nuf2 (nuf2,LOC107570127,LOC107550318)


Basic Information

Item Value
gene id nuf2
gene name nuf2,LOC107570127,LOC107550318
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1098493 ~ 1105706 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251513.1
ACTTGGTTAGTAAAATAGTTTGGTATTACTTGTAGAGTTTCAATAATGTCGGACCAACAGTGTGACAAAGATGCAGACATGGCTGAAAACACTTTCCCGGTGTACAAGGTGGATACAATTGTGCAGTTCTACCGGACCGAGGTTTTGATCGGACAGGAGGCTAAGCATTTTACCAAGAATGATATCACTCCGAACCCAAAGGCCGAATCCATCCAGAGACTCTACATGAGAGTTTTGCAGCTTCTTTTTCGCTTCAGACCCGAGTGCCATTACGCCGTTCCCTTGTCTGAAAATGTCCAGCACCCGATGCTGTACGAGGCGGTGACCCCGGTCATGAGTGTTTACATGCGCATGTGCCAGTTCTTACCACTTTGTCACGTGTTTGATTTTTCTCTCAATGACTTGCTCAACCCCAAGAGCAAGCGCACAGTCATCATACTGAGTGCAATCCAGAATTTCCTGCAGTTCAGGAAGCAGAGGCTGGAGATAACTGCTGCCCATCAGCAATGTTTTcGGTCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAGGAAGCTGAGAGAAAGATTGACAAACTGACTACCATACCTCCAGAGCAGCAAGCAGAGGCTAAAGAGCTAGCAAACGCTCTGGCAGAACTGACCACTAACACGCAGCATGAGTACCAGGATGTGagCGCAATGAATGAAACGGTTGCACAGTGCAAGACTGAAATTGCTGAATTATCACAGAAATTGACTCAGAGGAAAGTGGATGTGGCCACACTGAAGGATGAGATCGTCAAGCTCAAGTCTCAAATTGTGGAGTCACCCGAAGAgctaaaaaatgaaatggaaaggATGAAAGAGAATGTGAAGAGCATTAGGATGTCAAAAGAGCTCGCCGATGAGAGGTTGGTGGAACTCCAGATGTTGGTGCAGTGTGCGAGTCAGGTGGAGGCAGAAATCCAGGTCTTACTCAAACAACTGCAGGACTTACAGAGCAGTATGTGCAAGACCAACCAGCAAAAAGAGGAGGTCCAGAGTTTAGCGGCCATGAATGAGAACTTGCAGAAGGAGCTGAAAAGCCTGAGCAATGAAGAGGCCCAGCTAAAGAGGGCTCTTGCCATGAAACTGGACAAGGAGTCTAAACAACAGATCCGTCgacagaagaaaaaagaggTGAAGGATCAGcaagtcaaaaatatttacGGgcaATATGACAAAATCCACCAGAAACGGGAGGAGATTGTAAAAAGGATAGAAGAAAGCAACCGTGAAACCAAACGGTTCAGGGAAAAGATGCAGAAGCTTAGAGAAAAGTGCAACCAGCAAACTCAAAAGGCCCAGGAATTCTATGAGCATCTTCTCACAACTTTGGAGCAGTACAACAAGAGAATTGAGGGCATTGTGGTGGAGACCAATGCagacactttaaaaatgaagtcACACTTCtaaaatttcagttttataCTCTACTGTTATTTCAAATTCCTGCCTTTTGTTtagtgtctgtgtttttgtcatttctaaatgtatttttccttaACAGAATTGTATTTGGATGTTAGGTGGCAAAAAGTTTCTTATTGGTTTACCTGTACAGGGAATAGACTTAACTCCTAACACTTGTGGttcttttataaaacacatttattggtAACATTTGAATTTTCCCTGTTCAAATGAAGCATTATTGGATGCGT
>XM_043251514.1
TCCGAGCGTAAACTTGGTTAGTAAAATAGTTTGGTATTACTTGTAGAGTTTCAATAATGTCGGACCAACAGTGTGACAAAGATGACATGGCTGAAAACACTTTCCCGGTGTACAAGGTGGATACAATTGTGCAGTTCTACCGGACCGAGGTTTTGATCGGACAGGAGGCTAAGCATTTTACCAAGAATGATATCACTCCGAACCCAAAGGCCGAATCCATCCAGAGACTCTACATGAGAGTTTTGCAGCTTCTTTTTCGCTTCAGACCCGAGTGCCATTACGCCGTTCCCTTGTCTGAAAATGTCCAGCACCCGATGCTGTACGAGGCGGTGACCCCGGTCATGAGTGTTTACATGCGCATGTGCCAGTTCTTACCACTTTGTCACGTGTTTGATTTTTCTCTCAATGACTTGCTCAACCCCAAGAGCAAGCGCACAGTCATCATACTGAGTGCAATCCAGAATTTCCTGCAGTTCAGGAAGCAGAGGCTGGAGATAACTGCTGCCCATCAGCAATGTTTTcGGTCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAGGAAGCTGAGAGAAAGATTGACAAACTGACTACCATACCTCCAGAGCAGCAAGCAGAGGCTAAAGAGCTAGCAAACGCTCTGGCAGAACTGACCACTAACACGCAGCATGAGTACCAGGATGTGagCGCAATGAATGAAACGGTTGCACAGTGCAAGACTGAAATTGCTGAATTATCACAGAAATTGACTCAGAGGAAAGTGGATGTGGCCACACTGAAGGATGAGATCGTCAAGCTCAAGTCTCAAATTGTGGAGTCACCCGAAGAgctaaaaaatgaaatggaaaggATGAAAGAGAATGTGAAGAGCATTAGGATGTCAAAAGAGCTCGCCGATGAGAGGTTGGTGGAACTCCAGATGTTGGTGCAGTGTGCGAGTCAGGTGGAGGCAGAAATCCAGGTCTTACTCAAACAACTGCAGGACTTACAGAGCAGTATGTGCAAGACCAACCAGCAAAAAGAGGAGGTCCAGAGTTTAGCGGCCATGAATGAGAACTTGCAGAAGGAGCTGAAAAGCCTGAGCAATGAAGAGGCCCAGCTAAAGAGGGCTCTTGCCATGAAACTGGACAAGGAGTCTAAACAACAGATCCGTCgacagaagaaaaaagaggTGAAGGATCAGcaagtcaaaaatatttacGGgcaATATGACAAAATCCACCAGAAACGGGAGGAGATTGTAAAAAGGATAGAAGAAAGCAACCGTGAAACCAAACGGTTCAGGGAAAAGATGCAGAAGCTTAGAGAAAAGTGCAACCAGCAAACTCAAAAGGCCCAGGAATTCTATGAGCATCTTCTCACAACTTTGGAGCAGTACAACAAGAGAATTGAGGGCATTGTGGTGGAGACCAATGCagacactttaaaaatgaagtcACACTTCtaaaatttcagttttataCTCTACTGTTATTTCAAATTCCTGCCTTTTGTTtagtgtctgtgtttttgtcatttctaaatgtatttttccttaACAGAATTGTATTTGGATGTTAGGTGGCAAAAAGTTTCTTATTGGTTTACCTGTACAGGGAATAGACTTAACTCCTAACACTTGTGGttcttttataaaacacatttattggtAACATTTGAATTTTCCCTGTTCAAATGAAGCATTATTGGATGCGT
>XM_043251515.1
GGCGCGTAAAGTTTAAATTTGCTTCAGTTGACGGCGGGGACTCCGAGCGTAAACTTGCAGACATGGCTGAAAACACTTTCCCGGTGTACAAGGTGGATACAATTGTGCAGTTCTACCGGACCGAGGTTTTGATCGGACAGGAGGCTAAGCATTTTACCAAGAATGATATCACTCCGAACCCAAAGGCCGAATCCATCCAGAGACTCTACATGAGAGTTTTGCAGCTTCTTTTTCGCTTCAGACCCGAGTGCCATTACGCCGTTCCCTTGTCTGAAAATGTCCAGCACCCGATGCTGTACGAGGCGGTGACCCCGGTCATGAGTGTTTACATGCGCATGTGCCAGTTCTTACCACTTTGTCACGTGTTTGATTTTTCTCTCAATGACTTGCTCAACCCCAAGAGCAAGCGCACAGTCATCATACTGAGTGCAATCCAGAATTTCCTGCAGTTCAGGAAGCAGAGGCTGGAGATAACTGCTGCCCATCAGCAATGTTTTcGGTCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAGGAAGCTGAGAGAAAGATTGACAAACTGACTACCATACCTCCAGAGCAGCAAGCAGAGGCTAAAGAGCTAGCAAACGCTCTGGCAGAACTGACCACTAACACGCAGCATGAGTACCAGGATGTGagCGCAATGAATGAAACGGTTGCACAGTGCAAGACTGAAATTGCTGAATTATCACAGAAATTGACTCAGAGGAAAGTGGATGTGGCCACACTGAAGGATGAGATCGTCAAGCTCAAGTCTCAAATTGTGGAGTCACCCGAAGAgctaaaaaatgaaatggaaaggATGAAAGAGAATGTGAAGAGCATTAGGATGTCAAAAGAGCTCGCCGATGAGAGGTTGGTGGAACTCCAGATGTTGGTGCAGTGTGCGAGTCAGGTGGAGGCAGAAATCCAGGTCTTACTCAAACAACTGCAGGACTTACAGAGCAGTATGTGCAAGACCAACCAGCAAAAAGAGGAGGTCCAGAGTTTAGCGGCCATGAATGAGAACTTGCAGAAGGAGCTGAAAAGCCTGAGCAATGAAGAGGCCCAGCTAAAGAGGGCTCTTGCCATGAAACTGGACAAGGAGTCTAAACAACAGATCCGTCgacagaagaaaaaagaggTGAAGGATCAGcaagtcaaaaatatttacGGgcaATATGACAAAATCCACCAGAAACGGGAGGAGATTGTAAAAAGGATAGAAGAAAGCAACCGTGAAACCAAACGGTTCAGGGAAAAGATGCAGAAGCTTAGAGAAAAGTGCAACCAGCAAACTCAAAAGGCCCAGGAATTCTATGAGCATCTTCTCACAACTTTGGAGCAGTACAACAAGAGAATTGAGGGCATTGTGGTGGAGACCAATGCagacactttaaaaatgaagtcACACTTCtaaaatttcagttttataCTCTACTGTTATTTCAAATTCCTGCCTTTTGTTtagtgtctgtgtttttgtcatttctaaatgtatttttccttaACAGAATTGTATTTGGATGTTAGGTGGCAAAAAGTTTCTTATTGGTTTACCTGTACAGGGAATAGACTTAACTCCTAACACTTGTGGttcttttataaaacacatttattggtAACATTTGAATTTTCCCTGTTCAAATGAAGCATTATTGGATGCGT
>XM_043251517.1
TAGAGGGCGCTGCACGCGTTGTTTACGCGACTCCTCGTGACGTAAGGACGCAAGGCGGAAGTGACGACAGAGGCGCGTAAAGTTTAAATTTGCTTCAGTTGACGGCGGGGACTCCGAGCGTAAACTTGACATGGCTGAAAACACTTTCCCGGTGTACAAGGTGGATACAATTGTGCAGTTCTACCGGACCGAGGTTTTGATCGGACAGGAGGCTAAGCATTTTACCAAGAATGATATCACTCCGAACCCAAAGGCCGAATCCATCCAGAGACTCTACATGAGAGTTTTGCAGCTTCTTTTTCGCTTCAGACCCGAGTGCCATTACGCCGTTCCCTTGTCTGAAAATGTCCAGCACCCGATGCTGTACGAGGCGGTGACCCCGGTCATGAGTGTTTACATGCGCATGTGCCAGTTCTTACCACTTTGTCACGTGTTTGATTTTTCTCTCAATGACTTGCTCAACCCCAAGAGCAAGCGCACAGTCATCATACTGAGTGCAATCCAGAATTTCCTGCAGTTCAGGAAGCAGAGGCTGGAGATAACTGCTGCCCATCAGCAATGTTTTcGGTCTGATATGGACCGACTCCAGGCATACACAAGAGAAATAAAGGAAGCTGAGAGAAAGATTGACAAACTGACTACCATACCTCCAGAGCAGCAAGCAGAGGCTAAAGAGCTAGCAAACGCTCTGGCAGAACTGACCACTAACACGCAGCATGAGTACCAGGATGTGagCGCAATGAATGAAACGGTTGCACAGTGCAAGACTGAAATTGCTGAATTATCACAGAAATTGACTCAGAGGAAAGTGGATGTGGCCACACTGAAGGATGAGATCGTCAAGCTCAAGTCTCAAATTGTGGAGTCACCCGAAGAgctaaaaaatgaaatggaaaggATGAAAGAGAATGTGAAGAGCATTAGGATGTCAAAAGAGCTCGCCGATGAGAGGTTGGTGGAACTCCAGATGTTGGTGCAGTGTGCGAGTCAGGTGGAGGCAGAAATCCAGGTCTTACTCAAACAACTGCAGGACTTACAGAGCAGTATGTGCAAGACCAACCAGCAAAAAGAGGAGGTCCAGAGTTTAGCGGCCATGAATGAGAACTTGCAGAAGGAGCTGAAAAGCCTGAGCAATGAAGAGGCCCAGCTAAAGAGGGCTCTTGCCATGAAACTGGACAAGGAGTCTAAACAACAGATCCGTCgacagaagaaaaaagaggTGAAGGATCAGcaagtcaaaaatatttacGGgcaATATGACAAAATCCACCAGAAACGGGAGGAGATTGTAAAAAGGATAGAAGAAAGCAACCGTGAAACCAAACGGTTCAGGGAAAAGATGCAGAAGCTTAGAGAAAAGTGCAACCAGCAAACTCAAAAGGCCCAGGAATTCTATGAGCATCTTCTCACAACTTTGGAGCAGTACAACAAGAGAATTGAGGGCATTGTGGTGGAGACCAATGCagacactttaaaaatgaagtcACACTTCtaaaatttcagttttataCTCTACTGTTATTTCAAATTCCTGCCTTTTGTTtagtgtctgtgtttttgtcatttctaaatgtatttttccttaACAGAATTGTATTTGGATGTTAGGTGGCAAAAAGTTTCTTATTGGTTTACCTGTACAGGGAATAGACTTAACTCCTAACACTTGTGGttcttttataaaacacatttattggtAACATTTGAATTTTCCCTGTTCAAATGAAGCATTATTGGATGCGT

