notum1b (notum,LOC107733046,LOC108443886,LOC107564571)


Basic Information

Item Value
gene id notum1b
gene name notum,LOC107733046,LOC108443886,LOC107564571
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11342521 ~ 11352471 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251328.1
ttttgttAGGTGAATGATATTTTAGCACTTCGGATTATACGATACATAAATGAGAAATGTTCGGGCTGACTTGAAACAAGATTATGATTTTTCTGTAAAGGTTTTAGTGAACTTCATTAGCCCTGAGAGCGTTATGCAGCTGGAGCAGAGCTGCTTCTTCACATGTCAGTATTCACACGAAACACACTGAAGATCAAAGGGACACGCATGTCACTAGACCACGCCCCCCTCTGACCGGCCTTCTCTGCTGATTGGAGGACCGGACAGGGCCACACGCCCCTCTGCCGGCTGATTGGCCGAGAGGGCTGcaataaaaaaccccaaataatGATCCCACGAGGGACACAGACGCTAGCCGTGATCGGAGCGCAGGAGGACAGACGCTCTCTTCAGGATGATTATGAGCCTCTGTGGACTCACCGAAGCACGGAGATGATCCGAGTTCTGCTGGTTCTGCTGGTGCTGGGGTCAGCCGGGGGCAGGAGGGCTCGGGGTCAGCGGGCTCAGACGCCCGAGAGCTTTCCTCTGGACTTCACAGCCGTGGAGGGGAACATGGAGAGCTTCATGACTCAGGTGAAGAACCTGGCTCAGTCCCTGTATCCCTGCTCGACCCAGAAACTGGACCAGGAGATGAAGCTTCGGTTCCTGAGGAACTCGTCGGTCACCTGCAACGACGGCTCGCCCGCCGGATACTACATAAAGGAATCACGAGGCAGCCGGCGATGGCTGATGTTCCTGGAGGGTGGCTGGTACTGCTTCAGTAAACACACCTGTGACAGCAGATACGAGACCATGAGGAGACTCATGAGCTCCAGCAAATGGCCTCCCGCCAGGACAGgaaCAGGCATCCTGTCGTCTCAGCCCGAGGAGAATCCTCACTGGTGGAACGCAAACACAGTgtttgTGCCGTACTGCTCCAGTGATGTTTGGAGCGGCTCCAGAGCGAAGACAGACCAgagtgatTATGCGTTCATGGGATCTCAGATCATTCAGGAGGTGGTTAAGGAGCTGGTCACTAAAGGTCTGGACGGTGCTAAAGTGCTGCTGCTGGCCGGAAGCAGCGCCGGAGGTACCGGGGTGCTGCTGAACGTGGACCGCGTGTCGGAGCTGCTGGAGGACCTGGGTCTCGGTTCGGTTCAGGTCCGGGGTTTAGTGGACTCGGGCTGGTTTCTGGATCATAAACAGTACCGCTGGACCGACTGCATCGACACCATCAGCTGCGCTCCGACCGAGGCCATCAAGAGAGGAGTGGGGTTCTGGAGCAGCGTGGTTCCGGAGCGCTGCAGTCGAGTGTATCACGGAGAGGACTGGAACTGCTTCTTTGGTTATAAGGTTCAGCCCACACTGAAGAggccGGTGTTTGTGGTTCAGTGGTTGTTTGACGAGGCTCAGCTGATGGTTGATAACGTCCATCTGACGGGTCAGCCGGTGCAGGAGGGTCAGTGGAGATACATCCAGAACCTGGGCAGCGAACTCAGAAACACCCTTAAAAGTGTCCCGGCCATGTTCGCTCCCGCCTGCTTGTCTCATGAGATCATCACAAGAAGCTACTGGATGGACATCCACGTCAAAGGCACCTCGCTCCCTCGAGCGCTGCAGTGCTGGGACCGCAGCCTCCGTCACCACGGCAACAGCAGCGGCATCGCTCAGGCTCCGCCCCGGGGCTGCCCTCTTCACTTGATTGACAGCTGCCCGTGGCCCCACTGCAACCCCACCTGCCCCAGCATCAGAGAGCAGCTGACGGGGCAGGAGATGAGCGTCATCCAGTTCCTCACGCACCTGGGCTTCGACGTGCAGCGCGTGGCTCAGCAGCAGGGCATGGAGCCCCACAAACTGCTGGGCATGCTCAGTAACGGCTCCTGAATGAGGGGCCACTGCTACAGCGCCAAAAAAAGAGCATTCAGTGAAGCTAAAAACAAGCCCATATCTATAAGCACTCGCGTGATGTTTCCATCGAGGGACGgtattgcatttataatggcAAGGTTTATAacctttttagaaaaacaggCATTTAGTAGATGTCTCATTCTTACTATTTTTAAGATATGGCAGAAATAAGTAGTAGAGCCTGGTTCCGAATACATCAGCTTGAATTATTGGCCCAACAGTTTTGTTAgaaaatgctgatttgtttgCGAATGAAGCAACTGCCTGACTTTATGcatgagtcattgaatcattgactcaaccgattcattcaaaatagaTGGTTCATTCAGCAAAGCAAGTGACTGCCTGTTtgaatgagtcactgaatcaccGACTCAACTGATTTATTCGAAACGGCTGGttcatttgacaaaaaaaacaacaactactgACTGTGTTGGTGAATGAGTCACTGAACTGTTGACTCAGCCAGTTCATTCGAAACAGATGGTTAATCCAAGTCAGTGAATCGTTGACAACTGATTCATTCGGCAGCGAAGCAAGTGACTTGCTGAATTTAGAAACACATACTAGTATACTATTCTTACTATTTTTAGGATATCTTTGCATGGCAGAAATAGTAAGAGTTGTGAGTTAGTAGTGCATGTTTCTGAATACAGcaactgtctttatgaatgaatcactgaatcaatgACACAAGTATTCATAAAAACAACTCATTAGGGAGTCAATGAATCACTGACTCAACCAATCTGTTCAAAGAGAAcgatttattcagaaatgagGAAAGTGACTGTCTTTACGAATGGGTCACTGAATCATTGTCTcaactgaatcattcaaaatgGATGATTCTAAACAAGAGACTGACTCATTCAAGACACCGATTCAATTAATTAGTTCAAAATGGCTGATTTAAGAAAACTGCACTGACTCAACCCAATCATTCAAACAGTTGATTCGTTCCGAAATTATGCAAGTGGCTAACTTCACCAATGAACTCAAGAGTTGTATATAATGGTTAATTAATTCAGGTACAAAGCAAGTGACGGTCTTTATTAATcagtcattgaatcattgattcaactgattcattcagaaaagcTGAATCATTCAGGAACTGTGTTGAACAGAGATGCAGTGGTTATGCTGTGATTCTGAAATAGTTAGGTTGGTGGAATAGAGCAACtatattgtgtctaaaatgtctcttaatattaatttatacagcacatttttacagatttatttattaattatacagcATTGTATCACACCAGTGAACTGACTTCTAACCCAACACATAAGAGCTGAGGTTTGTGTGTGATCTCACAGGCGCCATCATCTTCTATATCACATCATATCACTTGATGGACTGCAGCAACAATCTTACTCTGCAGATAAAGGACAAACTCCCTGAGGCTTTTCACAAGTACTGGAAATACCAAAATCAAGACTAGAGTCCTTAGAGACACACGAACGCCTCACAGACATGTTTATATGAAAACATCTCTCCCCTAAAAGACTGGATATAATCATCTGGTGAAGAATGGCTGAATGGATCACAAAATCTGTAGAGAAcatgtataatgtgtgtatgtatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
notum Enables palmitoleyl hydrolase activity. Involved in negative regulation of Wnt signaling pathway and protein depalmitoleylation. Acts upstream of or within bone development and regulation of bone mineralization. Predicted to be located in endoplasmic reticulum lumen and extracellular region.

