CI01000000_16781396_16802242 (HTR4)


Basic Information

Item Value
gene id CI01000000_16781396_16802242
gene name HTR4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16781396 ~ 16802418 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_16781396_16802242.mRNA
GAAAATCAAAACCAACTACTTCATCGTCTCGCTGGCATTTGCTGACCTGCTGGTGTCAGTGCTGGTGATGCCGTTTGGTGCCATAGAACTGATCCATCAGAACTGGATCTATGGAGAGACCTTCTGCCTGGTCCGCACCTCTCTGGACGTGCTGCTGACCACCGCCTCCATCCTACACCTCTGCTGCATATCCCTTGACAGCAGCATGGAAGAAAGAGACCCAGATGGCACTACAGAAATGAAATGTGGAGTGCCGCACCTGATCAGCCTCCACACAGGGAACAAAAGAGCAACAGGGGAGCTGTCAGGAGGTTTTTCAGCGGCGGTTACAAAATGTCGTACACTCTTGCGCAATGCAGTGACTGCAGTGTTATTCCTCATTAAGCTGATGCATTCCTATAACGCTTACAGGTGCCATGGTGAAAAATCAATATGCTGGTTGAGCACGTATTATGCCATCTGTTGCCAGCCACTGGTCTACAGGAATAAGATGACACCACTGAGAGTGGCTCTAATGATCGGAGGATGCTGGATAATCCCAACCGTTATTTCCTTCTTACCCATAATGCAAGGCTGGAACAGTATTGGAATAAATGATTTGATAGAGAAGCGGAAGTTCTCCGGCAACTCCACGGCGTGTGTGTTCATGGTGAACAAGCCATACGCTCTGACCTGCTCAGTCGTGGCCTTCTACTTACCGCTGATCCTGATGGTGCTGGCGTACCAACGCATCTACATCACGGCACGGGCACACGCCCGACAGATCAGCATGCTGCAGCGGGCCGGAGGAGCAGGAAACGCAGACAGTGCAGACCACCAACGCAACCACCGCATGCGCACTGAGACCAAGGCAGCCAAGACTCTGTGTATCATCATGGGCTGCTTCTGCCTGTGCTGGGCCCCTTTCTTTATCACAAACGTGGTGGACCCTTTCATAGACTACAGTGTTCCTGAGCAGCTGTGGGCAGCCTGCCTTTGGCTGGGCTACATCAACTCCATGCTCAACCCCATCCTTTACGCCTTCCTCAACAAGTCCTTCCGTCGTGCCTTCCTCATCATTCTCTGCTGCGGACACAAGCGCTACCGCCGACCTTCCATCTTGGGCCCAGGAACGACCTGCACGGCCACGCAGATCAACGGGTCTACACACGTCTTGAAGTAAGTGAGACAAGCATTATATTTCCCTAGTTCTCTCTTTTCTAATGTGGTTCTGGTCAAATTTACACTTGAAACGAAGACAAATTACTGTATGGTCAGGAACAGAAACATTGGCATTGAGTGTTAATCTCATCAACAAAGACAAGACAAAAACAATAACAAAGACAAGACAAAAAGTCA

Function

symbol description
htr4 Predicted to enable G protein-coupled serotonin receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; chemical synaptic transmission; and regulation of appetite. Predicted to be located in endosome and plasma membrane. Predicted to be integral component of plasma membrane. Orthologous to human HTR4 (5-hydroxytryptamine receptor 4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04160 HTR4; 5-hydroxytryptamine receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_16781396_16802242.mRNA True 1338 mRNA 0.50 5 16781396 16802418

Neighbor

gene id symbol gene type direction distance location
CI01000000_16676128_16679215 SLC26A2 coding upstream 102156 16676036 ~ 16679240 (+)
CI01000000_16611284_16612778 CPLX2, CPLX1 coding upstream 167511 16611284 ~ 16613885 (+)
CI01000000_16573665_16580545 SLC25A48 coding upstream 200438 16573665 ~ 16580958 (+)
CI01000000_16468276_16479177 NA coding upstream 300337 16467489 ~ 16481059 (+)
CI01000000_16375958_16382103 G3BP1 coding upstream 398838 16373958 ~ 16382558 (+)
CI01000000_16835058_16848950 NA coding downstream 32502 16834920 ~ 16849092 (+)
CI01000000_16861880_16863508 NA coding downstream 58025 16860443 ~ 16863777 (+)
CI01000000_16871696_16877904 NA coding downstream 69278 16871696 ~ 16878004 (+)
CI01000000_16878307_16893681 MATR3L1.2 coding downstream 75793 16878211 ~ 16894061 (+)
CI01000000_16894331_16900440 NA coding downstream 91817 16894235 ~ 16900443 (+)
G10968 NA non-coding upstream 44149 16737032 ~ 16737247 (+)
G10956 NA non-coding upstream 89846 16691262 ~ 16691550 (+)
G10912 NA non-coding upstream 154088 16626953 ~ 16627308 (+)
G10911 NA non-coding upstream 154904 16626008 ~ 16626492 (+)
G10903 NA non-coding upstream 197278 16581312 ~ 16584118 (+)
G10937 NA non-coding downstream 99512 16901930 ~ 16902606 (+)
G10934 NA non-coding downstream 118874 16921292 ~ 16921561 (+)
G11019 NA non-coding downstream 194221 16996639 ~ 16996931 (+)
G11028 NA non-coding downstream 201984 17004402 ~ 17004656 (+)
G11039 NA non-coding downstream 212922 17015340 ~ 17015573 (+)
G10201 NA other upstream 850834 15930266 ~ 15930562 (+)
G9201 NA other upstream 2546455 14215024 ~ 14234941 (+)
G7522 NA other upstream 4602388 12178369 ~ 12179008 (+)
G7514 NA other upstream 4644388 12136522 ~ 12137008 (+)
G7153 NA other upstream 5535763 11244457 ~ 11245633 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 536736 17339154 ~ 17346200 (+)
G11465 NA other downstream 1081535 17883953 ~ 17887462 (+)
G11521 NA other downstream 1230321 18032739 ~ 18164112 (+)
G11801 NA other downstream 1878449 18674116 ~ 18745376 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011494 htr4,LOC108269380 coding CM030133.1 CM030133.1 27188551 ~ 27195648 (+)