yod1 (yod1,LOC107580473,LOC107743281,LOC107699783,LOC107582461,LOC107694882,LOC107751243)


Basic Information

Item Value
gene id yod1
gene name yod1,LOC107580473,LOC107743281,LOC107699783,LOC107582461,LOC107694882,LOC107751243
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8035867 ~ 8040626 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251295.1
GCATCGTGCCAGCTGCATACTAcgagttatttttatttattaagacaaTATTTTCACAATCTTTACAGGATGTTTTTACAGTGAAAGAACTGTTTGAATTTGAggttatgtaattatatatctGCTGCGCTTTTGTAGCGTTATCTTTAGCCTGGCTAACAGTTAGCCTCGCTTACATTGTTGTcaacattgtgttttattattataaacccCGTACTTTTGCTTAGAACCGAACAGGTACAGGATGCTGCGTCTGCGCTGCAAAGCCAAGAACGGGACCCATCTGATGCAGGGTCTTACACACCAATCATGTGTTCAGGAGCTTAAAGATAAGGTTGAAGAGCTAACAGGAATACCGTGTGACGTACAGAAGATCATGGTAGGCTATCCACCGTCCAGCCTTGATCTACGCAACGGTGAAGCCCACCTCAAAGACTACCCTATCAAATCAGGAGACACTCTGATTGTAGAGGAGGAGAAGAACAAACCTAAACCCCAGTCGCAACCCACAGTGACCAAAGGGCCCAGTCTTGACCTGTCCCCGGTTCTAGAGCGCCACGTGGTCCCAGCCGACAACTCCTGTCTGTTTACCAGCGTGAACTACGTCATGGAAGGAGGCGTTTACGACCCAGGCTGCGCTCCTGAAATGCGCGGGCTAATCGCACAGATTGTAGCTAGCGACCCCACCGCGTACTCGGAGGCGGTATTGGGCAAAACCAACGAGGACTATTGCTCCTGGATCCGTCGCGACGACACGTGGGGAGGCGCCATCGAGGTCTCCATCCTCTCGAAGTTCTACCAGTGCGAGATTTGCGTGGTCGACACTCAGACTGTGCGCGTGGACCGCTTCGGCGAGGATGCCGGTTACACCAAACGAGTGCTGCTAATTTACGACGGGATTCACTACGACCCGCTTCAGAAGGCCACGCCCAGTCCAGACGTTCCCGCACAGACTGTGTTTTCCTCCACCGATGACATCATTTTGGCCCAAGCGCTGGAGCTCGCCGACGAGGCGCGGAGGAAACGTCAGTTCACAGACGTCAATCGCTTCGCCCTGCGCTGCATGGTGTGCCAGACTGGCCTGGTGGGGCAGAAGGAGGCAAGGGAACACGCCAAGGAGACCGGCCACACCAACTTCGGGGAGGTGTGACGCCCcgtcgtgttttttttttttttttttttttttttttaacatcaccCCACCTTTGCCGCGTCACTGCCACGCCACCTGACATGGCACCTGCTCTTTCTGCTGCCTGTTCCAGCTCGGTACAGTCCTCTACCTCACATCGTCTAGCGGCTTCAGAAGACTCTCACGTGTCGAGTTCCCCCCAAGAATTCAGTATTCCTTTAACTTTGGTTAACTCTTGAGGTTGAAGTATTAAATGTGCTCGTGTTTTTGAGTCTGTTGCCAGATATGACGACCAAGCCGTATCTTCAAACCAAATTTTAAAGCGATTCTCCACTGACTACctttgtatacatatatataaacgaTTAACACGCTAGTATTAGGGTGAAATTCCCAAAACGCATCCGGGTCATATTTCACTGCACTATCAAAAACATAAAGTCACGATTAAAATCACGattccaaaaaatattatgatgatgataatgcCTATTTTTACAATTCTCACCATAATTCTCATTTAGTATTAGTAATATAGTATGATATTATAAATGAAGAAGTATTTATACGTAGTAGTATTAACGTTAGgctgcttttatattttatagcagTCGTTTAATTGGAAAATAAGTTACTGCATCtaatcatttcattaaaaaaatcataaattatctttttttcttttgctgtaaAATATGACCTAGACATGTTTTGGTGAGATTCACTCACACCCATGACCTCATGTAAACGCTTTTCTGTTGCCTGCAGCTCAAAGATGTGCGAGTAGCAGCGCTTTCGACAGCGCTAGCTAAACTATTAACAAATAACGATACTTTTAAGTTGATCGCGTAAGGCACAGTTGTTCGTTTTTAACAAATTCATCAAACGCGTTTAtctttttcacacacaaagTGCTTCTGCGGCCAGAGTAGCACGGCGAAGCACAGCTAAAATCACGCCTTTCGTGATAACTAATTTAATCATGgcattactgtatttattttattatgcgtCTTTTAAGGTCATACGCACAGCTTCTGAACAATCGACGGCACTACGTGAAGTCTTAAGCTCACTGACTCCATTGTACCTGTTACTTGAAATAGTCACACAGATTGAATATCGAGCCCGGACACTCGATGCTGTTTTTACGCATTTTTGGTAAGCTAGTTCGCAAGAAAGCGTGGATTTTAAGTTGAATGGTGCTGaaagtagaatctcactgaacTACTTTGTGAATCTTTaggttttgttttccttttaagGGCACTTGTGTAATTTCTGCAGATGACCACACAAGATTGTTTTATGCAAAACGTGTTTAATCTCTCTCAACATGACATTTTGTTCGGAAGAGTGATTGTAGTGACtttcatttgactttttaagTGATGATATGTGTCATATTGAACTTTTTCCTGCTTACAGGGCCAATAGATGAGGTTTAGTGTAGCAAAGTATCATAGCATTAGCGCGTGGATGAACTTTAGAGAGAAGACATCTTGTAAGGCCTGATGTACGTTCTCAGTATTTTTCAGTCAGGTACTAGTATCCACActgttgtttacttttttgcagcctttttattttgaagaaatggtGCCATTGTAAGGCCAAAGgacttttttttgcagtgatttTTCTAAATGGCTGTGATCAGTGTTACACTAAGGTATCTTTGAGTGAGAAACTGCATGTACAGCACTCATTGCTACAAAATCACTGGTTCAACTGGGTAATgataaataaacttgaattgatataatatatatatatataaaaaata
>XM_043251296.1
GTAGTACGCCGATTGCGTGACGTAATACGCACGTTTCTGCTTGGTCAGTGTGTCAATTGTTGTTTTAGAGGCGTTCATTGAACCGAACAGGTACAGGATGCTGCGTCTGCGCTGCAAAGCCAAGAACGGGACCCATCTGATGCAGGGTCTTACACACCAATCATGTGTTCAGGAGCTTAAAGATAAGGTTGAAGAGCTAACAGGAATACCGTGTGACGTACAGAAGATCATGGTAGGCTATCCACCGTCCAGCCTTGATCTACGCAACGGTGAAGCCCACCTCAAAGACTACCCTATCAAATCAGGAGACACTCTGATTGTAGAGGAGGAGAAGAACAAACCTAAACCCCAGTCGCAACCCACAGTGACCAAAGGGCCCAGTCTTGACCTGTCCCCGGTTCTAGAGCGCCACGTGGTCCCAGCCGACAACTCCTGTCTGTTTACCAGCGTGAACTACGTCATGGAAGGAGGCGTTTACGACCCAGGCTGCGCTCCTGAAATGCGCGGGCTAATCGCACAGATTGTAGCTAGCGACCCCACCGCGTACTCGGAGGCGGTATTGGGCAAAACCAACGAGGACTATTGCTCCTGGATCCGTCGCGACGACACGTGGGGAGGCGCCATCGAGGTCTCCATCCTCTCGAAGTTCTACCAGTGCGAGATTTGCGTGGTCGACACTCAGACTGTGCGCGTGGACCGCTTCGGCGAGGATGCCGGTTACACCAAACGAGTGCTGCTAATTTACGACGGGATTCACTACGACCCGCTTCAGAAGGCCACGCCCAGTCCAGACGTTCCCGCACAGACTGTGTTTTCCTCCACCGATGACATCATTTTGGCCCAAGCGCTGGAGCTCGCCGACGAGGCGCGGAGGAAACGTCAGTTCACAGACGTCAATCGCTTCGCCCTGCGCTGCATGGTGTGCCAGACTGGCCTGGTGGGGCAGAAGGAGGCAAGGGAACACGCCAAGGAGACCGGCCACACCAACTTCGGGGAGGTGTGACGCCCcgtcgtgttttttttttttttttttttttttttttaacatcaccCCACCTTTGCCGCGTCACTGCCACGCCACCTGACATGGCACCTGCTCTTTCTGCTGCCTGTTCCAGCTCGGTACAGTCCTCTACCTCACATCGTCTAGCGGCTTCAGAAGACTCTCACGTGTCGAGTTCCCCCCAAGAATTCAGTATTCCTTTAACTTTGGTTAACTCTTGAGGTTGAAGTATTAAATGTGCTCGTGTTTTTGAGTCTGTTGCCAGATATGACGACCAAGCCGTATCTTCAAACCAAATTTTAAAGCGATTCTCCACTGACTACctttgtatacatatatataaacgaTTAACACGCTAGTATTAGGGTGAAATTCCCAAAACGCATCCGGGTCATATTTCACTGCACTATCAAAAACATAAAGTCACGATTAAAATCACGattccaaaaaatattatgatgatgataatgcCTATTTTTACAATTCTCACCATAATTCTCATTTAGTATTAGTAATATAGTATGATATTATAAATGAAGAAGTATTTATACGTAGTAGTATTAACGTTAGgctgcttttatattttatagcagTCGTTTAATTGGAAAATAAGTTACTGCATCtaatcatttcattaaaaaaatcataaattatctttttttcttttgctgtaaAATATGACCTAGACATGTTTTGGTGAGATTCACTCACACCCATGACCTCATGTAAACGCTTTTCTGTTGCCTGCAGCTCAAAGATGTGCGAGTAGCAGCGCTTTCGACAGCGCTAGCTAAACTATTAACAAATAACGATACTTTTAAGTTGATCGCGTAAGGCACAGTTGTTCGTTTTTAACAAATTCATCAAACGCGTTTAtctttttcacacacaaagTGCTTCTGCGGCCAGAGTAGCACGGCGAAGCACAGCTAAAATCACGCCTTTCGTGATAACTAATTTAATCATGgcattactgtatttattttattatgcgtCTTTTAAGGTCATACGCACAGCTTCTGAACAATCGACGGCACTACGTGAAGTCTTAAGCTCACTGACTCCATTGTACCTGTTACTTGAAATAGTCACACAGATTGAATATCGAGCCCGGACACTCGATGCTGTTTTTACGCATTTTTGGTAAGCTAGTTCGCAAGAAAGCGTGGATTTTAAGTTGAATGGTGCTGaaagtagaatctcactgaacTACTTTGTGAATCTTTaggttttgttttccttttaagGGCACTTGTGTAATTTCTGCAGATGACCACACAAGATTGTTTTATGCAAAACGTGTTTAATCTCTCTCAACATGACATTTTGTTCGGAAGAGTGATTGTAGTGACtttcatttgactttttaagTGATGATATGTGTCATATTGAACTTTTTCCTGCTTACAGGGCCAATAGATGAGGTTTAGTGTAGCAAAGTATCATAGCATTAGCGCGTGGATGAACTTTAGAGAGAAGACATCTTGTAAGGCCTGATGTACGTTCTCAGTATTTTTCAGTCAGGTACTAGTATCCACActgttgtttacttttttgcagcctttttattttgaagaaatggtGCCATTGTAAGGCCAAAGgacttttttttgcagtgatttTTCTAAATGGCTGTGATCAGTGTTACACTAAGGTATCTTTGAGTGAGAAACTGCATGTACAGCACTCATTGCTACAAAATCACTGGTTCAACTGGGTAATgataaataaacttgaattgatataatatatatatatataaaaaata

