pmela (pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442)


Basic Information

Item Value
gene id pmela
gene name pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1789752 ~ 1797665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251571.1
GACACTTCTTGGGTCTCTAGAGTAAAGCTGGGTCAGTAACTGGTGTCGTAGCTATCAATGCATACCCTGATGATGTGGAAGGCTCTCATCTTAATTCTTACCTTCTCTTCAGGAGCACTTTCACAATCAAGAACGCGCTTTGCACGTTATCGCTCATGGAACTCACACATGTATCCAGTTTGGAGGGATGGAGATCCCAGATACAGGGACTGCTGGAAAGGTGGAGAGGTGACATTTGAAGTCAGGAGTGATGGTCCTACGCTAACAGGAGCCAAGGCTACTTTCAACATTGATGTTCGCTTCCCTCAGAACCAGACAGTGCTTCCTGATGGACAGGTGGTGTGGGCAAGAAACTGTACAGTTAATGgaaCATCCTATACTATGGGCCAGACTGTATACCCAGAGTCCAGCATCCCTCGAGAATGGAGTGGTGTCTTTCCTGACAGGACACCCTTCACTAAGATCTCTAACAAAAAGCCCCGCTTCATCTATGTGTGGAAAACATGGGGAAAATACTGGCAGGTGGCTGATGGTCCCTCCTCTCTACTGACTATTGAAACAGACAATGTGCCTCTTGGTTCTTACACAATGGACATAGTAATTTATCACTGCCGTGGCAAAGACAAGTTTGTTCCCCTTGGTTATGCATCTACCCAGTTCTCTATCACCGaCCAAATTCCTTTTACAGTGACATTATCTCAGGTTGGTGACATCAATCAGGGTGACCAAAGCTTTATCCAGAATAGAGCTGTGTCCTTTGGCATTAATTTGCATGACCCTAGCTACTATCTAAGTGGGTCAGACATTACCTTCAACTGGGATTTTGGGGACAATAGTGGAACTCTCATTTCCAGGGAGGCTACTGTTACCCACACGTACCTTACAACTGGCTCCTTCAGGCCACAGGTGGTTTTGATGGCAGCCATCTCAAGTGGTTGTCAGCTCAGTCCAACTGCAGCATCCAGCGGTGCACCTCCTGTTCCTGTCACAGATGAAGCTGCAGCAGTGGAAAACATTGCGCTGACTGTTTCTCCTCCCATTGCGGAGGAAGGAGTTGCAGCTGATGTCACTGTCGCTGCCAACGACTTGGCGGTGTCCGCAATTGACAATGAAGCAGAATTAGTTAATGCTGCCCAAGAGGTCCCCACTGTTGCTGGAGACGCATCTGTGGCTGAGGCTGACAATACTGCCGCAGTGATGTTAGTTACACCTACAGCTGTTGAGGCTGAACCTGCGACAGTAGTTCCTGTGGCTGACACGTCCCCAGAAGAAGACGAGGTTATTATCGATCTGGCAGCCACAGTACTCCCAGCCCCTGCTGCTGTGGCTGACACGGCCTCTGTTCAGACAGTTATAGAAACAGAAGCACCAGCTGGTGATGCAGTCATCATTATCACCCCCGAGGCAGTGGTCACAGATATTGTAGCATCTGTCATACCTGCAGTTGAAGACACAGCTAACGAGACTGTTGCCGAAGTTAACGAGACTGTTGCCGAAGTCAACGAGACTGTTGCCGAAGTCAACGAGGCGACCGAAGCCGTCACTGGCATAACTAGCATACCCGAGGCAACAGTAAGTGAATTAGAAGCTGAACTGGTGGCAGGAACTGAAGCGACCCAGGCTGCTCTAGTCATTGCAAAGCGGCAAGCACCAGAAATGCCAGCAGAAACAAACTGTATGATTTATCGTTATGGTTCCTTCTCTACAACTCTTGCAGTTGTccAGGGAATAGAGAGTGTTGAGATCGTGGAGGTGAATAATGTGGTCGTTCTGGCCACAGAGCTGGAGCAGAATGCTGTAGATCTTACAGTAACATGCCAGGGAAGCCTGCCGAATGAAGTCTGCACTGTGGTGTCTGATGCAGACTGCACAAGTCCTGTTCAGGACCTCCAGTGCAATGCTGTGACTCCTGCCTCCGAGTGTCAGATGGTGCTGCGACAATTTTTCAACAACTCCGGCACCTTCTGCATCAACGTCTCTCTAACCAATGATGTCAGCTTGGCTGTAACCAGCGCAAAGCTCAGTGTGGCGATAGACACAAATTCATCGAGGAACACGGCTGGAGCAACACTGGGAGTCCTGGTTTTTATTTGCGCTCTGGGGGCCGTTGCATTTACATACAAGCGATTTAAGGAGTACCAGCCACTGAGGGATGATACAAGTGGCAGTTTCAGCTCTGGAAGAAGCTCAATGCCTTTAACGCTGTGGAACCTTCTGAGCCGGAGATCCGCTGCAGAAAGCCGTCCCCTCCTGCTTGGGCGAGTGGTGTGAAAAGCTGTCCACTTCTGCTTTAAGACATATTGCATAGAGAATAAATATGAACAACGAGGGCTTCATTGTACTGTATTAACAAAATGTCATATGTAATATGCCTCACAATATCTAAATGGTGTTTTATTGTATGTGGCAGTGTATTGTGTGTCGTTATGAAAAGTTGCAGATAGCTTTTCTTGGGTTGCAATGATCAGACTTTTTCCCCTTCGTTTGTTGTTTATGTCTAGGTTGTAactttaacaatgaaaaatatagtGTAGTGGACAGGACAATGCTAAGTAGTTTACTTACGTTATTTACAGAAGGTGGGGataaaaagtgcaaatgagGTTCGAAatgtataacaaaatatttacagggttttttttttacaaatgttaggAATTCACCCAGAGCATAGACATTAATCTATGCTCTTTAACAAAACCAAAGTACAGTGTTTGGCACTCATCCCTTACCCAACAGTTATGTGGATCTCTTTAGttatgtaaatgcaataattcTATAAAGGAACCCTGCTTGATAGGAATATTGTCATCATCAAATGGCAAATGTTTCAAGAAAAGCCTTGTGCCTGTTCAACATTTATGCAACATTAAGAAgctttatgaaataaatgtatatgtacattGAACTACgatgtaaatttacatttatgtttaatcgtcattaattaaaaatatgatgtaTTTT