NR:

description
PREDICTED: protein notum homolog

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0006507 GPI anchor release biological_process

KEGG:

id description
K19882 NOTUM; O-palmitoleoyl-L-serine hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251328.1 True 3569 mRNA 0.48 11 11342521 11352471

Neighbor

gene id symbol gene type direction distance location
trappc10 trappc10,LOC107657364,LOC107572046,LOC107693011,LOC107713874,LOC102780331 coding upstream 93689 11227989 ~ 11248832 (+)
ankrd13c ankrd13c,LOC107693019 coding upstream 132230 11194251 ~ 11210291 (+)
rfc4 rfc4 coding upstream 152687 11185451 ~ 11189834 (+)
gemin6 gemin6,LOC107682381 coding upstream 195700 11145189 ~ 11146821 (+)
LOC122353583 LOC107747909 coding upstream 261740 11056382 ~ 11080781 (+)
tmc8 LOC107713252,LOC107702016 coding downstream 22836 11375307 ~ 11384031 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding downstream 31836 11384307 ~ 11391458 (+)
si:dkey-93h22.7 NA coding downstream 40422 11392893 ~ 11396627 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding downstream 44575 11397046 ~ 11404549 (+)
afmid afmid coding downstream 65134 11417605 ~ 11424214 (+)
G80784 NA non-coding upstream 14843 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 72814 11263422 ~ 11269707 (+)
G80766 NA non-coding upstream 82146 11258381 ~ 11260375 (+)
G80764 NA non-coding upstream 91814 11249895 ~ 11250707 (+)
G80763 NA non-coding upstream 110003 11232087 ~ 11232518 (+)
G80667 LOC107567635 non-coding downstream 85436 11437907 ~ 11438726 (+)
LOC122353945 NA non-coding downstream 91169 11443640 ~ 11447521 (+)
G80668 NA non-coding downstream 96578 11449049 ~ 11452138 (+)
G80804 NA non-coding downstream 119500 11471971 ~ 11472301 (+)
G80808 NA non-coding downstream 155529 11508000 ~ 11509053 (+)
G80761 NA other upstream 115899 11222347 ~ 11226622 (+)
G80638 NA other upstream 680551 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 871334 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1802400 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1917219 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 153182 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 172552 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 176248 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 227555 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 345853 11698324 ~ 11700214 (+)

Expression


Co-expression Network