LOC122353704 (LOC107568056,LOC107730479,LOC107657995)


Basic Information

Item Value
gene id LOC122353704
gene name LOC107568056,LOC107730479,LOC107657995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3725260 ~ 3730775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251579.1
GGGAGAAACTGAGAGAGAGTAGGAGGAATGAAAATAAGAGTTTATATGCAAGTCAGCATCACAACTGGATGCAGAGCATTTCAGCAGTACAGACCTTTAAGTTATGTAAAGCAAGGGGTGTCTGAAGaaaGCACCCAATAGCACCCCTCGGTGTGAAGCCACAAGTCTCCTTTCAGTcctaaatcattttatttgtcacaacAACTCAAACAACCATTAGCACCTTACTCAGCTGAACTTTAATCATCCAGCAAGTGCTTATGCCCTCAAAACACTCAACTCAAATGGTCTTATTCTTCCCCATAATCAAATTTCCGCTATAAACAATGCAATGTTACTGACATTTCTCTGCAACTACTAAACAAGTCCAACTAGAGAGAGGACGAGGACAGCACATCATTTATGTCAAATGTGATACTGCATGATCTTTGTTGTGCTCATGGAAAAAAATACGAGTTCCTCCTCAGTCTTAGAAAAATGGGATTCCATACCAAATGAACAGCCATCCGAGCCCATTTTTAAAACCCCTTCACCCTTTTGGAATCAGGATTTAATATACAGAAGATCTAGACAAGTACGTGATTCCACATGTGATGTCGTCACAGATGGGTTCAACTTGTATACCTACAGGTGTGATTTAGGCACTGTCACAAGCCCAGACCTCTCATGTGTCATAGGACCAAATCAGATCCACCCTTCACCGAGTCTGAACTCGACTAGCAGTAGATATCTACCACCTACATCGAAATTACTTGTGAGCAACCCAAATACGCTGCACGGTATTGGAAGGAGCACTTCATACTGGAGTTATTTAACTCCAGAAGTCGGAGATGGACTTGTGAAAGGTTTCAGAAAGCTGCATAATCCACAAATCGACCCACTGTCGGCTTCATATTTTTACAGAGGAGTCGTTAGGGATACTCTACGAAGAGATATTCCAAATGAGGAAGtcaaaatatgcatgcaaaaagaGAGGCCGAGATATTCACATTGGTACCATGAACCGCAAAGTCAGAGAACCTGCTCTAAGACATTACGTGAGAGACATTATGTGAGAAACAACCCACTGCTAGGTTCTTTATTGCATACAGATTCTAGTAAAGAATATTTTCGACACAATATTGAGTACAACCATCACCAGCCTCTCAATCTGAATGACTCGATTAGGCATGCTGTGCCTGAAGAATCAAAGCCGGAAGGTGAAACGCAAACAAGAGAGGAGCTCCCCCTGCTGGTCTGGAGAGAAGAAGCAGAAAAACACAATCGCCAAACAAACACTAGCTCGCAATCTAAATCCTCTTCTTCTGCCCTCTGGGTTCTCAGTCGCTTTGCAGAAGGCACATTGGTGGAGCTTGAGGGAGGCCGGCTGAAGCGGGTGGAGGATTTAAAGATGGAGGATTTGGAGCAGTGTGCCCAGTTACATCCTGAGCTGACGTTGAAGCGCTTCACTGTGTTGAAGGTGACTCCTTCACAGACCCCAGCGTTGTCATGTTTGCTTGTGGAGATTGAGCATGACCACTCACAGTTGTCCATGGAGGTGAGTGAAGGGCTTCCCTTCTTCGTTTGCAGTCATGGCTGGTCCTCCTGTAACCCTCAACATACAAGTAAAACCTGCAGACTACAATGCCGCCAGCTAAAGGTGGGTGACGTGTGCCTGGCATTGACGCATATACCCGTCTCTTCATCTCAGCCTGCCAATCAGAACCTAGCTGAAGTGAGTGAAGATCACAGGGTTCCAAAGTGTCACGCCGAAAACAACCCCACAGTGCAGAAAAAACACCAATCAAGAAAGAGACACTTCACAGCTCCTGAACTCAGGGGGACATCTAAGATACGCAACTTCGAAGACTGAGCAGCTAAAGGCTAATTCATgtattgtagatttttttttttttttttttttgaagtttcatttgctatttttattgaaCATAATTTGTCTTTATACATTGTAAATACCATTCCTTTGCAAATATAAGTGTGTACATAACTGCAGTGTTACCGATTCAattacactaccgttcaaaggtttagggtcagtgagtttatataagtattttttttttttaaagacaatattttatttattaaataggtCAAATGTggcagtacatttatttttacattgct

