CI01000000_16871696_16877904


Basic Information

Item Value
gene id CI01000000_16871696_16877904
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16871696 ~ 16878004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_16871696_16877904.mRNA
AGCGCCGTCATTTCAAGGCCATGTCCCATAAACGGACTGGTGATGATGCTCAGAAGGGCTTTTCTGTAGCCCGTGGGCTTTTGGGTGACTTTAGTATGGGTGAGACTCACTCGGACCCCTACAGCTCATCTTCCCGGTCACATAGTGGCATGTCTGGTCTGGTTGGAGGGGAGGAAAAAGACCACAACTCTCAGCTGCACCGCCGAGCGGGCAGCCACCTTACTACCCTTAAACTGTTCGCCAGCCTAGGTCTGTCGCCGACTGATCTGGACGCACTGGCGCAGGTTCCAGAGGAGAACATATGCATGGAGAACTTGCCCCATCTTCTCATGCTGCTGAAGAACCACAAGATGGAAGCCAGCTGGGACGACATGCAGGGCGGAAGATTGGACTGTTCCAGTGGGCAGGCACAAAGCCTCTCACAAGGTGACTTCGGTTATACTTCCATGCAAGAAACATCTGGTCGAGGGTACGACATGTTAGATTACAGGAGCGGTAGCGGCAGAGACCGCCAATATTCCGAGCTTTCCCGTGACTCCTACCGCAGCCTCGGCATGTCAGCGTCATCGGCATCTGACGACCTGTTCATGCAGAGAAGAATGGGCACCCCGTCTCAGAGAAAAGTGCAGGATTTCTTGGGAGTCATGCCCCTCATGTTTCCCCATGTGTGCTCTCTTTGTGATTTTGATGTGCTCTCTGTCATGGAATGGACTCAGCACACCACTGGGATTCGTCACTCTGAAAACCGCAAACTCCTTCTGCAAATGTACCCAGACTGGGATCCTCCAATGCCCTCTAGTCTCATGTCGACATCCCTTTCCCTGGACACAAAGAGTTGTTCGGATGGATTGCTGGGAACAGATTCAATTGGTGGTGGACTACAGAGAACAGGGATGAGCTCTAACTGGGGTAATAAATCTATAAAAAGTAGGGTGATCGTGTTAAAATACGAAAGGAAACCGAAGTTAACAAACAGCCTGTTTGACTTGGCAAAACCCTTTGGCACCATCTGTAAGCATCTAGTGCTGAAGAACATGAACAAGGCTTTCCTGGAGCTGCAGACTCATGAGGAGGCTTTGGCCATGGCTAATTATTACAAGCGTAAACCAGCCATTTTGAATGGAAAAGAGATACAAGTTTATTTATCAAAGGAACTGATGGCAATTAAGAAAAGTGGAAGGCCGGACAGAGACACTAGGATCAGAGAGAAGAAAGACGTCAGCAAGGTGGTGTTTTTCTGTAATTTGCCACGGGACAGTGACAAGAAAAAGGAGCTCCTCACAATATCTCGTAGATTTGGCACTGTTGAGAAACATTTCTTTCTAAATAAAGATGCTTATGTTCAAATGAGCAAGGCTGAGGATGCAGAGATGTTAGTGAAGTACTACACTGCCAATCCATTGACTATCAATGGAAGATCCATTCGACTGAACATCTGCTCGAAGTATAAGACTCTAACGGTCCCACCAGGAAATGGCGACCAAGGAAGGGAAGAACCTTCCCGGAAGAGCAGGGATAGCAGGGATAGCAGGAATAGCAGGAGTAGCAGGAGTAGCAAAAGTGCCACCAGCAGAACTACTGATAAACATTCATCAAAGAATCAAAGGTCCTCTACTTCCAAAGCCAAAGAGAGCTCTGATGAGAAAGAAGAGGAACCAAAGCCTGAGGAGGCAGAGGCCGTGGGCGACGGGTCAGGAGATGATGAAGCTGATGTTATGGAAGCATGTGATGAAGATGAAGAGGAGTTTGATGAAGATGCATCTCCAGATGATGTTGACCTATCCTGTGATCCAGAGCAAACAAGTGAACAAGCACCAGATATTGATGATTCCAACATAGAGGATGAGGAGGACCCTGAAGCACAGCAAGCCAGAGATCCCTCCAGCGACGAGACCACAGAGAACCAGAAAGACTCTGGTGAAAAACAGGAAGAGACTCAGCCGGAGGAACCTGCAACATCTGAGGCTGAGCAGGAGAACACAGATGAGCTTCCTAAAGACCTCGAGGAACAGAATGATGACCAACCTGAAGATGAGGGTGCTGAAGAGGACGATGAAGAGCAGGCAAGAGCACATTAGCACATCATCTAAAATGAAAATAATTTGAAAAATGTGCATGTAGATCTTTTGTTCCTTCACCTATGCTCTCACTATCCCTGAAGGATGGCTGAAAATTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_16871696_16877904.mRNA True 2178 mRNA 0.48 9 16871696 16878004

