LOC122353667 (cyp27b1,LOC107747831,LOC107561793,LOC107684010)


Basic Information

Item Value
gene id LOC122353667
gene name cyp27b1,LOC107747831,LOC107561793,LOC107684010
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 406021 ~ 412585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251540.1
cactggacatCATCCACGGCCACTGAATCAGGACACACTTCCTCCTAACCTGTCATCGTGAGCTCATGATTCGTGACAGTacacttcatcatcatcatcatcatcatcatcctcttcGGCTGCTCTTCTGAAGAGGTAGGCGGGGCGTCGGCGCTCTCCGCACGCCATTGGCTGAGCCCGGGAAAGGTGTGCGCGGAAGTCTCTCTATAAATAGAGCGGCGCCGCGCGAGCGCCCGGTGAAGGATGCCGCCGCAGGCTCTGAGGATGTCCGGCAGGAGCGCGCTTCCGCTGCTCAGGTGCGCCGACCGCTGGGCTGACGTCATCGCGTGCGCCGCGTCGCGTCAGGTGAAGACGCTGGAGCAGATGCCCGGACCCTCCGCCGCGGGCTTCGTCTGGGACCTGTTCTTCAGACGCGGGCTGTCGCGCCTCCATCAGCTGCAGctGGAGGGCAGGAGGAGGTACGGTCCCGTGTGGAAGGCCAGCTTCGGGCCCATCCTGACGGTCCACGTGGCCGAGCCGGAGCTGATCGAGCAGGTTCTGAGACAGGAGGGTCAGCATCCCATGCGCTCGGACCTGTCGTCCTGGAAGGACTACCGCACGCTCCGGGGAGAAGGATACGGGCTCCTGACGGCTGAAGGTGAGGAGTGGCAGGCCGTACGCAGTCTTCTGGCGAAACACATGCTGAGGCCTAAAGCCGTGGAGGCGTACGACAGCACCCTGAACGCCGTCGTGAGCGACCTCGTCCACAAACTCCAGCTCCGCTCGCAGCAGGGCTCCGGGCTCGTCACCGACGTGTCTGCCGAGTTCTACCGCTTCGGCCTGGAAGGGATCTCGTCGGTGCTGTTCGAGTCCAGGATCGGCTGTCTGGACCCCGTGGTTCCGCTGGAGACCGAGCGCTTCATCCGGTCCATCAACACCATGTTTGTGATGACGCTGCTCACCATGGCCATGCCTCACTGGCTCCACCGGCTCCTGCCCGGGCCCTGGGACACCTTCTGCCGCTGCTGGGACTACATGTTCCAGTTCGCTAAAAAACACATCGACCAGCGTCTCGAGGAGGAGAGGCAGAAGATGGCACGAGGAGAGTGTCTTGAGGGACGATACCTCACCTATTTCCTGTCTCAGGCCGGAGTTCCTCTGAAATCGGTCTACAGTAACGTGACGGAGCTGCTGCTCGCTGGCGTCGACACGatctCCAGCACGCTGTCCTGGTCTCTGTACGAGCTCTCCAGACACCCTGAGGTCCAGACGGCTCTGCGGGACGAGGTCCGGCGCGTGATGAAGGGCCGCAGCGTCCCCGGGGCCCGTGACGTGGCCGACATGCCGCTCATGAAGGCCGTGATGAAGGAGATCCTCAGGCTCTATCCTGTGATTCCCGCCAACGCTAGAGTCATCACAGACCGAGATATAACCGTCGGAGGATACCTGATCCCGAGAAACACTCTGATCACTCTGTGTCACTACGCCACGTCCCGTGACCCGCGTCAGTTCTGTGACCCGGACGAGTTCGTGCCGCGCCGCTGGCTGAGTCGGCCAGACGCTGGTCACCCGTTCGCCTCCCTGCCCTTCGGAGTGGGCAAGCGCAGCTGTGTCGGCCGGCGCATCGCTGAGCTGGAGGTCCACCTGGCcctggccCAgattttaatgcactttgaCGTGGAGCCGGCGGAGGAGAGCGAGCCGGTCCGGCCCATGACCAGGACTCTTCTGGTGCCTGAGAGACCGATCAACCTGCGCTTCATCGAGCGCTGAAGAGACGTCCGAGTGACTGGGTCAGAGACCGTCGCTGAGGGCCAGGAGGATGATGGGACGTCCTCTCCAGAATCCAGCTCAAGAACTCACCTGAGATCCATTAGATATCTGACCGAGACGAGCTGAAGAGGCCCAGAATCTGCTGCAACGTGAAGAACAGCTGaggagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccttcAGACTCCAGGGGCCTGTACCATGAAGCCAGTTTAGCTGGCTAGCCAAATAAGTTTCAGTTTAGTTCCCCAACTCGAGACCAAACCAGTTCCATGGTACCTGAAAGCCAGTGTTCGTCGCCGTAGTAACTTACACTCCACTCTAACCAGCGCCGGTTAAGTTCTGGTTTAGAGATCTCAAGCTGAAATTTGACCAATCAGCTTCAAGGAAAGTGACGCATCTCTGATGCAATAAAAGCCACTCCCCCAGCTTCTCTTACTCTGAATGAGAAAACTCTACACCGTAAACATTAAGATAAAATCATCTGATCTTTAGAGATGATCTCGATCCGTTACAAAAGCCAGCTTAGTTTAATAGTACttattaagcttttattttaaatgaatataaacatagataatatgcaatatatatacgTTTAGAATCAATCGCTGTGAACTAAATAtgagtttagatatttttggtttggttttgtaAACTCTGTAACCCTGAGTCTGTTCACTAGACTGACGAGAACCCAGAAAGAACCGAAGGACCAGAATCAAGATACAGCTGTGTCTGGAGAAGTACTCCACTATACTCTACAGGGCAGCATTAGGGATTACCtttgtgccaaaaatcattaggatattaagcaaagattttgttttgttttgtttttttatttattcctatcataaatatatcaagTTGATTTCTGATTAGTGATGAGCATTCCTAAGACCTTCAtctgaacaactttaaaggtgtttttctcaatattttttttcttatttttcagatagttgtatctcagaccAATCTCGTCTGATCCTaacaaacctttatttattcagctctcAGGTGATGTTTTAATCTAGATTTGactggttttatggtccagggtcaGTCTTTTCTTGAACATCTCTGATGAAGTGTGGGTT

