CI01000000_16468276_16479177


Basic Information

Item Value
gene id CI01000000_16468276_16479177
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16467489 ~ 16481059 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_16468276_16479177.mRNA
GCATATAAAGGGAGGAGAGCTGGCTCATTAATTTTAACAGGTGCTTTTTCAAAGCATCCACATGTACTGTTGTCGCACACTTAAGATGGCTATGAAACCACTCCCTGACCGCAACCAGCCTTAACCTTGACTGATGGCACAACCGCCTCTGGCAATCACATTAAAAGCCACATTTGTTCATATTCGCATAGGGAACCACATTTTGCAATCTCCTTAATTTAGCCAGACTGATAAATCGTAGGGCTGGTGCTTTACTGCCACAGCGTGTTATGTCCCCAGCATTGACTGCCCTTGAAATGAGCACTGTCCTATTTCAAAAATAATACATGAGATGCGTGTTTTGAGGTTGCAAAGACCTCTGAGTACGACCGCTTGGGGTGATCACTGGGAATCTAAAAATCTGACGCAGGGGCCCACTATAGGCGGCCCATCTGATGTCATTAGGAGCCAGTGATGTTCTAGTTATATTTGCCTATCTAGGAATAGAGCTACATTAACTGTTTTCCTGTAATGCAAAGACTTTAGAAGGATTTCTTGTCAGTTACATCATTGTTGAAAGTTTACTGATTTGTACAACGTTAGTCCACCATATTTAAAATTTTCAAGGGACCCCCTTTCTAAATTTAAAAAAAAAAAAGAGCTACATTGTTTTCACACTAAGAAAAGGCAGGACACCAAGGCAAGGCAATTACTTCTACCAGTGCAAATTAGAATCAGCTGGGTTAGTGTATGTTGATAGGTTAGAAGAAGGCTTACCCACCTCTGAACGCAAGTATACAAACATCTCATGATTGGCAGGGGCAAACAGCTCTCCCAAGGGCTTCGCAACAAGATTGTTACACTACATAACAACGGCACTGGTTACCGACGCATTTCACAACTCATTAATGTTCCTGTAAGCACCAATGGGGCCATTATCTGCAAGCAGAAGGAACATCACTTCACCATCAACCGGCCACACATAGGAGCTCCTCGCAGGATTTCTGACCAGGGACTCAAAAGTTTAGTCAGAAGAGTAGCCCAAGAGCCAAAGAGTGCTCGGAAAGAGCTCCAGAAAGACTTGGAGGCAGCAGCAGAATCAATGATCAGGGAGAGTTCCTGCAGTGTGTCAAGGTGGAGAGATTATGACAGGCTACAGCCCAGCTGTATTCCCAGAGGGCATTACACGCAGATGCAGCAAGCAGGAAGTCGGAATGAACAAAAGCCGGAGCCGTGCCCCACAAAATCAAGTCGGAATCATCACACAGCACTTGATGAGTCACATGGCAGGATACATGCTTCAGTTGCAAGCCATATCCTGCCTCACATCATGATGAATTGTGGTATACGGCAGGCCAAGATTAATGCAATTCACGGAACAGCTTTTCTGGTGACCCTGTTATCGATACCAAGGACTCACTCCAAATTATTCAACATCTTCGCTCACATTAGTTTTGTGGCCAAGGCTGTCGGAGTGAGAGACGGCAAATTCTCAGCGCTAACTACAGAGATGTTGTAAATAAAGGTCTGAGGACATATTGGAGAGGGAACTGCCCCCCGCCCTCATCCCCCGCCCGCCCCGATCGCTGCACTGCTGCATTCAATCTATGTAGGTCTGTACTGCAGCTAAATTTACATTCTATGTGCTGTGACTGTCACAGGCTCTTGCCTCCATTCAGGTTTATTGCCATCAGATTCTCTGCTGAACATGCTGCTGCACGAATATACTTCATTTGAAAACTTTTTTACTTAATGTCAATCTGTCAGCGTGTTCCCTATTCCCCAAATGCGCATTCTGGAAATACTGCCTGAGTCGGCCACATTCAGCTCACCCATTCTTTCTTCAAGACTACTTTTGCCCAAGACTAAGGGGATACAACGTTTCTGTAAAATTGTGAAAATACATATTCATGATGTTAAAACAAGCCAGATGTTTGTTGTATTACGTGACTTGGGCAAAAACATTATCACAACCTTTTCACAGCATGCAAATTATTTTACAATGTGAAAAATATTTTCACTGCATTTTTTTAAATGTCTTAAACAGATTTCAAACCTAGATAAAACATCCCACAAATATTGCAGGTTGGTCTGGATTTATTGCTGTAGTAAAAAACATGCCGTTTTTGTGCATTTTTTCTGCTCCCGGCCCCCTTTCCAGAAGAGGGTGGAGCTTTAACAGCTCGCTCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACACAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGTTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTATAACTTTTAGAATGAAACTGGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCCACTAGCATCATGTTGATCTTTTGTGCAAATCCAGTGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCATAAATGACGGCATGGTAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCTCGCCCCCTTTGTTGCGTGTTCTCGGGGGCAAATTTTAGGGTTAGTGATGTCACCAACCAGGGAAGAAGCTTGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAACAGAGAATTCTTTAAAAAAATATCTCCCATTGCATTGAACTTTGAGCGTCGTAACTTTGCAGATTTTTGTTCTTTGTTGTTTGTGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAATCACCCCTTTAAGGGTAAGGAGAGGGTTATGACTCAATTTTCAGACAGGAATGTTGTTCTAAGATCAACATAGTATGTTAATCAACAAACATGTCTTAAGCCCTGAGTATACTTTTTTTGTGTGTGTGTACGCACAGTCGAATGCACAGCCTTGGAAAGTATACTTCATTTGATGCATACGCAGTTTTGAGCAATCTCTCGCCATGAGTTACAACCCATGTAAACATCTTTGTATTCTTTCATGCTAAAGTTGTACAAATGAGGGTACTTTCTAACCTCTTCACACAATCTCTCGTCTATGTAGGCCTCCATCGTCGCTGTAGCTTGCATGTGTTCCGGTCTGTTCTGTTTATGCAGTTTTTCTTTGACTATCTTGTGAATCGACGCCCCCAGGGCACGGTTGCCACCTTGTGGATAAACTAATTACTGCAACAAAAAAAAAAAAAGCAACCTGTGCGTACAAAGTGTGCGCAATTACAAAAATCTGGCGGTGCACGTACAGTATGTGCGTCATGCATACGCTGACCCTTGCATATGTGTAAAAAGTGAAGAATACTTTGGGCTTTACTTGGCAAAATCACAATGACCCCAAAATTTGCGTTGAAAAGA