Function

symbol description
nuf2 Acts upstream of or within heart development. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and pancreatic cancer. Orthologous to human NUF2 (NUF2 component of NDC80 kinetochore complex).

NR:

description
kinetochore protein Nuf2

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11548 NUF2, CDCA1; kinetochore protein Nuf2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251513.1 False 1691 mRNA 0.44 14 1098616 1105706
XM_043251514.1 False 1699 mRNA 0.44 14 1098605 1105706
XM_043251515.1 False 1675 mRNA 0.44 14 1098564 1105706
XM_043251517.1 True 1743 mRNA 0.45 14 1098493 1105706

Neighbor

gene id symbol gene type direction distance location
zgc:77375 zgc:77375,LOC107700631,LOC107758152,LOC108431553,LOC105013113 coding upstream 5420 1083971 ~ 1093073 (+)
isy1 isy1,LOC107700632,LOC108431508,LOC108254962,LOC102298134,LOC101070566 coding upstream 15240 1077539 ~ 1083253 (+)
mkrn2 mkrn2,LOC107742032,LOC107675967,LOC107571211,LOC107571213 coding upstream 44625 1046350 ~ 1053868 (+)
pparg pparg,LOC107571218,LOC107742034,LOC107667870 coding upstream 69276 1003243 ~ 1029217 (+)
syn2b syn2,syn2b,LOC107758022,LOC107742035,LOC107667867 coding upstream 96779 942791 ~ 1001714 (+)
znf831 LOC107558955,LOC107730612,LOC107670927 coding downstream 62446 1168152 ~ 1179799 (+)
ppp1r3db LOC107730614,LOC107551316,LOC107654797,LOC107722003 coding downstream 106141 1211847 ~ 1213545 (+)
acot8 acot8,LOC107670930,LOC107730625,LOC107722006 coding downstream 155077 1260783 ~ 1264227 (+)
srsf6b LOC100690823,LOC103156038,LOC101480010,LOC102289851 coding downstream 158579 1264285 ~ 1269596 (+)
ift52 ift52,LOC107730620 coding downstream 164377 1270083 ~ 1276013 (+)
LOC122353680 NA non-coding upstream 23913 1071074 ~ 1074580 (+)
G78089 NA non-coding upstream 673415 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 690089 405735 ~ 408404 (+)
G78047 NA non-coding upstream 693020 402445 ~ 405473 (+)
G78370 NA non-coding downstream 89518 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 111518 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 170809 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 317027 1422733 ~ 1425764 (+)
G78467 NA non-coding downstream 363962 1469668 ~ 1471384 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 21094 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 58254 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 184694 848175 ~ 913799 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 389003 603138 ~ 709490 (+)
iars1 iars,LOC107697556 other upstream 499122 586415 ~ 599371 (+)
LOC122353696 LOC107670931,LOC107551313 other downstream 81160 1186866 ~ 1191721 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 313814 1419520 ~ 1448960 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 380001 1485707 ~ 1517963 (+)
G78500 NA other downstream 485038 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 538925 1644631 ~ 1726097 (+)

Expression


Co-expression Network