LOC122353772 (spata16,LOC107593153)


Basic Information

Item Value
gene id LOC122353772
gene name spata16,LOC107593153
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15842161 ~ 15949590 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251651.1
ATGGAGGGAGGGCTGGAGGAGAGGGAGAGGACACACGGCTGCCTACCAATCACACCTTTAGAACGACAAGGCGCCCATCGATCCACACCGTCCTCACACTCCACTGCCAATGGAGAGGTGGGAAGTGGAATTTTGACTGCTATAACGACAGGGGCAACAGGTAGCCTGGCATATAATGAGCCCATTAAATCCCATGAGGCTGAGAATTTGGCGGCAAAAAAAGAGCTGGCTGACATATTGGACGGGACGCGGAAAGACACGAGGAAGAGACACGGAGAGCCGGAGGAGGAACTAAAGCTGAAGAAAATTGTCACTGTTATGAAGAGCTTTGGGTTCGCTGTTGCCATAGATACTCCATGGCCTTTCCACTCGGAGAGTGCTGCTGAATCAACGCATTACTCTGGCACTCCGAGGCAGGTGAACACAGCCCAAAAGAAATCAATGGGGAAGAGAAGCACAGCAAACTCGACTGGAAGCCTGGAGCTCCAGGGACTACAGCAGACAGCTCTCACGGAGCATCCAACGCCTGCCACAGTCCAGGCAAACCATCCCGAGGACAAGGgccaaaacaagagaaaagggaaaaagacAGACAGCGGTGCCCCAAAGAGGAGCAAGAAGAATGACACCCGAAGAAAAGATGGATCGCCGGATGGCTGTGCGGGAGCAAATAATGAACGAAGCCCCCTTCCCGCGCCCCCTCGCATTTCTCTAAGAGACCTGATGGAGGCTGAGACAAAGTTAGTGTTCGGTGACGAACAGGACATTACCCACAAGTCCCTGGCCTCCACCGCCACACAATTAATGTGTCAAGCGGCTGAAATAGGAGGGCCTCCGAGTGGACCTAATCTCAGCTTTCTGCCTCAAATTGACAAATGGCTCGATGTAGCTTTACAGGACGCCAACTCGTACTACCAACAGAAGAAATATGCCACTGCAGCCAGCCGTTTCACTGCTGCACTAGAGCTGTGTTCCAAAGGCTCCGTGTTTGAGAAACCTTTTAATGCTGGTTATGAAGACATCTGTAAAGTTGCCAGCTTTGTTGAGTCCAGAATAGTCTCCTGCTATCTCCGAATGAAAAGGCCTGACCGGGCATTGCTGCATTCCTACAGGAGCATCCAGCTAAACCCCATACGTTTTCAGAACCACCTTCGACAAGCCATGGCGTATCGACTGCTGGGAAACCCCTGCGAGGCAGCGAGGGGCGCCATGATTGCTGACTACATTTACTGGCTGTCAGGAGGCAACAACCGGCACATAAGCAAGCTCATCAAACTGTATTGGCAGGGGCTCCTAGAGGCAGCGCTCACTATGAAGAAGAATTTCTCAGTCATGTTCACTGCCTGGTCTGAAAAACCATCCTCAAACATCATAGAGAAAATAGAGGAGGCCTTCCGGAAGCTTCATCCCGCTTTCACAGACTACATTTTTACTGACCCAAGTGGAGGTCATGTGTTGCCACAGACAACAGACTGGAGTCAACCTTCATCCACACAGAGTTACTTCCTCACCCTAGGCTTCAGAAGGAGAGATGATGGAGACTTCCTACATAAACTGCTCCACGGGAGATGTCCAACATTTACAGGGCAAAGATCTCCATTCACTCCTCCCAGCTATAGAGACCTTGAGATGATGTATGAGATGCAAGGAAAGAAGATCCTGCCCGTTCTAGATTTCATTAAGTGCACTAAGCTAAGTGTGGGATTTTCCCAAGGATCTGTACTCATAGAGCGACTGCAGTATGCTAGTGTCCTAGGACAGCTGAACAGGTTCAGAGAACACACGCATGTACTGCAGTACACGCTAGCTGAGCTAGCGGTCGCACCCTACCTGCAGGACATCAGTCCTTCTGACACAGAGCTGCTGCTGGCTCTAATGGCAGACACCATGGACACCCTTGAAGGCAAGCGGCCTGATCAGGAACGTGTGTGGAATGCAATGCAAAAGGTGATGGCAGTGAAGGAGATGCTTTATCAGCTAGAGGAGGCCTACCTAAAGGAGGCGGTGCTGAGAGCCACCAGAAAGCAAAAGGCTAAAGCGAAGAAAGCCCTGAAAAGCTGTCCCTCAGGAGTCCCCCACACCACCTCAGGGCCGACCGAACGCAGCGGCCGACCCTCAGCCCAGTCATCCAATAAGTGA

