTGGTTCCACCAATTTAACACATTGCAATTCATTGGTGTTTAAGTAGTACACTGGCAAAATTATGCCACTAAGGTGTGCCCAGATAAATCAAATGGGCGTTTTTGATTTGATCTGAGCGGCTGAGCTTAGTGGCTCGCCCCTATAGTAGTGAATCAGAGCTTGGTGTTGCTCTGTGAGGGCTGGTGCTCTGTGCCTGTGAAAGATTGGGCAGCCGGGCCGCGATGGACCCCCACAGGGAGGCCAGACCTGGAGCAactgctctctctcacactcagtCTTTCTCTCATGATCACTCAGTTTCTTCTACATTTGTTCCTATAATAGTGTGACCTCTCCGTCCTCTATCATTTTAAAAGGAGTCACAGAGAAGTAAAAATACCGTCATCATTTACTAGAATCAAGTCaatctaaacctgtatgactgactttcttctgtggagcatgAAAGAATacagttttgtatattttaatgagtAGTTTGAagaattaattttgttttgtctatACTTTGAAAGTCAATGGAGTCTGAAAACAATACCAGTATAGACAATCATTGTatagacaaaacatttttcttcttttatgttccacaaaacataaaagttttattttctttctttaaactcatagcaaaacataaaagacataatagacatttattgaaaatgctgtaataataatttaagaattcattcaatttaattttgtttctaCTGTTGGCGCCAAATCAGACGTTGAAATAGAATTACGAAGccatcaaaaacatacaaagtgTTCTGTTTGAAATTTgattctaaaattattattttctcaagCTCCTATGTTTGCATTTAGTTAAATCGCTATGATGGCAATCTAAAGAACCtgccattaaagtgaaattactgGACCTACACATAGGACTCTGTTAAGAATGCTAATTTCTTACTGGGAAATTTCTTATGGCACTCAAAAGCTTTTGCAACTAAACACTTCATATATTCATAAAGTATATTCTACTAAATCAAAATTTTGAACTCGCGGAAGACTCGTCCAGTAAGACCGCGTCCTCTATGGTCTTGGTTGTGAAATGAACAGTGCTGGCAGTGGGACATTGTTCTGCTGTCAGCAGAGAAACAGAAGACTCTCCGAGAGCGTATTATGTACTGTGGCACTTTTTGGATATTGAGCAGCGGGAAGCTGGCAATAGCTGCTAGCCAAAACAGGAGTATCATGACTCTGAATGCATAATGAAAGAAGCGGAtatgggagagaaaaaaaaaaaatctgtgatcATCTAACGAGTTCCATCTGATATTGGAAAGCGCGAAGGGCTgcgtgtacatgcatgtgtgtgtgttggacgCGTACGTTATGGTTACCGATACAACACACATGAACATCTGCAGGGCCCCCACACCTCTAGCGGGGAGCGCTGAAAGGCTGAGCGACCTCCTGCCCCCTGCCACACCACGCACATGCACAAGCCGCGCTCCTAAGCTTGCGTTCACACTCTCGTCTTTGACATGTTACAGGAAGCCATAGCGCCTAGCAGGGGGGCAACAAACAGAATTCAGTGCAAGGTTGCACATCCATCCACCCCCGTcacagaagcacacacacacactcgctcgcaACTCGCTTTTATCGAATCCCGAGGCACCTGAAGGCTAGCGGCTCCTATGTGAGGACCAGAGGAAAGAAAGAGCTGGTAAGGGCCGAGCTCGGATTAGAAAAAACACACTCTTACAAAAGCAGGAATGCCGAGGAGGGGGCGGGGGCTCGGTGGGGGTAATGGGGATTACAAGCAACCTGTGACTCTGCCTCTTTCTGCCCTTGCTGGTGGTAGTGgctctgtaaatgtgtgtgtgcgccacTCGGCCTGCTCTCGGAGGCCTAGGCTGTTTGAGAAGCGCTCCTGCTGGGACCCAGCTGTGTCTGCAATTAGCAGTAGGGATGGAATGATGATGGTTGTTAGCGCTGATGTTAATGCAAAGCGACAGGCCGGTGGAGATGAAAACAGGCCTCCCCGTGCTCCCGGTCCTGTCCGCGCTCCTTGCGAATCAGAATCGAGAAAATACCCTAAACAAAAAACACGAAAATCGAACGTCCAACCTTTTTCCTGGTACTCTTTGAGTCTTTGTCTGCGCTAAATAGAGCCGTCTCTCACAGGCCAGCGGGTCGTAAGGCGCTCGTCCATCTTGTTGGCCAGCGAGTGAATCGGGCCCCTTGCCGGGCCAGATAGGGAGGCCCCGGGGGCCGAGGAGTCTTTAAATCGGACTACAAGACATTATGCACTTAGGACAAAAGCTTGGGGTAATCCTACCTGCTTGCTGTTCACGACCGCCACCGGCCCGTTATTGTACGCCTCATCCCTCCTGAGAGGAGGTCCATTGATGACTGAACTCAATTACCATGGTAACTCACACCGGTGACCCCACGCCTCCCGGCGCTCGCTATCTCTCCACCGCGGGACCCCGCGAcctcacagaaaaaaagttgtgtAGGAAATACACGACCCCAAACGCAGTCCTCCAACGCGCTGCTGCGTTAGCgcgctctttctcttttctctttctctcactctttctctccagAAATAGGTGCTTCTGAATGGTGggattgaaaataaaatttcaagCTCAGCAAGCGAAAGGGCTTCAAACTGCTCACGATTGTGTTGTGGATACAAAGAGAACCCTGCTCTGGATTTGCACGCCTCACCGGATCCTTAAGTGGAACAAGCCCTTACTGTTTCTGAGCAAGCTCTGCTACACTTTTAAGTGTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122932 True 5780 lncRNA 0.42 3 18832176 18838951

Neighbor

gene id symbol gene type direction distance location
