LOC122353575 (sarnp,LOC107696044)


Basic Information

Item Value
gene id LOC122353575
gene name sarnp,LOC107696044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1762575 ~ 1766074 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251374.1
CAACTGTTCCCTTTAGTCCCGATCTCCTGACCGACGGGGGGCGCTGCAGCGCGAAATCGGCCGTAAAGACTTTAAAACCGGAAAGAAACCGATTTCAAAATACAAACCCTCTTCAAGAAAATGGCGGAAGTCGTGGAGCTGCATAAACTCAAGTTGGCAGAGCTGAAGCAGGAATGCACTGCTCGTGGGCTGGATGCCAAAGGAAATAAAGCCGATCTGATTGCCCGGCTGCAGACTTACCTGGAGGAGCATGaggAAGTGAATGAAGAGGAAGTTCTGGGAGAATATGGCGAGGAGGCCTTTACCAAAGAAGAGACGGATGTGGAGAAGGAAGAGTTCCCTGCTCCTGAAGTGCTGTCTGAGAAGAAACTGGTCAAGATAAGCCCTCCTACTACAGCTGGAGAGAGGCTTCAGAAAAGAGCAGAGCGCTTCAATATTCCTCCGAACGCAGACAGCAAAAAGGCGGCACGGGCAGCAAGGTTTGGTTTGGAAGTCTCCGAGTCTGTGTCGACCAAAGgaagTTCAGCCAAACCGAACGTTGACGTTGAGGTGTTAAAGAAGAGAGCAGAACGTTTCGGCATGAATGTCTCTTCGGTTTCTAAAAAGATCGAGGATGATGAAAAGCTTAAGAAGAGGAAGGAAAGATTTGGCATCGTCACGAGCGCAGCGGCCGCTGGAGCCAATGATTCGGAGGCAAAGAAGCGAAAACGTGCTGAGCGGTTtggaaatgtataaaacatgGATCTTAccctttttgtactttttatgaagttttttttaagtgttctttGCGGTTCATTTTCTGATAAGCTTGTAATCCCTGTAGTGCCATGGTTGTTTATctgatatttacattaaaagtacCCCAGTTCCTTCTA

Function

symbol description
sarnp Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein).

NR:

description
PREDICTED: SAP domain-containing ribonucleoprotein isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K18732 SARNP, CIP29, THO1; SAP domain-containing ribonucleoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251374.1 True 878 mRNA 0.47 11 1762575 1766074

Neighbor

gene id symbol gene type direction distance location
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding downstream 32736 1725270 ~ 1729839 (-)
cnpy2 cnpy2,LOC107572063,LOC107557548 coding downstream 62117 1697584 ~ 1700458 (-)
dgkab si:ch73-267c23.10,LOC107737366,LOC107696033,LOC107557543,LOC107730898,LOC107683646,LOC107557545 coding downstream 84380 1664162 ~ 1678195 (-)
slc2a10 slc2a10,LOC107696032,LOC107737362 coding downstream 100611 1657296 ~ 1661964 (-)
znf740a znf740a,LOC107754560,LOC107557541,LOC107551334,LOC107687104,LOC107687371 coding downstream 174745 1565660 ~ 1587830 (-)
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding upstream 12235 1778309 ~ 1786347 (-)
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding upstream 23678 1789752 ~ 1797665 (-)
timeless timeless,LOC107689440 coding upstream 36671 1802745 ~ 1822748 (-)
gdf11 gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248 coding upstream 62333 1828407 ~ 1850291 (-)
LOC122354691 NA coding upstream 96613 1862687 ~ 1862826 (-)
LOC122354127 NA non-coding downstream 21557 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 248672 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 250343 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 251049 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 313570 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 157631 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 717596 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 721410 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 930335 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 931154 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 46446 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 65788 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 502485 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 787788 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 968439 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1047278 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1053514 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1071209 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1072167 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 1072773 2838847 ~ 2838919 (-)

Expression


Co-expression Network