Neighbor

gene id symbol gene type direction distance location
CI01000000_16861880_16863508 NA coding upstream 7919 16860443 ~ 16863777 (+)
CI01000000_16835058_16848950 NA coding upstream 22604 16834920 ~ 16849092 (+)
CI01000000_16781396_16802242 HTR4 coding upstream 69278 16781396 ~ 16802418 (+)
CI01000000_16676128_16679215 SLC26A2 coding upstream 192456 16676036 ~ 16679240 (+)
CI01000000_16611284_16612778 CPLX2, CPLX1 coding upstream 257811 16611284 ~ 16613885 (+)
CI01000000_16878307_16893681 MATR3L1.2 coding downstream 207 16878211 ~ 16894061 (+)
CI01000000_16894331_16900440 NA coding downstream 16231 16894235 ~ 16900443 (+)
CI01000000_16903722_16914680 NA coding downstream 25718 16903722 ~ 16915079 (+)
CI01000000_16919833_16920038 TMEM216 coding downstream 41829 16919833 ~ 16920075 (+)
CI01000000_16922072_16941848 PDE6B, PDE6A coding downstream 44028 16922032 ~ 16942264 (+)
G10968 NA non-coding upstream 134449 16737032 ~ 16737247 (+)
G10956 NA non-coding upstream 180146 16691262 ~ 16691550 (+)
G10912 NA non-coding upstream 244388 16626953 ~ 16627308 (+)
G10911 NA non-coding upstream 245204 16626008 ~ 16626492 (+)
G10903 NA non-coding upstream 287578 16581312 ~ 16584118 (+)
G10937 NA non-coding downstream 23926 16901930 ~ 16902606 (+)
G10934 NA non-coding downstream 43288 16921292 ~ 16921561 (+)
G11019 NA non-coding downstream 118635 16996639 ~ 16996931 (+)
G11028 NA non-coding downstream 126398 17004402 ~ 17004656 (+)
G11039 NA non-coding downstream 137336 17015340 ~ 17015573 (+)
G10201 NA other upstream 941134 15930266 ~ 15930562 (+)
G9201 NA other upstream 2636755 14215024 ~ 14234941 (+)
G7522 NA other upstream 4692688 12178369 ~ 12179008 (+)
G7514 NA other upstream 4734688 12136522 ~ 12137008 (+)
G7153 NA other upstream 5626063 11244457 ~ 11245633 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 461150 17339154 ~ 17346200 (+)
G11465 NA other downstream 1005949 17883953 ~ 17887462 (+)
G11521 NA other downstream 1154735 18032739 ~ 18164112 (+)
G11801 NA other downstream 1802863 18674116 ~ 18745376 (+)

Expression


Co-expression Network