sgta (LOC107656077,LOC107753803,LOC107674559,LOC107723856)


Basic Information

Item Value
gene id sgta
gene name LOC107656077,LOC107753803,LOC107674559,LOC107723856
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15132325 ~ 15138312 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251590.1
GGGAACCCGGCGTGTGACGTCATGCGCGTTACGACAGCCGTGAGCgagcacgcacgcacgcacgcacgcacaggAATCATCACACTCTAGTGGCTAGAGATCTTTAAGGGGAGACAACTGGTTTCCTTTACGTATTTATTTGGTGAGGTTTAAGCCTCAAGACAGAATGGCAGACACAAAGCGTCTCGCATTCTCCATCATCCAGTTTCTCCATGATCAGCTGTCCTCTGGGAGTCTGTCATCAGATGCTCAAGAAAGCTTAGAAGTTGCCATCCAGTGCCTGGAGACAGCGTTTGGCGTCTCGGTAGAGGACCAGAGTTTAGCAGTCAGTCAACCTCTGCCAGAGATATTTGCCTCTGCAACCAAACAGACACCTCAAGCTAAGACCAATTCATCCAGTGGTTCACCTTCGGAGGAGCAGTTAGCAGAGGCAGAGTGTCTTAAAACAGATGGTAATGATCAGATGAAGGTAGAGAACTTTAGTGCAGCTGTTGAGTTCTACTCAAAAGCAATCCAGCTTAATCCTCAAAATGCTGTCTACTTTTGCAACAgAGCTGCAGCCTACAGCAAATTGGGGAACTATGCTGGAGCTGTGCAAGACTGTGAAAGAGCCATTGGAATCGATCCAAACTACAGTAAAGCATATGGACGGATgggGCTTGCTCTTGCAAGTTTGAACAAATACTCAGAGGCTGTGAGCTACTACAAGAAAGCGTTGGAGTTGGACCCCGACAACGACACTTACAAAGCCAACCTGCAAATAGCAGAACAGAAGATGAAGGAGGGACAGCCCAGCCCAGCAGGGGGTTTGGGTGGAGTCGACCTGGCCGGTTTGCTGAGTAACCCTGGTTTCATGAACATGGCGTCTAATTTAATGAACAACCCTCAAGTGCAGCAACTGATGTCAGGTATGATGTCTGGGGCTTACGGCCCTATGGGGGCAGCCACCTCGCCAGGAGCAACAGCTGGAGCAACAGCTGGAGCAGCGGCTGGAGGTGGAGCAGGAGCTGCAGCTGCAGGTGTAGGTGCAGGTGTAGGTGTAGGAGGTGCAGGTGGTGGTGCCAATGATCTCTCCGGCCTCATACAGGCCGGTCAGCAGTTTGCACAGCAAATGCAGCAGCAGAACCCTGAGCTAATTGAGCAGCTGAGGAGTCAAATGCGCAGTCGACCTCCAAGTAGTGCTGGCAACGACGAACACTGACACCGCCCTATGTTTCATTCTCAACCTGGTGGACCTTTGGAAGATGggctacttttttattttttaagatataCCTTGTTCCTCCAACTCTAGGGACGAGACTGAATTTATTCATCTATAAAAACCGCATGAGTTCCCACTGCCCCACATCGCCTTGCCGGTTGGAAGAGGTCATCAGTGCACACGTACACATCATAATTGGGCACTGGACTTCAGCAAATGTTTGATCTAATGAAATATCACACTGGGTTAACACTATATTCCCCGAGTAATAATCCATGTTACTGGACTGTGACTATTAATGAAGCGCTGCTACATGGATATAATGCAGATTTGCTGTAACACCTCAGCGATTCACTTGTCCAATGATAAGTCTCTGCCTGAACTGAAAGGGGTTGACAAGGAACATGTGCAAACTCAACATTGACAATTAAATGTCAGATTTCGAATAGGAATTGTGTTTTTGCAGCTGAGGTTTCATGTTTCACAACCACTTATTGCTTGCAACCAGTGCGATATGTCAGAAGGTACCATTACTTAACAAGTGTGGTTCTTAATTTGTTCTGAACTTTTGGATTAAAGGAAATGgatgtttttgtccattttggAGAACCGA

Function

NR:

description
PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha-like

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251590.1 True 1817 mRNA 0.48 12 15132325 15138312

Neighbor

gene id symbol gene type direction distance location
LOC122353710 slc39a3 coding downstream 733 15126642 ~ 15131592 (-)
slc1a8a slc1a8a,LOC107753804,LOC107674556,LOC108437258,LOC105896421,LOC108271187 coding downstream 5821 15115772 ~ 15126504 (-)
tmem259 LOC107753818,LOC107656092,LOC107593127,LOC107723848,LOC107602804 coding downstream 334230 14789168 ~ 14798095 (-)
sid1 NA coding downstream 477805 14653436 ~ 14654520 (-)
si:ch211-1a19.2 NA coding downstream 479203 14651265 ~ 14653122 (-)
LOC122354454 LOC107753801,LOC107655989,LOC107602816,LOC107674553,LOC107723865,LOC107593156,LOC107563700 coding upstream 34429 15172741 ~ 15175386 (-)
LOC122353766 NA coding upstream 59490 15197802 ~ 15200640 (-)
LOC122353767 NA coding upstream 66627 15204939 ~ 15205734 (-)
LOC122353768 NA coding upstream 71126 15209438 ~ 15214245 (-)
LOC122353770 NA coding upstream 104176 15242488 ~ 15245700 (-)
G82037 LOC107723845,LOC107602813,LOC107674545 non-coding downstream 19587 15111001 ~ 15112738 (-)
G82044 LOC107674560 non-coding downstream 25441 15105914 ~ 15106884 (-)
G82009 NA non-coding downstream 72789 15059204 ~ 15059536 (-)
LOC122354533 NA non-coding downstream 224830 14894364 ~ 14907495 (-)
G81996 NA non-coding downstream 240857 14889528 ~ 14891468 (-)
G82053 NA non-coding upstream 27093 15165405 ~ 15165605 (-)
LOC122354566 NA non-coding upstream 70008 15208320 ~ 15208834 (-)
G82173 NA non-coding upstream 151336 15289648 ~ 15291976 (-)
G82176 NA non-coding upstream 159604 15297916 ~ 15298875 (-)
G82178 sp2,LOC107753850,LOC107680542,LOC107718867,LOC107674551 non-coding upstream 162114 15300426 ~ 15301171 (-)
G81866 NA other downstream 595933 14534718 ~ 14536392 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other downstream 680585 14442601 ~ 14451740 (-)
G81829 NA other downstream 827201 13885683 ~ 14305124 (-)
G81799 NA other downstream 840816 13850335 ~ 14291509 (-)
G81650 NA other downstream 1432367 13698099 ~ 13699958 (-)
G82067 NA other upstream 66649 15204961 ~ 15214058 (-)
LOC122354561 NA other upstream 95621 15233933 ~ 15235436 (-)
LOC122354564 NA other upstream 262606 15400918 ~ 15401691 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other upstream 414044 15552356 ~ 15577065 (-)
LOC122354045 NA other upstream 457253 15595565 ~ 15614937 (-)

Expression


Co-expression Network