Function

symbol description
spata16 Predicted to be involved in spermatogenesis. Located in Golgi apparatus. Implicated in spermatogenic failure 6.

NR:

description
PREDICTED: spermatogenesis-associated protein 16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251651.1 True 2139 mRNA 0.51 12 15842161 15949590

Neighbor

gene id symbol gene type direction distance location
b3gnt5a b3gnt5a,LOC107593139,LOC107656073,LOC107753797,LOC107674530,LOC107718888,LOC107563744 coding downstream 60472 15776187 ~ 15781689 (-)
LOC122353685 NA coding downstream 193816 15646561 ~ 15648345 (-)
LOC122353771 NA coding downstream 210893 15630130 ~ 15631268 (-)
zgc:193807 NA coding downstream 218148 15622922 ~ 15624013 (-)
itgb6 itgb6,LOC107747010,LOC107680548,LOC107597145,LOC107674564,LOC107718899 coding downstream 251697 15577606 ~ 15590464 (-)
tbl1xr1a tbl1xr1,LOC107600277,LOC107718892,LOC106584305,LOC107557783 coding upstream 482064 16431654 ~ 16472967 (-)
LOC122354663 LOC107753811,LOC107656084,LOC107593146 coding upstream 604818 16554408 ~ 16555675 (-)
LOC122354689 kcnmb2,LOC107600278,LOC107656067,LOC107699784 coding upstream 705542 16655132 ~ 16660615 (-)
LOC122354367 LOC103358720 coding upstream 816783 16766373 ~ 16769063 (-)
LOC122353589 LOC103358720 coding upstream 940000 16889590 ~ 16891932 (-)
G82311 NA non-coding downstream 50072 15789545 ~ 15792089 (-)
G82296 NA non-coding downstream 103420 15734557 ~ 15738741 (-)
G82286 LOC107593138,LOC107655962,LOC107753871 non-coding downstream 109403 15717597 ~ 15732758 (-)
G82294 NA non-coding downstream 112346 15728789 ~ 15729815 (-)
G82260 NA non-coding downstream 228310 15613146 ~ 15613851 (-)
G82347 NA non-coding upstream 181192 16130782 ~ 16131481 (-)
G82370 naaladl2,LOC107674503 non-coding upstream 265526 16215116 ~ 16215611 (-)
G82372 naaladl2,LOC107600312,LOC107674503 non-coding upstream 294111 16243701 ~ 16243954 (-)
G82374 NA non-coding upstream 333826 16283416 ~ 16283618 (-)
LOC122354638 NA non-coding upstream 382554 16332144 ~ 16334070 (-)
LOC122354045 NA other downstream 227224 15595565 ~ 15614937 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other downstream 265096 15552356 ~ 15577065 (-)
LOC122354564 NA other downstream 440470 15400918 ~ 15401691 (-)
LOC122354561 NA other downstream 606725 15233933 ~ 15235436 (-)
G82067 NA other downstream 628103 15204961 ~ 15214058 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 641216 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 654414 16604004 ~ 16606580 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 829322 16778912 ~ 16912574 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other upstream 1587913 17537503 ~ 17540171 (-)
G82588 phf2,LOC107556181,LOC107685641 other upstream 1600991 17550581 ~ 17559836 (-)

Expression


Co-expression Network