cdh27 (LOC107654208,LOC107730486,LOC107568064)


Basic Information

Item Value
gene id cdh27
gene name LOC107654208,LOC107730486,LOC107568064
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3691160 ~ 3702206 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251592.1
attcatttttattgcaagGTCACTGCAGCCACCCGGATCCAGTCTGTATCCAGaccagatggtggatcagcacttAGAGACGACCTCGACAGCCCTGAATGTCAGCAGAGACCAGGATATGAGCCCCAGAGACAGATCGCCAGTAAATACCTTTATCTAAACGGCCATCAGTAGTTAGCTGCAGCCTGAAATTAACCTGCTGATTTTGTATGGCCAGAGGACAACTATGGAGTTTTGATTCTCTCGACAAACCAGTAAAATAAGGGTGGTCACCATAAGGCACTTGCTAGTAACGCAGTTGTTGCAATGATTGTCATCTGGTTGGGCTTGAATGACTAATTTTGCAGTTCTTAGACTATaatttaggtttaggtgtaatTTGAATCCATGCTGATGGCTAACAATGCATAATGTACaacaaaaatctcaaaaaaggACATTTGCAGTCATTTACTGTTCTTAACctattgccattttttttttttgtggtttaattCTCCTTTtatctctcttgctctctcccCCTATAGAAACATGTATAATGTCTCTCTCTATAATGTCCGCATGTGTACACTGCATACTGGTGCTGCATAACTAACACAGCCCCAGGGTGTAGTTACCTGTACGTCTGCGCTACACAGGTGGGATTGCGCTCAGTTGTAGTTAGAAGCAGGTCTGAGCGTGAGAGTTCAGGGGATTCCAGTGTTAAAGCTTTCCGCCTCGTATTAGGAACTGAAATTACTACGGCTACAATGTTCAGCTACTTGGTGCTTGTGGGAATGATCTGTCTGTGCAGCGCAGAGTCTCTCAGACGTCATAAACGATCCTGGATTATAGACTCTTTTGACATTGTGGAAGAACACCCGGGCCCTTTTCCTTACGAACTCGGGCAGATTAAACTGGACCGCAGCTATTTAGTGGAGTTCAAGTTAAAAGGCAAAGGTGTGGATGAAGACCCAAAAGGTGTCCTGTCTATTGATCCGCTCACAGGAGTCATTAAAGTCCACCGGAAAGTCGACTATGAGCAGCACAGCATTCTGAAGCTGACCTTCCAAGCAAGAAACAAGTCCAACTCAGCCATAGATACGCAACTAGGCATGGAGGTCAACATACTGGACATCAATGACAACCCTCCGGTTTTCCAGAGAAAAGTTTATGATGTTACTGTAAACGAAGCAGCAAAACAAGGTGCTTTTATTGTAGGTGTCCTAGCAATTGATAAGGACGCACCAGGAACTCCAAATTCCACCATCGATTACAAAATCATTTCTGTCACTCCAGCAACTAAAAATGTGGAATTCTACATCCAAGAAAGTGGTGCGATATCTTTCAAAGGATGCTTTGAttatgagGCGGCTGATAAATACACTATAACAGTTGAAGCTAAGGACCGTGGAGTTGTGAAGCTGTCAAGCACGGCAACCATAGTTGTCAACCTTCAGGACGGAAACAACCATTTACCAGTTATCACAGGGCAAACGGGTTCAGCTAATGTGATGGAAGGGACAAAAGGTACTTTACCTGTCAAAATACACACAGCCGATACTGACACACGTCTCACTGCTGCATGGAGGGTCACATACTCCATACAAGGGGATAAAGATGGCCACTTTGCCATCAACACTGATCCAGACACCAATGATGGAATCCTCACAGTGGTCAAGcCTTTAGACTATGAAGCCAACACAGAACAGAAAATCACCATCTTTGTAGAGAACGAAGAGCCTTATTTCTCTTGTGAGGTTAAAGAGAGATCTGCAGTTGGGCTCTGGACAATCATCACAAATCCACCAAAACCATCCTCTAGGAATATAACCATAACTGTGGAAGATGCCAATGACCCTCCATTCTTCCCAAATCCTGTAAGAAAAGTAATTTTGGAAGAAAATGGTGCTGTCGGAACTTTTGTAGACAAAGTGACAGCGGTCGATCCTGACACCGGACGTCCCCACAAACTAGAGTATTCTATTGAGCAGGATCCTGCAGGCTGGTTCAGAGTAGACAAAACAACTGGGGAAATCTTTGTGAAAGAGTCTTTAGACAGAGAATCAAGCCATGTGACCAATGGGACGTATACGGTCACTGTCCTTGTGACGGAGAAGGATGACACTCCTCCAATGACAAGCACTGCTACCATCCAGATCCACGTCGAAGACAAAAATGATAATGTCCCTGTTTTAAAGGAGAACATGGTTTCTGTTTGCCAGTCTGATGAAGTATCACGTACAGAGATCACAGCCTATGACCTCGATGGGGATCCGTACAGCGGGCCGTTCAGTTTTGAAATTATAGGAGATCATAAGGAAGAATGGAGCTTTGACCCCAGTCATGGTGACACAGTGCATTTGGTGAAGGATAAAAGCGTTCATGCCAGTCTGTACACATTGATTGTGAAAATCTCCGATAAACAGGGCAGGTTTGTCCTCCAGAACCTCTCCGTTGCTGCGTGTGACTGTGTGGTTTCACCAAGCTGTCTGATGGAGCgcaacacacagaaaaaagtgGGAAGTGGCATCATAGGAATTACCATTCTTGCCGCGCTGATGATTTTTGCATgtctgctgctgtctctcacTTGCTCTTGCGGACCTGCGAAGTCTCTGGTGCAGGTAGACAATGTCTTAGAAGATGCCCTTTTGCCTTCTAACATCGAGAAACCTGGCACTGACTGCGTGgTCCCAACTGTTCTACTGAAGAAGGCATCTGTTAGTCACTCAAAGGATGAAACTTTTATTCATAATGGGCTTCAACAGTCAATTGACATTAAGGCGGTATCCAGCAAAACTATAGCCACTCATAGTGTCCCAGTTCAAATGGATGAGTACTGGTCTAGAGACAGATCACAGTGTTATTCAAATGAGGCATGGACGTGGAAACAGTATCAGAGCGACAACCGCTATCAGGGTTCAACATTTAGCCGGAGGAGCTCCCAAAGAAGACAGGGTAACCATTTCATCAGCCACTCGACTCTACAAAGTTTGCTCTCTCAGAGACTGCATTCGGTACAGCACATAGAAAATGAATCGCTTGATTACGAACCTCGGCTTTACGCACTTGAGGACAACTCCGATAAATTTGTAGACCTGGACCCCATAGACATGCCTATGAATGAGTTCGATCCTGAGCTGCTCTCAGACCTTGGGCCGGCATTTAAGCATCTGGCTTCTATCTGTAACCCAGGGACACCGTCAAAACCAGAAGTGACGAAGAACGGGATCAGATAGTGCAGGGATGAAGACGAGGATGAAGATGTTTCACCTTCTTATTCACGAGAAATCaatccatcaatcaatcaatgaggAGATTATAAAAGTCTTTCATAAAAACTGCTCAGTTTGATTGGGATTAAATTAGGTGGTATAATAgcgttgtttttttattattcaaacatGAATGCGAATAAAATTCAcactttgatttttattttgagatctatttcaagtgaaataaaatgcaccTGCAAAGTTATTACTACCTCAGTTTGATAAACTGCAATTACCTGTATTTCAATAATGTTTACATATCCTAAAACATATGTTTAACAACTCAGGGTTACAAATAATTCTCTATTAGCTCCATTTGCccgttttgtattttatttagattttatatctTAACGTTTGACgtttaaatgccttttttccTTACACgatcaaaatgtattaacaaaaaacaacaacaacaatctgCAAATATGTGAAGGAAATCAGAGAATAgtacagaaatgtattattgtgtATGACTCAGTGCTTGATTACCTTATTTCcttttctaaatgtttattgagTGAATGTTTTCTTTCGGGATCTCTATAACCGCACACCCGCATCACCCTGTCACGCCATTCCAGCATTTATGAATTCTCTTCATCTGTGaaaataaagatgatttttcCTGACCATAACAGACGTGGGGTAATGTCTGTAGCTGCTGTCacacagaattgtcatttttgggggaAGTGTTCACGAAAGCACTCTGTGTTCAAAATGAGCGAAATCCATGTAATTAACTAGTACAACATGACTTCATATTCCCGACGGAGCCTTTTTTATCTTATCCTGAA

