gamt (gamt,LOC107747770,LOC107597217,LOC107685360,LOC107680536,LOC107553529,LOC107757934)


Basic Information

Item Value
gene id gamt
gene name gamt,LOC107747770,LOC107597217,LOC107685360,LOC107680536,LOC107553529,LOC107757934
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13227645 ~ 13231143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251277.1
tttaaatatataacgcTCGAGGCACGCCAGAGACGACCTCTTCGGCCGCTGCGCGTCGATACGACACCCGCGCCACATCTGTCGACGTCCAGCAGTCCACCATGACCACCGCTCAGCCGATCTTCTCGAAGGGAGAAAACTGCAAGCAAGTGTGGCACGGCGCGAGCGCTGACTACAATGAGACCGACACGCACTTGGAGATCATGGGGAAACCCGTCATGGAGCGCTGGGAAACTCCATACATGCACTCTCTTGCAACAGTTGCAGCGTCCAAAGGTGGAAGGGTGCTGGAGATTGGCTTTGGAATGGCCATAGCGGCCACTAAAGTGGAGTCCTTCCCCATCGAGGAGCATTGGATCATTGAGTGCAACGATGGTGTTTTCCAGAGGCTGCAGGAATGGGCCAAAAGTCAGCCACATAAAGTCGTTCCTCTGAAAGGCCTGTGGGAAGAAGTGGTGCCTACCCTGCCCGACAATCACTTCGACgGTATTCTTTACGACACATATCCTCTGTCGGAGGAGACCTGGCACACGCACCAGTTCAACTTTATCAAGGGTCATGCTAACAGACTGCTGAAGCCCGGCGGCGTGCTCACGTACTGTAACCTCACTTCCTGGGGCGAGCTGCTGAAAAGCAAATACAACGACATCGACAAAATGTTCCAAGAAACACAAGTTCCCCACCTGGCGGAAGCGGGATTCAACAAGGAGAAGATCAGCACCACGCTGATGGACATCAGTCCTCCCAGTGAATGCAaatactattcctttaataagaTGATCACGCCAACTATTATTAAAGAATGAGGGAAAAACTGACTGTGTATAAAAGATAAATCTGTCAagtgtttttgaaatgaaatcataTGATTCGTTTGTAAGAGTCAATTGCATTTAATTCTCGCAAAATGACTGGGAAACGTTTTGTAAAATGCCTAGTTTGTGCCACTCAAagccttttatttcttttatttttgattacgCTACATCGAAATAAACactacataattata

Function

symbol description
gamt Predicted to enable guanidinoacetate N-methyltransferase activity. Predicted to be involved in creatine biosynthetic process. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and yolk. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and guanidinoacetate methyltransferase deficiency. Orthologous to human GAMT (guanidinoacetate N-methyltransferase).

NR:

description
guanidinoacetate N-methyltransferase

GO:

id name namespace
GO:0006601 creatine biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0030731 guanidinoacetate N-methyltransferase activity molecular_function

KEGG:

id description
K00542 GAMT; guanidinoacetate N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251277.1 True 1012 mRNA 0.48 6 13227645 13231143

Neighbor

gene id symbol gene type direction distance location
LOC122353867 sult6b1,LOC107680496,LOC107552400,LOC107744587,LOC107713000,LOC107557424,LOC107657965 coding downstream 227519 12995247 ~ 13000126 (-)
slc29a1b slc29a1b,LOC107712971,LOC107741993,LOC107552398,LOC107680494,LOC107557422 coding downstream 245805 12967576 ~ 12981840 (-)
dennd6aa dennd6a,LOC107680547,LOC107657973,LOC107597203,LOC107712949 coding downstream 460979 12747106 ~ 12766666 (-)
LOC122353868 NA coding downstream 483500 12738000 ~ 12744145 (-)
LOC122353875 arf4b,LOC107597172,LOC107557402,LOC107747513,LOC107680530,LOC107712993,LOC107657960 coding downstream 495528 12729331 ~ 12732117 (-)
abhd8b abhd8b,abhd8,LOC107747334,LOC107578087,LOC107680465 coding upstream 25494 13256637 ~ 13261242 (-)
dda1 dda1,LOC107685208,LOC105913185 coding upstream 30241 13261384 ~ 13264933 (-)
ano8b ano8,ano8b,LOC107685197,LOC107680545,LOC107597162,LOC107747324 coding upstream 35691 13266834 ~ 13287916 (-)
plvapb plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946 coding upstream 71202 13302345 ~ 13307142 (-)
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding upstream 79179 13310322 ~ 13315638 (-)
G81608 NA non-coding downstream 2784 13222525 ~ 13224861 (-)
G81605 NA non-coding downstream 6981 13218964 ~ 13220664 (-)
G81578 LOC107747780 non-coding downstream 66335 13160173 ~ 13161310 (-)
G81540 NA non-coding downstream 179495 13047571 ~ 13048150 (-)
G81528 NA non-coding downstream 229028 12965796 ~ 12998617 (-)
G81611 NA non-coding upstream 2658 13233801 ~ 13246273 (-)
G81609 rps15,LOC107680474,LOC107685215,LOC107578086 non-coding upstream 22267 13253410 ~ 13313479 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding upstream 89023 13320166 ~ 13322021 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding upstream 92536 13323679 ~ 13325131 (-)
G81624 NA non-coding upstream 98261 13329404 ~ 13330007 (-)
G81512 NA other downstream 169764 12817753 ~ 13057881 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other downstream 237688 12984373 ~ 12989957 (-)
LOC122353859 NA other downstream 262012 12956861 ~ 12965633 (-)
G81523 NA other downstream 331515 12890281 ~ 12896130 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 560057 12663831 ~ 12667588 (-)
ccl25b LOC107680477 other upstream 118793 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other upstream 135424 13366567 ~ 13369997 (-)
G81663 NA other upstream 341588 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 375129 13606272 ~ 13609604 (-)
G81650 NA other upstream 466956 13698099 ~ 13699958 (-)

Expression


Co-expression Network