LOC122353607 (kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793)


Basic Information

Item Value
gene id LOC122353607
gene name kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17449267 ~ 17454774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251424.1
AGTCCATTGGCCGTCGCGGGCGTTCGGCGACGCTGATTCGCTGAGGCCTGTTTCCGGGGCTCCATTCCATTAGTGACGTTTTCCCAGTCGCCGTGCGACAGATTGGGGAGAATGGCTGCCAGTGGAGACGTAGGAAAGCTGTTACAAGTACAGAATGGGACTCCAGCAAGCACAAGCTACAACGGGGTAGATGCCCTGCATGCCTGTAACATCCTACAGCAGCTTAAAGCCTTGTACGACGAAGCTCAGCTGACTGACATTGTCGTGGAAGTGGACCATGGCAGGACGTTCTCTTGTCACAGAAATGTCCTCGCTGCCATCAGCCCTTACTTCAGATCCATGTTCACAAGTGGCCTTACAGAGAGCAGTCAGCGGGAGGTGCGGATTGTTGGTGTGGAGTCTGAATCCATGCATTTGGTTCTGGACTACGCTTACACCTCTCGTGTCACTCTCACTGAGTCTAACGTGCAGGCACTGTTCACCGCTGCCAGCATCTTCCAGATCCCAGCCCTCCAAGACCAATGTGCCCAGTTCATGATCAGCCGTTTGGACCCTCAGAACTGCATCGGGGTCTTCATGTTCGCAGATGCTTACGGCCACCAGGAGTTGCGGGAGCGCTCGCAGGATTACATCCGCAAGAAGTTCCTGTGCGTGATGGGAGAGCAGGAGTTCCTTCATCTGACCAAAGAACAGCTGGTCAGCATTCTCAACAGTGACGATCTTAACGTGGAAAAAGAGGAGCATGTGTACGAAAGCATCGTGCACTGGTTGGAGTATGACTGCTCACGTCGGGAGGCAGATTTACCTGAGGTTTTTGCCAAATGCATCCGCTTGCCCCTGCTGGACGAGGCCTTTCTGAGCCGTATACCCCAAGCCTTCGCCCTGGCCTTGTCCAGGGATCCCTCGGATAAGGGTCGGCTCAATGGCACCAATGGCTGCCCGCAACGGCTGGGTATGACTGCTTCCGAGATGGTCATCTGCTTCGACGCGGCTCACAAGCACTCAGGGAAGAAGCAGACCGTGCCTTGCCTGGACATTGTTGCCGGGAAGGTGTACAAGCTTTGCAAGCCACCCAATGACCTCAGAGAGGTTGGCATTTTGGTCTCGTCAGAGAACGACATCTTCATCGCTGGAGGCTATCGGCCGAGCAATAGTGAGGTGTGCATCGACCATCGCGCAGAAAGTGACTTCTGGCAGTACGAGCATGCTGGCAACAGGTGGCTTCCGCGATCGCCCATGCTACGGGCGCGCATCGGCTGCAGGCTAGTGCACTGCTACGGGAAGCTCTACGCTTTGGGCGGACGAGTGTATGGGGACGGACGAAATGCTTTGAAATCTGTGGAGTGCTATGATGCCAGAGACAACTGCTGGACAGCGGTCAGTCCCATGCCAGTGGCCATGGAGTTCCACAGCACAGTAGAGTATAAGGATCGCATCTATGTGCTGCAAGGAGaatactttttctgttttgaccCTCGCAAAGATTACTGGGGGCATTTACCATCCATGAACGTTCCCCGCACCCAAGGATTGGCCGTGTACAAAAACTGCATCTACTACATAGCAGGCATCTGCAGGAACCACCAGCGCACGTTTACTGTGGAGGTGTACGATATCGAGCAGAACACCTGGTGCCGTAAGAGACCCCCCTTCGATCAAGCGACCAGCCCCTACATCAAGGTGCTTTTGCTTCAGGGCAGATTGCATCTGTTTGTTCGAGCTACACAAGTCATGGTAGAAGAACATGTGTTTCGCACCAGCCGCAAGAATTCTCTCTACCACTACGACGATGAAGCTGACCAATGGACAAAGGTCTACGAGACGCCGGACCGCCTCTGGGACCTCGGCCGCCATTTTGAGTGCGTGGTGGCCAAACTATACCCTCAGTGTCTTCAGAAAGTGCTGTGAGTGTTAAGGATGTGCTGTTTGAGACAGCTGATCAATATTTTTGGAGAAGAGGGATGATGGTACTGCTCAGTACATGGTGCTGTTTGTGTCCCCAACACCAGAACTGCAGGGGAAGTCTTAAAGCGTTAAAGGTTTCAATCAATAAACTCGAGGGTGctgtttgaaaaagtaaaaagaaaaaaacaaacaaaaaaaaaccgcAGTATTTTATGTTAGACAATTGTGCACACAGCACCCACACAATCGCTTGTTTTACAGTTAGAAAAGTGAATCATAAGTGcaattatctatttttttttcttgcagatgTTGAGTCGTTTCTGCTCCATTATATCTAaagtttttgttgctgttttggcATGCGTTGTTGGTGAACATGAGCAGTTGATGTCCTTAAGGACAAGCAGTATGTCAACagttgagtaaaaaaaaaaaaaaaaaataaataggt

