gdf11 (gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248)


Basic Information

Item Value
gene id gdf11
gene name gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1828407 ~ 1850291 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251543.1
GTTGAAAAAGACATGccgaagtattttttttccggCAGTGAAGCAGGTAGCTGATAAAAGAACTTGAAAACAtaaactgaaatgcaaaaagGAACGTTCTTTAAAAGAATCCGATTACACCCGTCGCTTTGTCCGTTTAAAATGGAATATATATTCTGCTAAATCGTCCTAAATTCTTTTTAGATAGCCAATTCGTTGCTCGAATAACTACTCTCAAGATAAGAACCACGGTATCCTGCAAAGTCAAGAGGAAAAGCTTCGCCACTGACCATTTAGCATCATGACAAGGTATAACTTTTTGTTGTGCTTAACGGTTCTTATTTCTTTGGGACTGTCCGGGAGCGATGAGCCGGACCTCTTTCAGGCTCCACTGAGTGAGATGTCCTCGGATGCTGGAATCTCTCTCTTTGATCTGGAGGATGTGGACTCTCCAGAGTGTTCAGCGTGCGTTTGGAGAGAACAGAGTAAAGTCTTACGGCTGGAAACAATCAAATCACAAATCCTTAGCAAACTGCGCTTAAAACAAGCGCCCAACATCAGCAGAGAGGTTGTTAATCAGCTTCTTCCAAAAGCGCCTCCGCTGCAGCAGCTTCTGGACCATCACGACTTCCAGGGGGACGCATCCTCCCTAGAGGATTTCATGGACGCCGATGAGTATCACGCCACTACCGAGTCCGTCATCACCATGGCCTCAGAGCCTGAACCTCTGGTGCAGGTGGATGGGAAACCAAGCTGTTGTTTCTTCAAGTTCAGTCCAAAACTGATGTTTACCAAGGTCCTGAAAGCCCAGCTGTGGGTTTATCTGCGGCCACTACAGCAAACATCCACTGTTTACTTGCAGATCCTTCGCCTTAAACCTATCACTGAGCAGGGAAGCCGACACATACGCATCCGGTCGCTCAAAATCGAGCTCAGTTCGCAAGCTGGTCATTGGCAGAGCATTGATTTCAAGCATGTGTTGCAGAATTGGTTCAAGCAGCCACACACAAACTGGGGCATTGATATAAATGCCTATGACGAGAGTGGCAATGACCTGGCTGTGACGTCTCTGCAACCTGGAGAGGAAGGACTGCAGCCGTTCCTGGAGGTCAAGGTTCTTGAAACAACCAAGCGCTCGCGGAGAAATCTGGGTCTTGACTGTGATGAGCACTCTACAGAATCTCGCTGTTGTCGCTACCCACTCACAGTGGACTTCGAAGCTTTTGGCTGGGACTGGATCATTGCACCCAAACGTTACAAGGCAAACTACTGTTCGGGCCAGTGTGAGTACATGTTCATGCAGAAGTACCCACATACTCATCTGGTTCAGCACGCCAATCCTAGGGGCTCAGCAGGGCCATGCTGCACGCCCACGAAGATGTCGCCGATAAACATGCTGTACTTCAATGATAAACAGCAGATAATCCATGGCAAAATCCCAGGAATGGTGGTGGACCGTTGTGGCTGTTCATAGAATTATGTGTTTTGGTTGAAGGTGATGGAGGCAGGGTGTTAGGGGTAAAGTCTAGCACCTACAAGTCTCTGcagtttccttttattttccttaCATTCCTTGGAAAGAATACTACATAATGTACAGAGGACAAAAAGACAGTTGTTGTTTCTTTCATAACTCCAGTAGAACATTCTTAGGTCCAGGATCCTAATAAATCCTAATTTCTCACTTTATTATTTGAATCTGAATTTTAGTTCTACCAtctttttgtatgtgtgtgtgtgtgtgtgtg
>XM_043251544.1
GTTGAAAAAGACATGccgaagtattttttttccggCAGTGAAGCAGGTAGCTGATAAAAGAACTTGAAAACAtaaactgaaatgcaaaaagGAACGTTCTTTAAAAGAATCCGATTACACCCGTCGCTTTGTCCGTTTAAAATGGAATATATATTCTGCTAAATCGTCCTAAATTCTTTTTAGATAGCCAATTCGTTGCTCGAATAACTACTCTCAAGATAAGAACCACGGTATCCTGCAAAGTCAAGAGGAAAAGCTTCGCCACTGACCATTTAGCATCATGACAAGGTATAACTTTTTGTTGTGCTTAACGGTTCTTATTTCTTTGGGACTGTCCGGGAGCGATGAGCCGGACCTCTTTCAGGCTCCACTGAGTGAGATGTCCTCGGATGCTGGAATCTCTCTCTTTGATCTGGAGGATGTGGACTCTCCAGAGTGTTCAGCGTGCGTTTGGAGAGAACAGAGTAAAGTCTTACGGCTGGAAACAATCAAATCACAAATCCTTAGCAAACTGCGCTTAAAACAAGCGCCCAACATCAGCAGAGAGGTTGTTAATCAGCTTCTTCCAAAAGCGCCTCCGCTGCAGCAGCTTCTGGACCATCACGACTTCCAGGGGGACGCATCCTCCCTAGAGGATTTCATGGACGCCGATGAGTATCACGCCACTACCGAGTCCGTCATCACCATGGCCTCAGAGCCTGAACCTCTGGTGCAGGTGGATGGGAAACCAAGCTGTTGTTTCTTCAAGTTCAGTCCAAAACTGATGTTTACCAAGGTCCTGAAAGCCCAGCTGTGGGTTTATCTGCGGCCACTACAGCAAACATCCACTGTTTACTTGCAGATCCTTCGCCTTAAACCTATCACTGAGCAGGGAAGCCGACACATACGCATCCGGTCGCTCAAAATCGAGCTCAGTTCGCAAGCTGGTCATTGGCAGAGCATTGATTTCAAGCATGTGTTGCAGAATTGGTTCAAGCAGCCACACACAAACTGGGGCATTGATATAAATGCCTATGACGAGAGTGGCAATGACCTGGCTGTGACGTCTCTGCAACCTGGAGAGGAAGGACTGCCGTTCCTGGAGGTCAAGGTTCTTGAAACAACCAAGCGCTCGCGGAGAAATCTGGGTCTTGACTGTGATGAGCACTCTACAGAATCTCGCTGTTGTCGCTACCCACTCACAGTGGACTTCGAAGCTTTTGGCTGGGACTGGATCATTGCACCCAAACGTTACAAGGCAAACTACTGTTCGGGCCAGTGTGAGTACATGTTCATGCAGAAGTACCCACATACTCATCTGGTTCAGCACGCCAATCCTAGGGGCTCAGCAGGGCCATGCTGCACGCCCACGAAGATGTCGCCGATAAACATGCTGTACTTCAATGATAAACAGCAGATAATCCATGGCAAAATCCCAGGAATGGTGGTGGACCGTTGTGGCTGTTCATAGAATTATGTGTTTTGGTTGAAGGTGATGGAGGCAGGGTGTTAGGGGTAAAGTCTAGCACCTACAAGTCTCTGcagtttccttttattttccttaCATTCCTTGGAAAGAATACTACATAATGTACAGAGGACAAAAAGACAGTTGTTGTTTCTTTCATAACTCCAGTAGAACATTCTTAGGTCCAGGATCCTAATAAATCCTAATTTCTCACTTTATTATTTGAATCTGAATTTTAGTTCTACCAtctttttgtatgtgtgtgtgtgtgtgtgtg

