avil (avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443)


Basic Information

Item Value
gene id avil
gene name avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 374160 ~ 385324 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251510.1
GTCTCGTTGGCATCAGAGATAACCCTGGACTCAGACTGGACTTCACAGCAGCCTTCAGCCGTCCGAGGAGAAGCATCTCTACACATCTTCAGTCTCTGCTGGACTTCTCTTCAGCTCCAGTGAAAGCTGCTTCAACGGAAACACTGCTTTACGCTCATCTAAAGTCAAAAACCTCCGGCCGAATCATGCAGCACACCTTCAGAGCCATCACACACTCGCCGGGGATTCTCGTCTGGAGGATCGAGAAAATGGATCTCGTTTTGGTGCCGGAAAAATTTCACGGACAGTTTTATGAAAGTGACTGCTATTTATTGCTCTCAACACGCAAAACTGGCAAATCTGCATACTATGACATTCATTACTGGATCGGCTCCACGTCGTCTCTGGATGAGCAGGGTGCTGCGGCCGTCTACGCTGTCCAGCTGGACGAGTTCCTGGGTTCCTCGCCCATCCAGCACCGCGAGGTCCAGCACCACGAGTCCAGCATCTTCTGCGGATACTTCAAACAGGGCATCATTTATAAGTCAGGAGGGGTTGCATCGGGAATGAACCACGTGGAGACAAACacctacaacatccagagactgCTGCATGTGAAAGGGAAGAGGAAAGTGACCGGCACCGAGGTGGAAATGAGCTGGAAGAGCTTTGACACGGGGAGTGTGTTTCTGCTGGACCTGGGCAGGACCATCATCCAGTGGAACGGCCCTGAAAGCAACAAACAAGAACGTCTGAAGGGCATGATGCTGGCCAAGGACATCAGGGATCGAGAGAGAGGCGGCCGGCTGGAGATCGGCGTGATCGAAGGCGATGCGGAGGCAAACTCTCCGTCAGTAATGGAGCTGATGGTCAGTATTCTGGGAGACCGGCCCTCCACGCTGCCCAGCGGGACACCGGACGAAGTGACCGACCGGGAGCAAATGTCTAAGCTCACCCTTTATCACGTGTCAGATGCCAACGGAACCATGAACATCACAGAGATCGCCACCAGTCCGCTCACACAGGACATGCTCAATCACGACgaCTGCTATATTCTGGATCAGGGAGGCATGTCTATATTTGTGTGGAAGGGAAAGACGGCCAACAAAGCTGAGAGACAAGCAGCGATGAGCCGAGCTCTGGAGTTCATTAAAGTAAAGGGTTACCCGCTCACTACTAAAGTGGAGGCTCTCAGCGACGGAGGAGAATCGTCTCTCTTCAAACAGCTCTTCAAGAgctggagggtcagagagcagACGGCAGGCCTGGGCCGGACACACACCGTGGGGAGAGTGGCTGATGTCACTCAAGAGAAGTTTGATGCCACCCGGATGCACGTGATGTCTGACGTTGCTGCACAGGAGCGCTTGGTGGACGACGGCAGCGGACAGAAGCAGGTGTGGCGCATTGAGAAGCTGGAGCTGGTGGAGGTGGAGCCTGAAATGCACGGATACTTCTATGGAGGCGACTGCTATCTGATTCTCTACAGCTACGATGTTCACGGCAGGAACAACTACATTCTTTACATGTGGAAGgGCCGTCATGCGTCTCAGGACGAGGTGACGGCGTGTGCGTATCAGGCAGTGACTCTGGACCAGCAGTACGGAGATCAGCCTGTTCAAGTCAGAGTCTGCATGGGGAAGGAACCACGGCACTTCATGGCCATCTTCAAGGGCAAGATGGTCATCTTCGAGGGAGGGACGTCCAGAAAGAGTGCCCCGGAGCCGGAGCCGCCCGTCCGTCTGTTTCAGATCTGCGGCTCTCACCCCACCAACACCAAAGCTATAGAGGTGCCTGCTCTGGCGGCCTCGCTCAACTCCAACGACGTCTTCCTCCTGAAGAGCCAGAGCGGCATCTACCTGTGGTATGGCAAAGGCTCCAGTGGAGACGAACGGGCCATGGCAAAGGAGGTGGCCTTCTTCATCGGTCGAGGCTCATCAGAGGAGATCATGGCTGAGGGACAGGAACCATACGAGTTCTGGGAAATCTTAGGAGGAAAAGGACCGTATGCAAGTGACAGAAGATTACAGCAGGTTACTCTAGACCACCAGCCGCGTCTCTTTGAGTGCTCCAACAAGACCGGCCAGTTCATCGCCACCGAGGTAACCCAGTTCACTCAGGAGGATCTGAGGGAGGACGACGTCATGCTTTTGGACACGTGGGATCAGGTCTTTCTCTGGATAGGAAATGAAGCCAATGAAGTGGAGCGTAAGGAATCGGTGACAATCTGCCAGGAATACCTGCGCACTCATCCTGGATCCCGGGACCCCGACACGCCGGTGATCATGGTGAAGCAGGGCTTCGAGCCTCCCACCTTCACCGGCTGGTTCACGGCCTGGGACGCCACTAAATGGAGCGGCGGAAAAACCTACGAGCAGCTGAAGGAGGAGTTAGGAGAGATTACTCTGCCCACTAAAGTGGACTCTGGATCCAATGGTACGGAGAGTAAAACCGTCTCACAGTATGCACCAGAAATGCTGATCAATAAGCAGTCCGGAGAGCTGCCGGAGAACGTGGACCCCGCTCACAGAGAGAGATATCTTTCTGATGAAGATTTCCGGAGCGTTCTGGGACTCTCCAGAGAACAGTTTGAAGGTTTGCCTCAGTGGAAGCAGAAGACCATCAAGAAGCAAAAGGGATTGTTTTGAAGGAGCCGTGTATTTTTAGAGC

