xxylt1 (xxylt1,LOC107677510,LOC107715806,LOC107718247,LOC107685961,LOC107581703)


Basic Information

Item Value
gene id xxylt1
gene name xxylt1,LOC107677510,LOC107715806,LOC107718247,LOC107685961,LOC107581703
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 9540559 ~ 9579355 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251356.1
TCAAGACTTTTATTATGAACTATCGAACATCCGGTGATGTAAGACGCGCAAGTGTTTAGGTGTCCCGTCCGTGGACATGTCTTCTGtctgtgcaaataaaaatgtcccCCTATTTCTTTGGTGGCTCGCTGCTATAGTTTGCTGTCCTCAGAAGTGAAGGTGTCTGATGTGAATGCGTCACGTGACGGCGGGTGTGATTGGACAttaaaaagtgtcaaaaagACACAAGCTGTCCTATTTTGTGGATGTAGACGAGCATCCATGGGTGTCCTGCGGGTGCTGTCGGTCAGCATGGGAAGGATCAGCACGTTTCGGTCCTATCAGATCACGCTGCTCTTCGCTGCGGCTCTAGCCGTGGTGGCCTTCTACTACTTCGGCTCTGAAAAGCAGAACTTCTCCAGCACCACGAAACGCATCAAGGAAACGCAAGCGAGCCACAACGCCAACCGCGACGATGCGGATCTCTCCGTAGACATCCGGTCTGGACGTCCTGAAAGCAGAGCTGGAGATGAGCTGGAGGGGAAGCCGTCACGCTTTCACGCTCTCATGATGTTCACCAAAGTGGACAAGAGCTTGAGCTTGCAGCAGAAGTTTCAGGTGGCCATGCGCTCCGTGGCCAAACACGGACGCTTCCTGGAGGAGGAGGTGCTGGTTCTCCATTACGTGTCTGACGCTGGAAGTCGGGAGCTGGGGGAGAAGATGCTTCCTGAACTTTTGTTGGATGCTACTTTCCGGTACGAGGTGGTGTTTCACGATGTAGACGCCCTTACTGAGAAGTTATTTCCCATCGTAGAGGCCATGCAGAAACATTTCAGCGCAGGTTCCGGTGCTTACTATAGCGACGCCATCTTCTTCCTGTCGGTGGCCATGCATCGCATCATGCCTGCAGAATTGAAGTGCATTGTTCAGCTGGACCTGGACCTCAAATTCAGAAGCAACATCAGAGACCTCTTCCAAGAGTTTAACTATTTCCCTGCTGAGGCTGTCATTGGAATTGCACGTGAAATGCAGCCAGTTTACAGACACACTTTCTGGCAGTACCGCAAAGACAATCCAAAGTCCCGTGTTGGTGACCCTCCACCAGAAGGTCTGCCCGGCTTCAACAGCGGCGTAATGCTCCTGAACCTCGACGGCATGCGTCGCTCAACCTTATACAACCAGCTTCTGGAGCCCGAGCGGGTGGCCCGCCTTGCAGAGAAATACCACTTCCGGGGCCACCTGGGTGATCAGGATTTCTTCACAATGATCGGGATGGAGCACAAGGAACTGTTTTACCCACTGCCCTGCGGCTGGAACCGACAGCTTTGCACGTGGTGGAGGGAACACGGGTATGGTGACATCTTCCAGCTGTACTTTCACTGCGATGGGCCAGTGCACATCTACCACGGCAATTGCAACTCTCCCATACCCGATGACTGAGGTTCAAAGCGCGTCTTTGAATGCCAACTTTTAGATTAAACTCATTTTGTTTGCACATCTTGAACAACTTTAAATCAAGTGGACCAAGGCTGAAGGGGCTCATTGTTAGAGGTGCTAATAGTGCAGCATTCCCATGACTAATCACATTTACACAATATACTCCAGCCATTACCAcattaatcattcatttaacaCCGCTGAGGCTGTTGGTGCCTCTCCAAAGTTACTGAAAGAAACTCTGGCTTAAATGCCAgttgttttcttcatttatatAATGCAGTGCGCCTTTGACTCTCAGTATTCTGGGTTTCCTCATGCAGGTGTCTCATCAAATCACTCTGAGACAGCAGGCTGTAAAAGAGCCAATCAGAGTCGTTTTCCCCTCCACTTTGTATTGTTTACAGGTACAGTTTCAATCTTGAAGTCACATTAAGGTACATtatcttcattttaaaaagagagttgcatatatatttttacttgtcatcagttctttaaaaatgcatttccacTTTGAGCCACGTCTCCCACTCGTTTGCTATGTTCCATACAGTGATGATGAGAAACGAGAGGGAAAGGGTGTTGACCCATTTTCCTGAGTTTTTATGTGCTGATGTTGGAAAGCCTTTTCTCTGTGATCTGCAGCTGAATCTCCTTAGCCACGATAACATCTCAGATCGGAGGTCTCGTTCTTGCCGTGGTGGTCTGATCCGCCTGAGAAATGTGGAAGTGGGATTTGCCGGAATATTCCAAAGGGAACAGCCTCTGCCCTGAGGGAGATATGCGCTAGATTTTGAGGGCAGAGCACTAGCTGTTGTGGTTGGCTGGCATTTATTGAGCGATGTTGCTGTTGGCGAAGCTCTGCGGGATTGTTTGAAATGCTCGTAATAACCTGCGCTATGTCAAATCAACAGGCAGGAGAGAAAGAACTTGGTAATCAAGTCTCACATGTTTTGGCAGGCAGCATCGAGATCCCACTTCAAGCTCTTCTGTGTCCAGTATGGTGAGGTTAAGGACTGCATGTCTTCGGGATTTTCAGTggattagttttttgttttgttaggaGTGCGGCCATGTTTTGTCTAGCAGTTTTAGACCGCCTTTTGCCTGATCAAgttaaaagcaaaatgtttaacaaattaacatttaatctgCTTGGTAAAGTATTCGCTCTGTTATCTTTGTGTATTAATTTTCAATGGGTCGCATCCTGAATGATGAGCAGAGCATATTTCGGTGGAATcttaatttgtacatttatcgTTCAAAAGCTGGGGGTAGGAAAGATTCATGTGTCTGCGTTCGGTAATATGGGTAATACATCACAATGGTAAACGTAAATTATATTGTTACCATAAGCTCTTCAAAATACTGTGAATAATTATATCagattattcttttttttttttttaaatgcattttaaggatACTTAAATGCTGGATCAAATGAAGGAGATGCTAGGAATAAAAGCACACGTTCACTCTTTGACAGCAGATGGCGCTGATGAAACAGCAGAAATGTTACTCTGGTAACCACGTAAACAAAGCAGCTGTTACTTTCTGTTTCTGaacagttttgaaatgtttcagtCATTAAGATTTTTTGCATTGGCTGTTTGGAGTTCATTGCAGcactaaataatttatttttgtgtacattttaatctGGATTACAACGTGCCCTAGTTATTGTACGAAGacgttttgatttttaattgttcGGTCACACTTTACATTAAAGCACCATTAGTTAACCTGAACTATCAATGAAAAATTCTTCTAGAGGATTCggttaatttcaacatttgagcatgttattaaaatcaaaagttgtaGGTATATTATTTAATGGAGATGGGTTAATATGAACTCGCAGACAATAATAACTTCTGTAACAAATATAGTTAATGGTAATGCATTAACAAAACAGACTTGtcctgtcaaacgattaattgcaattaattgcatccagttttgtttacatatgtgcactgtgtatattttttatgtatctaTATAACAATACACCCACTCACATATATAGTCGAGAAAAATCTgttatgtttatacattaaaaattattaaattatgtgaatatatacatgtacatattttcaaaaatatatgatgtgtgtgtctatttacatatacataataaatatacaaagtacacacaaaaactttattgtaaagtgttaccttttgttattttaattcttttgcaCTAATTCATTCGCTTGATTTATGAGTTTTTGTGTATtgcttaattgtatttaaatgtttactacTTTTGTTTTAAGGTATTAAACCGGTTATACTGTTTTGTCGTGATactgcaaaatgaaaatttgagaCCGTCACATGCCTAGTCTCTTATGATCAccagtgctgcatttatttggttcaaaataaagtaaaactgtaatattgtgaaatcttATTACAACTCTTTTCtctttgaatacattttaaacagtttttttatcagtgttgaaaacagttgtaacagctgcttaatattttttttgaccccaaaataatgttttggttttttttatacatttttgcaagTTTATTTGAATAGAAAGAAGAGCCGTTATTTTGATTTtggatcagtttaatgcattctcatttatttttcagttcttACTTACCCCTAACTTTTGAACAATAGGCTCATAAAGACTCTTACCTACTTTTTTTCCGTGaatattttttccccacagGAATCTCAGGGAAActgatgaaacaaaaaaaacctttaataaaACCCCTACAAACTATAGACTTCTATGTACaggtttttctttcttgtctttGAGTACTGAATGTAATACACTTGTTGTATAATATGTTTTCATAGAAATTGAATGTATTAATGAACAAAATTAAGGTTAAAGaacataaaatttttaatatatctaatatatctTTCTCTCCATACAAACGTATTGGTGGTCCAAATAAAATGTGCGTCTATTCACTAA

