ctdspl3 (ctdspl3,LOC107747402,LOC107680535,LOC107553546,LOC107597167)


Basic Information

Item Value
gene id ctdspl3
gene name ctdspl3,LOC107747402,LOC107680535,LOC107553546,LOC107597167
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13214308 ~ 13220680 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251278.1
TTTTTTCATCAGTTTAAACTGAGGTCAGTCCGTCTGGAAACGGCGAGACGGAACTAATGGACTGAATTAATGGAGATAAACGCGACGCTTGAACATTACTCCCGAGAGTTTAAAGTCCACATCTCCGCTGAATACGCGTTTTATTCGGAGCTCCAGCAAAATGAGACTGCGCTcgagaaatattttaaatgaagtgcCGACGACGCCGTGCCGCCGCCGTCGAGCAGCACCGGAGACCCCGGGACCGCAGACACCGCCGCTCCAGACCCAGGATGAAGTTAAAGTTCTTCAAGACCGCTTGAATCTGGACCCTGATGATGTCCCAACAGTAGCAAAACGTCCACGAAGGAGGAGAAAAGCTTTATCAACTGTTGACAATAAAGAGTCTGATTTCAAGACCCCAGTCCGTCACCTCCGGGAAAGGCATTCGTCGTTGAATCCTGCTGCTAGAAGCCTTTATTCTCCCGTGGTGCACTTTCTCACACCTCCACGAGACAGAGAGCAGCCAAACACAAGTCCCATGTTCAGTCCTGAACACTGTGTGTTTGGCTACAGTGCTGCCAGCCCTCTTTCAGAGGATGAAGAGAATGAAGAAGTGTTCAGCCCTTTTACGTTTATTAAGAACATTCCCAATCGTTCACAACAGTCCAGGCCGGTCTCAGCGGTGCGGGACATCCCACCAAAGACGAGGAGCACGCCTGCTGCTACCCTGGTGCTCGATCTGGACGAAACCCTGGTGTTCAGTTCACTGAATGTGATTCATGATGCAGAATACACCTTCAGTACCCGCTTTCAAGATCATAAGTACAAGGTCTATGTGATTCTCAGACCATATGTCAAAGAGTTTCTGCAAGCCATGACCAAACATTTTGAGATGTTTGTCTACACGTCTGCAAAAAAGGAATATGCAGAGAAGATTGTGGATATATTGGACCCTACAAAAAAGCTCTTTAGGCACCGCTTGTATCAGGACGATTGTGCCTGTGTGCTCGGACACTACATTAAAGACTTGAGCGTCCTGGAGAGGGACCTGTCAAAGACGGTCATCCTGGACAACGCCCCGCACACCTTCCCATATCACCTGATGAATATGATTCCCATAAAAAGCTGGAATGGAGCTCAAGAGGACCGTGAGCTGCAAAAGCTTGTTCCTTACATGGAGAAACTAGTGCATGCGgaTGACatcagaagtgttttaaagaagAGAACCGATCACTTCCACAGGCTGCTTTCTGAAGACTAAGCCCTGTATTAAATGTAAAGCCGTGCTCCATGCTGCATACAAGGCCTATGTCTAGTATGGTTTTATACCCTGGCGTAGAAATAGTGCTTCAGCGACGCAGAATACTCTTCAGCTGTAATTATCCCGGTCAGCTGGTCTTCTGACCCTTCTTGATGAATAGGACTAGATTCTTACCTTTACCTTACCTAATTTATTGATAAGCCTTGAGATATTTGTACAGGTTTGTGCCGTTGGAAGAATGCTTTCACACTGTAATCTGCTCAAATTCATTTCAATACGTGTTGTACTCGGAACTCTATTTTTAAAGGATGCTTGGGCTAGTTTTCACAATAACCAATAAAgcaaggaaaaaaatgtttctta

Function

symbol description
ctdspl3 Predicted to enable phosphatase activity.

NR:

description
CTD small phosphatase-like protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251278.1 True 1606 mRNA 0.46 11 13214308 13220680

Neighbor

gene id symbol gene type direction distance location
LOC122353677 LOC107747780 coding upstream 52395 13160142 ~ 13161913 (+)
LOC122353835 flnb,LOC107680511,LOC107657976,LOC107712990 coding upstream 55438 12824930 ~ 13158870 (+)
LOC122353891 slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 coding upstream 158432 13034637 ~ 13055876 (+)
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding upstream 258942 12927330 ~ 12955366 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding upstream 476668 12732754 ~ 12737640 (+)
ndufs7 ndufs7,LOC107597168,LOC107680537,LOC107747413,LOC107685366,LOC107553547 coding downstream 1159 13221839 ~ 13226883 (+)
dazap1 dazap1,LOC107680526,LOC107757952,LOC107747374,LOC107685225 coding downstream 13085 13233765 ~ 13252149 (+)
rps15 rps15,rig,LOC107685215,LOC107578086 coding downstream 32671 13253351 ~ 13255161 (+)
ushbp1 ushbp1,LOC107747291,LOC107680560,LOC107685353 coding downstream 95900 13316580 ~ 13329122 (+)
nr2f6b nr2f6b,LOC107680506,LOC107747262 coding downstream 115439 13336119 ~ 13346199 (+)
LOC122353896 NA non-coding upstream 195173 12977589 ~ 13019135 (+)
G81424 LOC107680494,LOC107574810 non-coding upstream 238153 12965771 ~ 12976155 (+)
G81420 NA non-coding upstream 290137 12865979 ~ 12924171 (+)
G81448 NA non-coding downstream 89641 13310321 ~ 13312912 (+)
G81454 NA non-coding downstream 93882 13314562 ~ 13315699 (+)
G81458 NA non-coding downstream 129254 13349934 ~ 13393135 (+)
G81468 LOC107747585,LOC107680549,LOC107597153,LOC107757943 non-coding downstream 185998 13406678 ~ 13651018 (+)
LOC122354466 NA non-coding downstream 189800 13410480 ~ 13413881 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other upstream 3618 13164761 ~ 13210690 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other upstream 157088 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other upstream 334995 12875513 ~ 12879313 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 513424 12669789 ~ 12700884 (+)
G81268 NA other upstream 628667 12582915 ~ 12585641 (+)
G81434 NA other downstream 8263 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 153341 13374021 ~ 13383843 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other downstream 181607 13402287 ~ 13410126 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other downstream 239784 13460464 ~ 13465416 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other downstream 480555 13701235 ~ 13704975 (+)

Expression


Co-expression Network