Function

symbol description
gdf11 Predicted to enable cytokine activity. Acts upstream of or within anterior/posterior pattern specification. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; gonad; head; intermediate cell mass of mesoderm; and tail bud. Orthologous to human GDF11 (growth differentiation factor 11).

NR:

description
PREDICTED: growth/differentiation factor 11-like isoform X1

GO:

id name namespace
GO:0009952 anterior/posterior pattern specification biological_process
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22679 GDF11; growth differentiation factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251543.1 True 1727 mRNA 0.46 3 1828407 1850291
XM_043251544.1 False 1724 mRNA 0.46 3 1828407 1850291

Neighbor

gene id symbol gene type direction distance location
timeless timeless,LOC107689440 coding downstream 5659 1802745 ~ 1822748 (-)
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding downstream 30742 1789752 ~ 1797665 (-)
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding downstream 42060 1778309 ~ 1786347 (-)
LOC122353575 sarnp,LOC107696044 coding downstream 62333 1762575 ~ 1766074 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding downstream 98568 1725270 ~ 1729839 (-)
LOC122354691 NA coding upstream 12396 1862687 ~ 1862826 (-)
LOC122354701 NA coding upstream 14716 1865007 ~ 1865147 (-)
LOC122354693 NA coding upstream 16979 1867270 ~ 1867409 (-)
LOC122354692 NA coding upstream 19256 1869547 ~ 1869684 (-)
LOC122354709 NA coding upstream 21875 1872166 ~ 1872305 (-)
LOC122354127 NA non-coding downstream 87389 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 314504 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 316175 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 316881 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 379402 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 73414 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 633379 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 637193 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 846118 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 846937 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 112278 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 131620 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 568317 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 853620 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1034271 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 963061 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 969297 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 986992 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 987950 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 988556 2838847 ~ 2838919 (-)

Expression


Co-expression Network