Function

symbol description
pmela Predicted to enable ATP binding activity and metal ion binding activity. Acts upstream of or within several processes, including amyloid fibril formation; melanocyte differentiation; and melanosome organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Predicted to be integral component of plasma membrane. Is expressed in several structures, including eye; immature eye; neural crest; notochord; and pigment cell. Orthologous to human PMEL (premelanosome protein).

NR:

description
PREDICTED: melanocyte protein PMEL-like isoform X2

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251571.1 True 2967 mRNA 0.46 13 1789752 1797665

Neighbor

gene id symbol gene type direction distance location
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding downstream 3405 1778309 ~ 1786347 (-)
LOC122353575 sarnp,LOC107696044 coding downstream 23678 1762575 ~ 1766074 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding downstream 59913 1725270 ~ 1729839 (-)
cnpy2 cnpy2,LOC107572063,LOC107557548 coding downstream 89294 1697584 ~ 1700458 (-)
dgkab si:ch73-267c23.10,LOC107737366,LOC107696033,LOC107557543,LOC107730898,LOC107683646,LOC107557545 coding downstream 111557 1664162 ~ 1678195 (-)
timeless timeless,LOC107689440 coding upstream 5080 1802745 ~ 1822748 (-)
gdf11 gdf11,LOC107573429,LOC107681455,LOC107683628,LOC107709533,LOC107562248 coding upstream 30742 1828407 ~ 1850291 (-)
LOC122354691 NA coding upstream 65022 1862687 ~ 1862826 (-)
LOC122354701 NA coding upstream 67342 1865007 ~ 1865147 (-)
LOC122354693 NA coding upstream 69605 1867270 ~ 1867409 (-)
LOC122354127 NA non-coding downstream 48734 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 275849 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 277520 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 278226 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 340747 1444615 ~ 1449005 (-)
G78726 NA non-coding upstream 126040 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 686005 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 689819 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 898744 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 899563 2697228 ~ 2697472 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 73623 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 92965 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 529662 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 814965 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 995616 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1015687 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1021923 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1039618 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1040576 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 1041182 2838847 ~ 2838919 (-)

Expression


Co-expression Network