map1lc3c (map1lc3c,LOC107701141,LOC107702025)


Basic Information

Item Value
gene id map1lc3c
gene name map1lc3c,LOC107701141,LOC107702025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11597790 ~ 11599698 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251529.1
GGGACGTGACGTCACGGCCGGCGCGTTATTTAATTAGAGCGTCGGCGCGCGACTCGGCTAATTAGCGCGCGCGCGGGTCAGAGGTGCCGCACGACATGCCTCCGTTAGAGAAAGCGCCGTATCCCAAACCCTTCAAACAGAGGAAGAGTTTAGCGACGAGGAAACAGGAGGTGGCGGGAATCCGGACCAAGTTTCCGACCAAAATCCCGgtgatcATCGAGAGATATCAGAGAGAGAAGTACTTGCCGCCGCTGGATAAGACCAAGTTCCTCGTCCCTCAGGAGCTCACTATGACTCAGTTCGTGACCATCATCAGGAATCGGATGACCCTGATGCCCAATCAGGCGTTCTACCTGCTGATCAATAACTCGGGCATCGCCAGCATGTCCCTGACCATGGCTCAGCTCTACAAGGACCACAAAGACGAGGACGGCTTCCTGTACATGACGTACGCTTCACAGGAGATGTTTGGACGCCGGTGACGCCGCCGCTCTCGCTCGCTTCACCGGACTGTGACGAAATATTTAAAGTCTTTGTATATAACGTTAGCCTTTTAGATATACTATTCGTTTTCTAATGTATGTTTTAACGGAgtaataaaagtgtttaatttgtGCATCGGTCACTAGAGGGAGACGTCTGTCCGTGTGCTGCAGGAGCCTCCTCAGAAAACTGAATGTTAATCATGTGATAGAAAATAAAggatattgtttgtttgatgcTGCA

Function

symbol description
map1lc3c Predicted to enable microtubule binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to human MAP1LC3C (microtubule associated protein 1 light chain 3 gamma).

NR:

description
Microtubule-associated proteins 1A/1B light chain 3C

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251529.1 True 726 mRNA 0.50 4 11597790 11599698

Neighbor

gene id symbol gene type direction distance location
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 50077 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 74132 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 97868 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 112308 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 163266 11424607 ~ 11434524 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 106410 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 182961 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 195837 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 270727 11870425 ~ 11883430 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 293650 11893348 ~ 11955071 (+)
G80825 NA non-coding upstream 26359 11571102 ~ 11571431 (+)
G80819 NA non-coding upstream 38743 11556962 ~ 11559047 (+)
G80814 NA non-coding upstream 42077 11549615 ~ 11555713 (+)
G80809 NA non-coding upstream 85896 11511474 ~ 11511894 (+)
G80808 NA non-coding upstream 88737 11508000 ~ 11509053 (+)
G80860 NA non-coding downstream 83226 11682924 ~ 11683244 (+)
G80861 NA non-coding downstream 83762 11683460 ~ 11683944 (+)
G80865 NA non-coding downstream 90742 11690440 ~ 11694453 (+)
G80847 NA non-coding downstream 136674 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding downstream 161659 11761357 ~ 11764940 (+)
eif4a3 eif4a3,LOC107702040 other upstream 62676 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 70748 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 90019 11505653 ~ 11507771 (+)
G80761 NA other upstream 371168 11222347 ~ 11226622 (+)
G80638 NA other upstream 935820 10641132 ~ 10661970 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 98626 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 152847 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 228180 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 260961 11860659 ~ 11868523 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 593056 12192754 ~ 12225492 (+)

Expression


Co-expression Network