nampt2 namptb,LOC107728616,LOC107696850,LOC107739284,LOC107590159,LOC107550476,LOC108435731 coding downstream 85137 18730846 ~ 18747039 (-)
synpra synpr,si:dkey-30j16.3,LOC107696822,LOC107739311,LOC107656028,LOC107728645 coding downstream 107177 18704131 ~ 18724999 (-)
LOC122354102 atxn7,LOC107696847,LOC107739287,LOC107550752,LOC107728624,LOC107590160,LOC107656031 coding downstream 135485 18667911 ~ 18696691 (-)
slc2a9l1 LOC107728625,LOC107590179,LOC107655953 coding downstream 171086 18655864 ~ 18661090 (-)
rhol rhol,LOC107696845,LOC107717962,LOC107551427 coding downstream 322778 18508083 ~ 18509398 (-)
c11h3orf14 LOC107728644,LOC107556316,LOC107656026,LOC107590156,LOC107739282 coding upstream 17234 18856185 ~ 18858221 (-)
ogfr2 NA coding upstream 20674 18859625 ~ 18863328 (-)
LOC122354160 NA coding upstream 84723 18923674 ~ 18925249 (-)
LOC122353790 NA coding upstream 96144 18935095 ~ 18938668 (-)
LOC122353791 NA coding upstream 101682 18940633 ~ 18943281 (-)
G82934 NA non-coding downstream 132611 18699252 ~ 18699565 (-)
G82932 psmd6,LOC107696848 non-coding downstream 167610 18663421 ~ 18664566 (-)
G82918 NA non-coding downstream 222117 18609724 ~ 18610059 (-)
G82753 LOC107600292,LOC107656050,LOC107746889 non-coding downstream 699046 18125988 ~ 18133130 (-)
LOC122353822 NA non-coding downstream 709939 18113348 ~ 18122237 (-)
G83012 zgc:113307,LOC107655951,LOC107590174,LOC107736072,LOC107675829,LOC107556012,LOC107739306,LOC107728600 non-coding upstream 374001 19212952 ~ 19213174 (-)
G83013 NA non-coding upstream 378915 19217866 ~ 19218080 (-)
G83190 NA non-coding upstream 1122132 19961083 ~ 19962665 (-)
G83198 LOC107727852,LOC107739267,LOC107656005,LOC107556574,LOC107603068,LOC107675837 non-coding upstream 1154843 19993794 ~ 20007531 (-)
G83315 NA non-coding upstream 1424031 20262982 ~ 20263201 (-)
trnav-aac_25 NA other downstream 260953 18571151 ~ 18571223 (-)
trnav-aac_24 NA other downstream 261728 18570376 ~ 18570448 (-)
fgd5a LOC107728634,LOC107600300,LOC107656043,LOC107696838,LOC107746894 other downstream 600655 18197829 ~ 18231521 (-)
mustn1b mustn1,mstn1,LOC103145767 other downstream 694788 18135884 ~ 18137388 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other downstream 784053 18008365 ~ 18048123 (-)
G83230 golt1a,got1a,LOC107727772 other upstream 1328354 20167305 ~ 20171305 (-)
G83592 LOC107727835,LOC107561779,LOC107685696,LOC107600308 other upstream 1990845 20829796 ~ 20839292 (-)
kaznb kaznb,LOC107597004,LOC107749453,LOC107565459,LOC107727805,LOC107685722,LOC108424680,LOC105028825,LOC106582810,LOC102784869 other upstream 2385316 21224267 ~ 21349112 (-)
efcc1 efcc1,LOC107727832,LOC107685653,LOC107749439,LOC107551117,LOC107581369 other upstream 2719073 21558024 ~ 21576331 (-)
G83871 fam120a,LOC107685640,LOC107581418,LOC107749502,LOC107691381,LOC107556189 other upstream 3179419 22018370 ~ 22021101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G250230 NA unknown CI01000058 null 3688643 ~ 3696711 (-)