Function

NR:

description
PREDICTED: cadherin-like protein 26 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251592.1 True 4066 mRNA 0.42 17 3691160 3702206

Neighbor

gene id symbol gene type direction distance location
LOC122353608 LOC107658808,LOC107568054,LOC107750169 coding downstream 2880 3683809 ~ 3688280 (-)
LOC122354690 NA coding downstream 12234 3678762 ~ 3678926 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding downstream 234226 3454410 ~ 3456934 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding downstream 305369 3381485 ~ 3385791 (-)
pusl1 NA coding downstream 392098 3285961 ~ 3299062 (-)
si:ch211-253b8.5 si:ch211-253b8.5,LOC107653378,LOC107568061,LOC107592587,LOC107680420,LOC107730476 coding upstream 2366 3704572 ~ 3715578 (-)
bmp7a bmp7a,LOC107730480,LOC107657209,LOC107568055,LOC107751030,LOC107658719 coding upstream 30776 3732982 ~ 3742362 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516,LOC107592586 coding upstream 45287 3747493 ~ 3749711 (-)
zgc:113223 zgc:113223,LOC107698001,LOC107556176,LOC107745344 coding upstream 83325 3785531 ~ 3791150 (-)
apc2 apc2,LOC107745340,LOC107592552,LOC107556194,LOC107710448,LOC107658524,LOC107698002 coding upstream 220094 3922300 ~ 3950755 (-)
G79010 NA non-coding downstream 33871 3654282 ~ 3657289 (-)
G78969 NA non-coding downstream 276236 3412874 ~ 3414924 (-)
G78919 NA non-coding downstream 423485 3266756 ~ 3267675 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding downstream 424488 3266184 ~ 3266672 (-)
G78903 NA non-coding downstream 458418 3231127 ~ 3232742 (-)
G79069 NA non-coding upstream 14483 3716689 ~ 3719414 (-)
G79075 tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025 non-coding upstream 50724 3752930 ~ 3759723 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding upstream 77793 3779999 ~ 3780317 (-)
G79126 NA non-coding upstream 406898 4109104 ~ 4112070 (-)
G79172 NA non-coding upstream 672442 4374648 ~ 4375393 (-)
G79003 NA other downstream 150105 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 434948 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 577468 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 642936 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 704629 2986458 ~ 2986531 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 111299 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 211042 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 259775 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 2036810 5739016 ~ 5765140 (-)
G79565 NA other upstream 2393927 6096133 ~ 6096480 (-)

Expression


Co-expression Network