Function

NR:

description
PREDICTED: uncharacterized protein LOC107568056

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251579.1 True 2130 mRNA 0.42 3 3725260 3730775

Neighbor

gene id symbol gene type direction distance location
cpne5b cpne5b,LOC107680428,LOC107555996,LOC107751002,LOC107699334,LOC107101079,LOC105027122,LOC107385564 coding upstream 67971 3543698 ~ 3657289 (+)
kif21b kif21b,LOC107592560,LOC107680414 coding upstream 193087 3467547 ~ 3532173 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding upstream 273119 3415053 ~ 3452141 (+)
mapk14b mapk14b,LOC107680431,LOC107714506,LOC107699338,LOC103028137,LOC104939458,LOC108436315 coding upstream 310341 3392783 ~ 3414919 (+)
b3galt6 b3galt6,LOC107555998,LOC107714504,LOC107699339,LOC107592565,LOC107680432,LOC107751019 coding upstream 343922 3378085 ~ 3381338 (+)
tmem38a tmem38a,LOC107702305,LOC107730482,LOC107658508,LOC107751025 coding downstream 22181 3752956 ~ 3759693 (+)
thop1 thop1,LOC107568058,LOC107658499,LOC107592556,LOC107730481 coding downstream 30771 3761546 ~ 3769572 (+)
reep6 reep6,LOC107698004,LOC107745351,LOC107556177,LOC107658751,LOC107710439 coding downstream 61130 3791905 ~ 3795946 (+)
LOC122354262 si:ch73-238c9.1,LOC107710444,LOC107658759,LOC107592584,LOC107745343 coding downstream 121837 3852612 ~ 3854297 (+)
trnaq-cug_18 NA coding downstream 176741 3907516 ~ 3907588 (+)
G79021 NA non-coding upstream 23227 3701745 ~ 3702033 (+)
G79002 NA non-coding upstream 184191 3539988 ~ 3541069 (+)
G78898 NA non-coding upstream 333470 3391564 ~ 3391790 (+)
G78886 NA non-coding upstream 433860 3288201 ~ 3291400 (+)
G78815 NA non-coding upstream 608830 3115425 ~ 3116430 (+)
LOC122353534 NA non-coding downstream 15318 3746093 ~ 3747491 (+)
LOC122354703 NA non-coding downstream 15875 3746650 ~ 3746742 (+)
LOC122354704 NA non-coding downstream 16152 3746927 ~ 3747012 (+)
G79039 NA non-coding downstream 17812 3748587 ~ 3749486 (+)
G79037 LOC107745340,LOC107698002,LOC107556194,LOC107710448,LOC107592552,LOC107658524 non-coding downstream 69698 3800473 ~ 3858370 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other upstream 334031 3386258 ~ 3391229 (+)
LOC122353713 LOC107714487,LOC107555999 other upstream 363602 3358210 ~ 3361658 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 452641 3270199 ~ 3272619 (+)
G78790 NA other upstream 898466 2825539 ~ 2826794 (+)
G78763 NA other upstream 1045118 2678135 ~ 2680142 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 40780 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 53189 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 65631 3796406 ~ 3929528 (+)
adgrl2a adgrl2a,adgrl2 other downstream 330154 4060929 ~ 4152591 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other downstream 637650 4368425 ~ 4375388 (+)

Expression


Co-expression Network