Function

symbol description
avil Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping and cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Human ortholog(s) of this gene implicated in nephrotic syndrome type 21. Orthologous to human AVIL (advillin).

NR:

description
PREDICTED: advillin

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K08017 AVIL; advillin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251510.1 True 2649 mRNA 0.54 20 374160 385324

Neighbor

gene id symbol gene type direction distance location
tegt tegt,LOC107574446,LOC107567938,LOC107684007,LOC107713865,LOC107711598,LOC107698838 coding downstream 1688 367846 ~ 372472 (-)
cdk4 cdk4,LOC107747701,LOC107701179,LOC107567936,LOC106583286 coding downstream 27742 339095 ~ 346418 (-)
LOC122353956 LOC107751587,LOC107552203,LOC107696908,LOC107714543 coding downstream 83810 289980 ~ 290350 (-)
LOC122353951 arfgap1 coding downstream 187309 179559 ~ 186851 (-)
LOC122353658 NA coding downstream 366370 5676 ~ 7790 (-)
si:ch1073-456m8.1 NA coding upstream 710 386034 ~ 394186 (-)
LOC122353667 cyp27b1,LOC107747831,LOC107561793,LOC107684010 coding upstream 20697 406021 ~ 412585 (-)
mettl1 mettl1,mettl1-b coding upstream 29078 414402 ~ 425665 (-)
vgll4b vgll4,vgll4b,LOC107750033,LOC107697562,LOC107570332 coding upstream 526351 911675 ~ 933876 (-)
tamm41 tamm41 coding upstream 548528 933852 ~ 939272 (-)
G78132 NA non-coding downstream 70942 160995 ~ 303218 (-)
G78150 NA non-coding downstream 101196 271740 ~ 272964 (-)
G78149 NA non-coding downstream 102803 270980 ~ 271357 (-)
G78140 NA non-coding downstream 136261 237488 ~ 237899 (-)
G78109 NA non-coding downstream 305891 67765 ~ 68269 (-)
G78162 NA non-coding upstream 45670 430994 ~ 431422 (-)
G78164 NA non-coding upstream 46363 431687 ~ 438660 (-)
G78167 dusp7,LOC107561798,LOC107677944,LOC107697567,LOC107712495 non-coding upstream 72969 458293 ~ 506641 (-)
G78192 NA non-coding upstream 207291 592615 ~ 594641 (-)
LOC122353904 NA non-coding upstream 333951 719275 ~ 721631 (-)
LOC122354324 arfgap1 other downstream 45121 322213 ~ 329039 (-)
LOC122353949 prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370 other downstream 85214 282263 ~ 288946 (-)
LOC122354323 LOC107706475,LOC107589231,LOC107700775,LOC107591713,LOC107703600,LOC107722831 other downstream 93583 274866 ~ 280577 (-)
LOC122353952 cdk4,LOC107747701,LOC107567936,LOC107701179,LOC106583286 other downstream 148329 217174 ~ 225831 (-)
LOC122353669 mettl21b,LOC107684011 other upstream 17616 402940 ~ 405411 (-)
G78144 alas1 other upstream 58561 443885 ~ 448901 (-)
G78170 NA other upstream 67810 453134 ~ 455998 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other upstream 213783 599107 ~ 794136 (-)
LOC122353728 NA other upstream 587630 972954 ~ 974787 (-)

Expression


Co-expression Network