Function

symbol description
cyp27b1 Enables calcidiol 1-monooxygenase activity. Acts upstream of or within hematopoietic stem cell proliferation. Is expressed in heart; kidney; liver; and spleen. Human ortholog(s) of this gene implicated in hepatitis B; obesity; rickets; type 1 diabetes mellitus; and vitamin D-dependent rickets type 1A. Orthologous to human CYP27B1 (cytochrome P450 family 27 subfamily B member 1).

NR:

description
PREDICTED: 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial

GO: NA

KEGG:

id description
K07438 CYP27B1; calcidiol 1-monooxygenase (25-hydroxyvitamin D3 1alpha-hydroxylase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251540.1 True 2906 mRNA 0.54 9 406021 412585

Neighbor

gene id symbol gene type direction distance location
si:ch1073-456m8.1 NA coding downstream 11835 386034 ~ 394186 (-)
avil avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443 coding downstream 20697 374160 ~ 385324 (-)
tegt tegt,LOC107574446,LOC107567938,LOC107684007,LOC107713865,LOC107711598,LOC107698838 coding downstream 33549 367846 ~ 372472 (-)
cdk4 cdk4,LOC107747701,LOC107701179,LOC107567936,LOC106583286 coding downstream 59603 339095 ~ 346418 (-)
LOC122353956 LOC107751587,LOC107552203,LOC107696908,LOC107714543 coding downstream 115671 289980 ~ 290350 (-)
mettl1 mettl1,mettl1-b coding upstream 1817 414402 ~ 425665 (-)
vgll4b vgll4,vgll4b,LOC107750033,LOC107697562,LOC107570332 coding upstream 499090 911675 ~ 933876 (-)
tamm41 tamm41 coding upstream 521267 933852 ~ 939272 (-)
LOC122353727 NA coding upstream 565012 977597 ~ 980116 (-)
LOC122353725 timp4,LOC107571219,LOC107667868,LOC107564284,LOC107687318,LOC107742036 coding upstream 572758 985343 ~ 990262 (-)
G78132 NA non-coding downstream 102803 160995 ~ 303218 (-)
G78150 NA non-coding downstream 133057 271740 ~ 272964 (-)
G78149 NA non-coding downstream 134664 270980 ~ 271357 (-)
G78140 NA non-coding downstream 168122 237488 ~ 237899 (-)
G78109 NA non-coding downstream 337752 67765 ~ 68269 (-)
G78162 NA non-coding upstream 18409 430994 ~ 431422 (-)
G78164 NA non-coding upstream 19102 431687 ~ 438660 (-)
G78167 dusp7,LOC107561798,LOC107677944,LOC107697567,LOC107712495 non-coding upstream 45708 458293 ~ 506641 (-)
G78192 NA non-coding upstream 180030 592615 ~ 594641 (-)
LOC122353904 NA non-coding upstream 306690 719275 ~ 721631 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 610 402940 ~ 405411 (-)
LOC122354324 arfgap1 other downstream 76982 322213 ~ 329039 (-)
LOC122353949 prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370 other downstream 117075 282263 ~ 288946 (-)
LOC122354323 LOC107706475,LOC107589231,LOC107700775,LOC107591713,LOC107703600,LOC107722831 other downstream 125444 274866 ~ 280577 (-)
LOC122353952 cdk4,LOC107747701,LOC107567936,LOC107701179,LOC106583286 other downstream 180190 217174 ~ 225831 (-)
G78144 alas1 other upstream 31300 443885 ~ 448901 (-)
G78170 NA other upstream 40549 453134 ~ 455998 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other upstream 186522 599107 ~ 794136 (-)
LOC122353728 NA other upstream 560369 972954 ~ 974787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 804634 1217219 ~ 1260090 (-)

Expression


Co-expression Network