Function

symbol description
yod1 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in several processes, including endoplasmic reticulum unfolded protein response; protein deubiquitination; and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within proteolysis and response to unfolded protein. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human YOD1 (YOD1 deubiquitinase).

NR:

description
PREDICTED: ubiquitin thioesterase OTU1

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0035523 protein K29-linked deubiquitination biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:1990167 protein K27-linked deubiquitination biological_process
GO:1990168 protein K33-linked deubiquitination biological_process
GO:0035871 protein K11-linked deubiquitination biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K13719 OTU1, YOD1; ubiquitin thioesterase OTU1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251295.1 True 2918 mRNA 0.43 3 8035959 8040626
XM_043251296.1 False 2771 mRNA 0.44 3 8035867 8040626

Neighbor

gene id symbol gene type direction distance location
etnk2 etnk2,LOC107694884,LOC107751192,LOC107698335,LOC107582391,LOC106565623,LOC106583121 coding upstream 44913 7979146 ~ 7990954 (+)
slc41a1 slc41a1,LOC107654373,LOC107698497,LOC107751220,LOC108254937 coding upstream 78193 7932605 ~ 7957674 (+)
klhdc8a klhdc8a,LOC107743283,LOC107654360,LOC107581204,LOC107700004,LOC107582463 coding upstream 112443 7905286 ~ 7923424 (+)
si:ch211-117k10.3 si:ch211-117k10.3,LOC107654380,LOC107573302,LOC107654420,LOC107751187,LOC107582464 coding upstream 309767 7719956 ~ 7726100 (+)
LOC122354605 LOC107756631,LOC107654376,LOC107751186,LOC107654419,LOC107582394 coding upstream 317290 7713238 ~ 7718577 (+)
zgc:158258 LOC107743280,LOC107694864,LOC107580189 coding downstream 1712 8042338 ~ 8046954 (+)
erc2 erc2,LOC107694874,LOC107699320,LOC107582387 coding downstream 113306 8153932 ~ 8201269 (+)
LOC122354006 LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199 coding downstream 182730 8223356 ~ 8229586 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding downstream 254250 8294876 ~ 8301978 (+)
cacna1da cacna1da,LOC107743249 coding downstream 308024 8348650 ~ 8435219 (+)
G79813 NA non-coding upstream 155469 7873789 ~ 7880398 (+)
G79748 NA non-coding upstream 205556 7829953 ~ 7830311 (+)
LOC122354645 NA non-coding upstream 537678 7486210 ~ 7498189 (+)
G79706 epha8,LOC107654448,LOC107751217,LOC107582396,LOC107654383,LOC107565732 non-coding upstream 660193 7372912 ~ 7375674 (+)
G79707 NA non-coding upstream 663494 7349535 ~ 7372373 (+)
G79863 LOC107751197,LOC107697444,LOC107582459,LOC107694863,LOC102793523,LOC103359687 non-coding downstream 161097 8201723 ~ 8202344 (+)
G79864 NA non-coding downstream 163880 8204506 ~ 8204923 (+)
G79865 NA non-coding downstream 164371 8204997 ~ 8205706 (+)
G79868 NA non-coding downstream 170253 8210879 ~ 8211520 (+)
G79869 NA non-coding downstream 171044 8211670 ~ 8216411 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 294426 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1211322 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 2689035 5286439 ~ 5346832 (+)
samd13 samd13,LOC107592550 other upstream 3651888 4375839 ~ 4383979 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other upstream 3660479 4368425 ~ 4375388 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other downstream 34793 8075419 ~ 8150569 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other downstream 240189 8280815 ~ 8282901 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 561561 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 777764 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 834662 8875288 ~ 8878988 (+)

Expression


Co-expression Network