Function

symbol description
xxylt1 Predicted to enable UDP-xylosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human XXYLT1 (xyloside xylosyltransferase 1).

NR:

description
xyloside xylosyltransferase 1-like isoform X1

GO: NA

KEGG:

id description
K23800 XXYLT1; xylosyl alpha-1,3-xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251356.1 True 4406 mRNA 0.40 5 9540559 9579355

Neighbor

gene id symbol gene type direction distance location
pfkfb4a pfkfb4a,LOC107715804,LOC107574463,LOC107718206,LOC107685962,LOC107677511,LOC107551799 coding upstream 35131 9493639 ~ 9505428 (+)
mapkapk3 mapkapk3,LOC106525176,LOC107677509,LOC107574676,LOC107551779 coding upstream 49542 9475511 ~ 9491017 (+)
dnah1 dnah1 coding upstream 66337 9443818 ~ 9474222 (+)
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding upstream 273860 9261940 ~ 9266699 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding upstream 398630 9084641 ~ 9141929 (+)
lsg1 lsg1,LOC107573872,LOC107677512,LOC107551801,LOC107685959 coding downstream 65363 9644718 ~ 9649706 (+)
tmem44 LOC107685958,LOC107718212,LOC107715772,LOC107551791 coding downstream 70570 9649925 ~ 9658342 (+)
atp13a3 LOC107573662,LOC107715810,LOC107677501,LOC107685957,LOC107551802,LOC107718210 coding downstream 81206 9660561 ~ 9694243 (+)
tdo2b tdo2b,tdo2,LOC107718213,LOC107715811,LOC107551803,LOC107685956,LOC107573507 coding downstream 116920 9696275 ~ 9700230 (+)
col6a1 col6a1,LOC107715812,LOC107677507,LOC107685955,LOC107718214,LOC107551781 coding downstream 130910 9710265 ~ 9740138 (+)
G80335 NA non-coding upstream 28119 9508371 ~ 9512440 (+)
G80296 NA non-coding upstream 117899 9369069 ~ 9422660 (+)
G80277 NA non-coding upstream 167800 9356422 ~ 9372759 (+)
G80282 NA non-coding upstream 222318 9316916 ~ 9318241 (+)
G80272 NA non-coding upstream 286204 9251794 ~ 9254355 (+)
G80340 NA non-coding downstream 2732 9582087 ~ 9582653 (+)
G80341 NA non-coding downstream 3395 9582750 ~ 9583187 (+)
G80343 NA non-coding downstream 6855 9586210 ~ 9586452 (+)
G80344 NA non-coding downstream 7845 9587200 ~ 9587461 (+)
G80346 NA non-coding downstream 12623 9591978 ~ 9592212 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 438 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 115257 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 561318 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 658903 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 661571 8875288 ~ 8878988 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 887267 10466622 ~ 10471187 (+)
G80638 NA other downstream 1061777 10641132 ~ 10661970 (+)
G80761 NA other downstream 1642992 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 1926298 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 1945668 11525023 ~ 11527042 (+)

Expression


Co-expression Network