LOC122353608 (LOC107658808,LOC107568054,LOC107750169)


Basic Information

Item Value
gene id LOC122353608
gene name LOC107658808,LOC107568054,LOC107750169
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3683809 ~ 3688280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251425.1
GTCCCGATAGGATCAATACCAACAGCTAAATCCTTCTAGAGTAGATTATTTTGAGATATCAAGCAAAATATGTTTACTGCGTAAATCAGACGggtttattaaaatgctaattcattcctGCCAGCAGGAGGTGCTTTAAGCACGAGAAATTAAGGTTTCCCTTAATGGCTGTAGACGCAGCTCTTGAGTTTTCAACTTTTTTCTAACATGCgggatgaaatgaaaatgacattttctaaatacaATGTAATACATGTATGGGAAAACACATCACCATAGGCTGGTGTTCCCGAAGAAACCGTCTATAAGCGAAGTTTGGTTTTTAAATCCTACACGGCgcttcatattttagttttacttctCGTCTCTGTCAACGCTTCACACTCCTGTCCAGTTGGCGGCGGTACGGCGGCATTTCTACTGGTGTCCCAGCCAATGTAAGcatcaaaagaagaagaagcagaagcagcacatagacaaaaaaatatatatataaatatacatatatatatacattaagaTGGGACTTGTGTCTATTCATTCGTTTTTAATTAAGCGAATGACAGCAGTAGCTGAAGAAATATTTAACACTCTTAAAGAGAATATGATTGAATATGAGCAGGAGATCGAGCGCCTGAAGCAGGAGAACTGTTGTCTGAGGAGCGCACTGACTGAAACACACCATGACACTCAGGAAGATGCAGTTCCACAAGGTGCAGTGGGTTTAGAGCTCTCAGAAATACAAGTAAAGATGGAGGTTGCCACCGTGCTGTCTCACGAGCCTTTGACTCACGAAGCTTCTACTATAACTTCAGCTCTTTCTGAAGATTTTAAATGGCAGGAAACTGATCAGTCCCTCTCACTTCTGCCGAATGTGATGTCGAAGAATGCAGATCTGCTGTCATCTGTCACAGTCAAGTCGGAGTGGTGTGATGATCAGACCAGTGAATCAAACTCATCTGCAGTGCAGTCTGGGAGGGATTGTAACTCTGAAATCGCAGCTCCCGAACAAGACCCTTCGTCTCCTCAACTTTGCATTGAAACTTCTGATGAGGTGGTACAAAAGGCAATTAAAAATCACCAGAAAACATCAGTGTGCAAAATTTGTAGCAAGTCTTTTAGCACCAAAGGAAGTTTGCAGAGACACATGCTTGTCCACCAGAACATGACACCTTTCTGCTGTGGTTCACGTGGCAGTCATTTTAAATCCAAACTCCACTTGAAAGAGCACGAGAAACTCCATACAGAAAAACGAGTAAAGCATCAGACAGAAGAACCAGTCAATTCACAGCTCTCCCACGTGGAAATAACATGGCAGCAGGACAGTGTAAATGTGAATGCAAACTCACAGCAGTCTACCAGGTTAAGTCTCCGTGCTCAGGGCTCTAGGAAACTTCCTTTTCATTGCAAGATACGTGACAGACCATTCAGACATCAAAAGAGCATGAAGAACCACATGCTTTCGCACCAAGGTGATCGAAACTACCCGTGTATATTTTGCGGCAGAAGGTTTCTTAAGAGCTGGCATCTTGCGGAGCATTTAAGAattcacactggagaaaaaccatttggatgcaataaatgtggaaaaatgTTTGTTCAGTGGAATCAGGCCAGATCACATATAATTAAGCATCATGAAGGAGATATGTCACTGCTGTcaaaggaaaaaatgtaaacctgtacatcatttcttgtgtttaccACCTCTTTAACAAGGAAATTAGAATagtaatgttattttgaatttcGAATGTCATGTTAGACTTTTATCtcattttttgcaaatgtgtATTCTTCCTTTATCTCATGTCTGGCATTAAAGGTATAGTTtacgcaaaaatgaaaatgaccccatgatttactcaacCTTAAGGTGTAGCCTAtaagactttcttctttcagatgaatacagtcaaaattacatttaaaaatggctcTTCCAAACTATAATGATAGTGAATGGGTGTTGAGGTTTTGAAGTCCAATGAAGTGCatctattcataaaaaaaagtgcttcacATGGATCTGGGGGGTTAATAAAGGGCTTCTGAAGTCAATGCTTTTGCTAGTCTCATAAGAACCAC
>XM_043251426.1
GGTAGACGTCCCGATAGGATCAATACCAACAGCTAAATCCTTCTAGAGTAGATTATTTTGAGATATCAAGCAAAATATGTTTACTGCGTAAATCAGACGggtttattaaaatgctaattcattcctGCCAGCAGGAGGTGCTTTAAGCACGAGAAATTAAGGTTTCCCTTAATGGCTGTAGACGCAGCTCTTGAGTTTTCAACTTTTTTCTAACATGCgggatgaaatgaaaatgacattttctaaatacaATGTAATACATGTATGGGAAAACACATCACCATAGGCTGGTGTTCCCGAAGAAACCGTCTATAAGCGAAGTTTGGTTTTTAAATCCTACACGGCgcttcatattttagttttacttctCGTCTCTGTCAACGCTTCACACTCCTGTCCAGTTGGCGGCGGTACGGCGGCATTTCTACTGGTGTCCCAGCCAATGTAAGcatcaaaagaagaagaagcagaagcagcacatagacaaaaaaatatatatataaatatacatatatatatacattaagaTGGGACTTGTGTCTATTCATTCGTTTTTAATTAAGCGAATGACAGCAGTAGCTGAAGAAATATTTAACACTCTTAAAGAGAATATGATTGAATATGAGCAGGAGATCGAGCGCCTGAAGCAGGAGAACTGTTGTCTGAGGAGCGCACTGACTGAAACACACCATGACACTCAGGAAGATGCAGTTCCACAAGGTGCAGTGGGTTTAGAGCTCTCAGAAATACAAGTAAAGATGGAGGTTGCCACCGTGCTGTCTCACGAGCCTTTGACTCACGAAGCTTCTACTATAACTTCAGCTCTTTCTGAAGATTTTAAATGGCAGGAAACTGATCAGTCCCTCTCACTTCTGCCGAATGTGATGTCGAAGAATGCAGATCTGCTGTCATCTGTCACAGTCAAGTCGGAGTGGTGTGATGATCAGACCAGTGAATCAAACTCATCTGCAGTGCAGTCTGGGAGGGATTGTAACTCTGAAATCGCAGCTCCCGAACAAGACCCTTCGTCTCCTCAACTTTGCATTGAAACTTCTGATGAGGTGGTACAAAAGGCAATTAAAAATCACCAGAAAACATCAGTGTGCAAAATTTGTAGCAAGTCTTTTAGCACCAAAGGAAGTTTGCAGAGACACATGCTTGTCCACCAGAACATGACACCTTTCTGCTGTGGTTCACGTGGCAGTCATTTTAAATCCAAACTCCACTTGAAAGAGCACGAGAAACTCCATACAGaAATCAAACAAATGACTGTTTCTCCAACTACAATCATCTCAAGCGTCACAAAATAGGAGAGGATCTTCCCTGAAACCTCAAAATGTTGATAGAAAAACGAGTAAAGCATCAGACAGAAGAACCAGTCAATTCACAGCTCTCCCACGTGGAAATAACATGGCAGCAGGACAGTGTAAATGTGAATGCAAACTCACAGCAGTCTACCAGGTTAAGTCTCCGTGCTC

Function

NR:

description
PREDICTED: zinc finger protein 546-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251425.1 True 2088 mRNA 0.40 3 3683809 3688273
XM_043251426.1 False 1478 mRNA 0.42 4 3684518 3688280

Neighbor

gene id symbol gene type direction distance location
LOC122354690 NA coding downstream 4883 3678762 ~ 3678926 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding downstream 226875 3454410 ~ 3456934 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding downstream 298018 3381485 ~ 3385791 (-)
pusl1 NA coding downstream 384747 3285961 ~ 3299062 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding downstream 419695 3256879 ~ 3264114 (-)
cdh27 LOC107654208,LOC107730486,LOC107568064 coding upstream 2880 3691160 ~ 3702206 (-)
si:ch211-253b8.5 si:ch211-253b8.5,LOC107653378,LOC107568061,LOC107592587,LOC107680420,LOC107730476 coding upstream 16292 3704572 ~ 3715578 (-)
bmp7a bmp7a,LOC107730480,LOC107657209,LOC107568055,LOC107751030,LOC107658719 coding upstream 44702 3732982 ~ 3742362 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516,LOC107592586 coding upstream 59213 3747493 ~ 3749711 (-)
zgc:113223 zgc:113223,LOC107698001,LOC107556176,LOC107745344 coding upstream 97251 3785531 ~ 3791150 (-)
G79010 NA non-coding downstream 26520 3654282 ~ 3657289 (-)
G78969 NA non-coding downstream 268885 3412874 ~ 3414924 (-)
G78919 NA non-coding downstream 416134 3266756 ~ 3267675 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding downstream 417137 3266184 ~ 3266672 (-)
G78903 NA non-coding downstream 451067 3231127 ~ 3232742 (-)
G79069 NA non-coding upstream 28409 3716689 ~ 3719414 (-)
G79075 tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025 non-coding upstream 64650 3752930 ~ 3759723 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding upstream 91719 3779999 ~ 3780317 (-)
G79126 NA non-coding upstream 420824 4109104 ~ 4112070 (-)
G79172 NA non-coding upstream 686368 4374648 ~ 4375393 (-)
G79003 NA other downstream 142754 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 427597 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 570117 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 635585 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 697278 2986458 ~ 2986531 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 125225 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 224968 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 273701 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 2050736 5739016 ~ 5765140 (-)
G79565 NA other upstream 2407853 6096133 ~ 6096480 (-)

Expression


Co-expression Network