srsf6b (LOC100690823,LOC103156038,LOC101480010,LOC102289851)


Basic Information

Item Value
gene id srsf6b
gene name LOC100690823,LOC103156038,LOC101480010,LOC102289851
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1264285 ~ 1269596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251561.1
TGACGTCCCGGACGCGGCCGTTACGGTTATAACCGCTGGGTGGCCATCTCGCGGAGACCGACGGCGTTTAAAGCTGCCTGGGTTTGCGTAATTCATTATAGTTTACCGGACATCAACCATGCCGCGAGTGTACATCGGCAGGCTGAGCTATCACGTGCGAGAGAAGGACATACAGCGGTTTTTCAGCGGCTACGGGAAGCTTCTCGAGATCGATCTGAAGAACGGgtATGGGTTTGTGGAGTTTGAGGACACCCGTGACGCAGACGATGCCGTGTACGAGCTGAACGGTAAAGATCTGTGCGGGGAGCGTGTGATCGTGGAGCATGCCAGAGGGCCCCGGCGGGACCGAGACGGATATGGTGGGGGTTATGGGGGCGGCGGCGGAGGAGGCAGCAGCGGCGGCGGACGCAGCAGTAGTGGTTATAGCAGCAGGAGCCGAAGCGGGAGAGACAAATATGGACCTCCGGTTCGGACGGAGTACCGACTGATAGTGGAGAACCTGTCCAGTCGCTGCAGCTGGCAGGATCTCAAGGATTTCATGCGTCAAGCTGGAGAGGTGACCTACGCTGATGCCCACAAAGAACGGACCAATGAGGGTGTCATTGAATTTCGCTCTTACTCTGATATGAAGAGGGCTTTGGACAAGTTAGACGGCACTGATATCAACGGAAGAAAAATCCGCCTTGTGGAGGACAAGCCTAGACGACGTCGCTCCTACTCTGGGAGCAGGTCAAGGTCTCGCAGCCGACGTCGTTCTCGCAGCAGGAGCCGAAGGAGTTCACGAAGCCAATCTAGGTCCAGATCTCGCTCGAGGTCCCGCAGCAAGCACCGCTCCCGTTCCAGGTCTGGTCGCAAGTCCCGGTCCAGGTCCAGGAGAAAGTCTCACTCCAAGTCCCCGGCGAAGTCCCGCTCCAGGAAGTCCAAGTCTCGTTCCCGCTCGCGTACGCAGAAGTCACGCAGTCGCTCCACCAGCCACAAGTCCCGTTCTCGCTCCGACACCCGCAAATCTCGCTCCAAGAGTCGCTCCAAAGCCAAGTCGGAGAGGGATTCCAGGAGCCGCTCCAAGGAGAAGTCGGTCAGCAAGAAGTCCCGAAGCCGCTCTGCTTCTCCCAGGGAGAATGGAAATGGAGAACGGGCCAAATCCATGTCTCGTTCTCCGTCCCCAAAGGAGAACCGCCGTCAGTCAGAGTCCCCCGGCAAGCGCTCTGCGTCTCGCTCTCCTTCACGTTCGAAGTCTCGTTCCCGCTCTCGGTCTGCCTCTCAAGACTAGCGCTTCTCCGACCGGATTGCACCGCAGGAACATGTCATGCACAGTCCAGTGTTAATCGCTCATTCACAGCCTATGAACATTCACCAAATGATTAAAGAGGCTGCAGTCCAGTGTAGTATTGATTACTgtgctgttttcaacattgcatGAAAACAACTGCATACCAGAGACCcctctccatccatgaaatgtcaaatctgatttttttttttttcctcttagttTATAACGTTTCGTGCTTACAAGCATTGCTCAGGCTGTTGCATTCAACTCTGATGGTGCATCATTTAAAaggctttttgtgtttttgctttagtGTGAGGTTCAAGGAGGCTTTAACAATATGTAATAGCCTAAATTTGATGGAATCCATAACTACTTTTGCAGCTGTTCTTCTGTGTAGTTGACAAGATGTGATGAGTGGATGGCTGTGGAAATGCTTCCTCACTGTGTAGTCATTCATATCTCTTGTTAATAATTTTGGTTCTGTTAGTGCTCTGGATCatcaatttctttttcttttttttacaaaaaagtttaatacaCGACTTGCAGTGTGATTTCTgtgattggtctcatttttaaatgggtttttgaatattttccagtgttttagttaaataaacattaaattgtt

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 6 isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12893 SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251561.1 True 1907 mRNA 0.51 6 1264285 1269596

Neighbor

gene id symbol gene type direction distance location
acot8 acot8,LOC107670930,LOC107730625,LOC107722006 coding upstream 58 1260783 ~ 1264227 (+)
ppp1r3db LOC107730614,LOC107551316,LOC107654797,LOC107722003 coding upstream 50740 1211847 ~ 1213545 (+)
znf831 LOC107558955,LOC107730612,LOC107670927 coding upstream 84486 1168152 ~ 1179799 (+)
nuf2 nuf2,LOC107570127,LOC107550318 coding upstream 158579 1098493 ~ 1105706 (+)
zgc:77375 zgc:77375,LOC107700631,LOC107758152,LOC108431553,LOC105013113 coding upstream 171212 1083971 ~ 1093073 (+)
ift52 ift52,LOC107730620 coding downstream 487 1270083 ~ 1276013 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding downstream 8184 1277780 ~ 1284953 (+)
dtx3l2.2 LOC107654785 coding downstream 15514 1285110 ~ 1290204 (+)
LOC122354215 LOC107654785 coding downstream 21511 1291107 ~ 1300799 (+)
lrp1aa LOC107654787,LOC106565466 coding downstream 39077 1308673 ~ 1414799 (+)
G78380 NA non-coding upstream 41450 1217224 ~ 1222835 (+)
G78370 NA non-coding upstream 68822 1195224 ~ 1195463 (+)
LOC122353680 NA non-coding upstream 189705 1071074 ~ 1074580 (+)
G78089 NA non-coding upstream 839207 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 855881 405735 ~ 408404 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 6919 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 153137 1422733 ~ 1425764 (+)
G78467 NA non-coding downstream 200072 1469668 ~ 1471384 (+)
G78468 NA non-coding downstream 209578 1479174 ~ 1482149 (+)
G78479 NA non-coding downstream 244283 1513879 ~ 1514178 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 72564 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 186886 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 224046 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 350486 848175 ~ 913799 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 554795 603138 ~ 709490 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 149924 1419520 ~ 1448960 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 216111 1485707 ~ 1517963 (+)
G78500 NA other downstream 321148 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 375035 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 408630 1678226 ~ 1681200 (+)

Expression


Co-expression Network