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_16468276_16479177.mRNA True 3380 mRNA 0.43 4 16467489 16481059

Neighbor

gene id symbol gene type direction distance location
CI01000000_16375958_16382103 G3BP1 coding upstream 84931 16373958 ~ 16382558 (+)
CI01000000_16362843_16368520 SPARC coding upstream 98969 16362691 ~ 16368520 (+)
CI01000000_16339900_16340277 ATOX1 coding upstream 127108 16339900 ~ 16340381 (+)
CI01000000_16282545_16293288 MTNR1AL coding upstream 172824 16282126 ~ 16294665 (+)
CI01000000_16226281_16275284 FAT2 coding upstream 192012 16226281 ~ 16275477 (+)
CI01000000_16573665_16580545 SLC25A48 coding downstream 92606 16573665 ~ 16580958 (+)
CI01000000_16611284_16612778 CPLX2, CPLX1 coding downstream 130225 16611284 ~ 16613885 (+)
CI01000000_16676128_16679215 SLC26A2 coding downstream 194977 16676036 ~ 16679240 (+)
CI01000000_16781396_16802242 HTR4 coding downstream 300337 16781396 ~ 16802418 (+)
CI01000000_16835058_16848950 NA coding downstream 353861 16834920 ~ 16849092 (+)
G10380 NA non-coding upstream 40314 16423358 ~ 16427175 (+)
G10364 NA non-coding upstream 80764 16386342 ~ 16386725 (+)
G10360 NA non-coding upstream 111551 16355733 ~ 16355938 (+)
G10359 NA non-coding upstream 112291 16354892 ~ 16355198 (+)
G10358 NA non-coding upstream 112657 16354572 ~ 16354832 (+)
G10869 NA non-coding downstream 43526 16524585 ~ 16524785 (+)
G10878 NA non-coding downstream 54209 16535268 ~ 16535522 (+)
G10879 NA non-coding downstream 54572 16535631 ~ 16535977 (+)
G10891 NA non-coding downstream 75067 16556126 ~ 16556496 (+)
G10893 NA non-coding downstream 78156 16559215 ~ 16559484 (+)
G10201 NA other upstream 536927 15930266 ~ 15930562 (+)
G9201 NA other upstream 2232548 14215024 ~ 14234941 (+)
G7522 NA other upstream 4288481 12178369 ~ 12179008 (+)
G7514 NA other upstream 4330481 12136522 ~ 12137008 (+)
G7153 NA other upstream 5221856 11244457 ~ 11245633 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 858095 17339154 ~ 17346200 (+)
G11465 NA other downstream 1402894 17883953 ~ 17887462 (+)
G11521 NA other downstream 1551680 18032739 ~ 18164112 (+)
G11801 NA other downstream 2199808 18674116 ~ 18745376 (+)

Expression


Co-expression Network