LOC122353677 (LOC107747780)


Basic Information

Item Value
gene id LOC122353677
gene name LOC107747780
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13160142 ~ 13161913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251548.1
GTCGGCTCCGCACCTGATAGGTTTCCGCAGCCTCGGACTAATCGGTCAGAGACGCGGACGTCAGCCATGAGGAACCTTCTGACCACTCAAGACCAGAGCTTCTACCGCGAGCTGATCCTGAAGGAGGCCTACACGCGGCTGGCGTGGAAGACGAAATACGGTAAAGACTACCCGACCGCCTTCGCGTCCCGCAGGTCCGAGTCCATCGGGCCTCCGTCTGTCGGTAAAGTCACGCTGCCTCCGGTGCTCCAGCCGCGGGAGAAGAAGCCGGTGGCCCGCCGCTCGTTGAGTGAAGCCCCGCTCATGAGACCCGTGAGTCCGCGGACCGCAGCCGCTCTTTATCACGGCTTATCCAACGAAGGCAAAGGACGGGGTTTGTATTTGAAGAAACGGGCGCAGAAAGGTCCTGAAGAAAAGTTTGACTATCCGATTCTTTCGTCCTGGGATTATGGATGGAGATTAGGTGATTATGACATTGACTGTAAGACGCCAGCCTATGGGAGATCTGGGATCGTCCGGAGCACTTTCTATGCCAGGAATGGCATTTTTAACATTCCCACAGCCACCGATCAACTCGGATGAGACACCAGTGAAAGTTTTCCTCACCTCATTCTACCGAGTCTCAAGCAAATCTATgatgttaatgaaataaatcGTATGAGCATGCATGCAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107747780

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251548.1 True 673 mRNA 0.54 2 13160142 13161913

Neighbor

gene id symbol gene type direction distance location
LOC122353835 flnb,LOC107680511,LOC107657976,LOC107712990 coding upstream 1272 12824930 ~ 13158870 (+)
LOC122353891 slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 coding upstream 104266 13034637 ~ 13055876 (+)
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding upstream 204776 12927330 ~ 12955366 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding upstream 422502 12732754 ~ 12737640 (+)
pde12 pde12,LOC107682749,LOC107680466 coding upstream 440277 12715876 ~ 12719865 (+)
ctdspl3 ctdspl3,LOC107747402,LOC107680535,LOC107553546,LOC107597167 coding downstream 52395 13214308 ~ 13220680 (+)
ndufs7 ndufs7,LOC107597168,LOC107680537,LOC107747413,LOC107685366,LOC107553547 coding downstream 59926 13221839 ~ 13226883 (+)
dazap1 dazap1,LOC107680526,LOC107757952,LOC107747374,LOC107685225 coding downstream 71852 13233765 ~ 13252149 (+)
rps15 rps15,rig,LOC107685215,LOC107578086 coding downstream 91438 13253351 ~ 13255161 (+)
ushbp1 ushbp1,LOC107747291,LOC107680560,LOC107685353 coding downstream 154667 13316580 ~ 13329122 (+)
LOC122353896 NA non-coding upstream 141007 12977589 ~ 13019135 (+)
G81424 LOC107680494,LOC107574810 non-coding upstream 183987 12965771 ~ 12976155 (+)
G81420 NA non-coding upstream 235971 12865979 ~ 12924171 (+)
G81448 NA non-coding downstream 148408 13310321 ~ 13312912 (+)
G81454 NA non-coding downstream 152649 13314562 ~ 13315699 (+)
G81458 NA non-coding downstream 188021 13349934 ~ 13393135 (+)
G81468 LOC107747585,LOC107680549,LOC107597153,LOC107757943 non-coding downstream 244765 13406678 ~ 13651018 (+)
LOC122354466 NA non-coding downstream 248567 13410480 ~ 13413881 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other upstream 102922 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other upstream 280829 12875513 ~ 12879313 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 459258 12669789 ~ 12700884 (+)
G81268 NA other upstream 574501 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 624716 12531326 ~ 12535426 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 2848 13164761 ~ 13210690 (+)
G81434 NA other downstream 67030 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 212108 13374021 ~ 13383843 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other downstream 240374 13402287 ~ 13410126 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other downstream 298551 13460464 ~ 13465416 (+)

Expression


Co-expression Network