Function

symbol description
kbtbd8 Predicted to be involved in neural crest cell development; neural crest formation; and protein monoubiquitination. Predicted to act upstream of or within regulation of translation. Predicted to be located in Golgi apparatus and spindle. Predicted to be part of Cul3-RING ubiquitin ligase complex. Is expressed in several structures, including adaxial cell; diencephalon; neural plate; primordial germ cell; and tail bud. Orthologous to human KBTBD8 (kelch repeat and BTB domain containing 8).

NR:

description
PREDICTED: kelch repeat and BTB domain-containing protein 8

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0005819 spindle cellular_component

KEGG:

id description
K10475 KBTBD8; kelch repeat and BTB domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251424.1 True 2359 mRNA 0.51 7 17449267 17454774

Neighbor

gene id symbol gene type direction distance location
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding downstream 265148 17096321 ~ 17184119 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding downstream 456997 16958903 ~ 16992270 (-)
LOC122353589 LOC103358720 coding downstream 557335 16889590 ~ 16891932 (-)
LOC122354367 LOC103358720 coding downstream 680204 16766373 ~ 16769063 (-)
LOC122354689 kcnmb2,LOC107600278,LOC107656067,LOC107699784 coding downstream 788652 16655132 ~ 16660615 (-)
LOC122353782 LOC107727791,LOC107581429,LOC107691380 coding upstream 123551 17578325 ~ 17590223 (-)
LOC122354584 si:ch211-232b12.5,LOC107727806,LOC107655055,LOC107562773,LOC107749476,LOC107599616,LOC107685688 coding upstream 227286 17682060 ~ 17692681 (-)
LOC122354069 NA coding upstream 347619 17802393 ~ 17805778 (-)
LOC122354072 NA coding upstream 355146 17809920 ~ 17813328 (-)
eogt eogt,LOC107729408,LOC107558884 coding upstream 597239 18052013 ~ 18064487 (-)
G82578 NA non-coding downstream 1586 17447159 ~ 17447681 (-)
G82496 NA non-coding downstream 450401 16998661 ~ 16998866 (-)
G82447 NA non-coding downstream 800713 16610565 ~ 16648554 (-)
G82445 NA non-coding downstream 839559 16606799 ~ 16609708 (-)
G82437 NA non-coding downstream 860507 16588394 ~ 16588760 (-)
LOC122353733 NA non-coding upstream 10384 17465158 ~ 17476011 (-)
G82582 NA non-coding upstream 80074 17534848 ~ 17546075 (-)
G82577 NA non-coding upstream 107367 17562141 ~ 17563010 (-)
G82606 NA non-coding upstream 180029 17634803 ~ 17642527 (-)
LOC122354623 NA non-coding upstream 186262 17641036 ~ 17642527 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other downstream 536693 16778912 ~ 16912574 (-)
LOC122353776 NA other downstream 842687 16604004 ~ 16606580 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other downstream 855337 16590806 ~ 16593930 (-)
LOC122354045 NA other downstream 1834330 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 1872202 15552356 ~ 15577065 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 82729 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 95807 17550581 ~ 17559836 (-)
G82590 fam120a,LOC107581418,LOC107685640,LOC107691381,LOC107749502,LOC107556189 other upstream 118828 17573602 ~ 17576984 (-)
LOC122354622 NA other upstream 180032 17634806 ~ 17640897 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other upstream 259978 17714752 ~ 17716696 (-)

Expression


Co-expression Network