sptbn1 (sptbn1,LOC108442064,LOC108270927)


Basic Information

Item Value
gene id sptbn1
gene name sptbn1,LOC108442064,LOC108270927
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12375113 ~ 12466443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251710.1
CCCGCCCCGCGTCTCGGTGCAGCAGCTGACGGGGAGGGAGGCAGTGCGCATCGGTCACTCCCAGCGCAGTGTgtccagcctctctctctctctcgctcatcGCGCGCTGCGGACTCCAAAGGCGGCGAAGTTTATCGCGTATTCTTCTATCGCAGGGCTTCAGAGGAAGCCGCCCATGAGGAAGTGTGTAGTGTGAAAAGGcgaaaggtcagaggtcaggatGACGACGGTAGCCGCAGAATTCGACCACATGGACATCCAGCAGCAGTACCAGGACAGCGTCAACAACCGCTGGGATGACGAGTGGGACAACGAGAACAGCTCGGCCCGGTTATTCGAGCGCTCGCGCATCAAGGCTCTGGCAGACGAGCGAGAGGCCGTGCAGAAGAAGACCTTCACTAAATGGGTGAACTCTCACCTGGCGCGAGTGTCCTGCCGGATCACGGACCTCTACATGGACCTGAGAGACGGACGGATGCTCATCAAGCTGCTGGAGGTCCTGTCCGGAGAGAGACTGCCCAAGCCGACGAAGGGCCGCATGCGCATCCACTGCCTGGAGAACGTGGACAAGGCCCTGCAGTTCCTCAAGGAGCAGCGCGTTCATCTGGAGAACATGGGCTCGCATGACATCGTCGACGGAAACCACCGACTCACGCTCGGCCTGATCTGGACCATCATCCTCCGCTTCCAGATCCAAGACATCAGCGTAGAGACGGAAGACAATAAAGAGAAACGCTCCGCCAAGGACGCGCTGCTTCTGTGGTGCCAGATGAAGACCGCAGGCTATCCCAACGTCAACATCCACAACTTCACCACCAGCTGGCGGGACGGCATGGCTTTCAACGCCCTCATTCACAAGCACAGGCCAGACCTGATTGATTTCGACAAGCTGAAGAAGTCCAACGCTCACTACAACCTGCAGAACGCCTTCAACCTGGCCGAGCAGCACCTGGGCCTCACCAAACTCCTGGACCCAGAAGATATCAGCGTGGACCACCCCGACGAGAAGTCCGTCATCACTTACGTCGTCACCTACTACCACTATTTCTCCAAGATGAAGGCGCTGAAGGTGGAGGGCAAGCGCATCGGAAAGGTGCTCGACAACGCCATCGAGACTGAGAAGATGATCGAGAAATACGAATCTCTGGCGTCTGACCTGCTGGAGTGGATCGAGCAAACCATCATCATCCTCAACAACCGCAAGTTCGCCAACTCTCTGGTTGGAGTCCAGCAGCAGCTTCAGGCCTTCAACACTTACCGGACGGTAGAGAAGCCGCCCAAATTCACTGAGAAAGGCAACCTGGAAGTGCTTCTCTTCACGATCCAGAGCAAGATGAGGGCCAATAACCAGAAAGTGTACATGCCACGAGAGGGCAAACTCATCTCAGACATCAACAAGGCGTGGGAGCGTCTGGAGAAGGCCGAGCACGAGCGAGAGCTGGCGCTGAGGACCGAGCTGATTCGACAGGAGAAGCTGGAGCAGCTCGCCAGACGCTTCGACCGTAAGGCGGCCATGAGAGAGACCTGGCTGAGCGAGAACCAGCGCCTCGTCTCCCAGGACAATTTCGGATTCGACCTCCAGGCGGTCGAGGCAGCTACCAAAAAGCACGAGGCCATCGAGACGGACATCGCGGCGTACGAGGAGCGCGTGCTGGCGGTGGTGGCCGTGGCTAAGGAGCTGGAGGCGGAGAACTACCACGACATCAAACGCATCGCCGCGCGCAAAGATAACGTGCTGCGTCTCTGGGAGTATCTCCTGGAGCTGCTCAAGGCCCGCAGACAGCGGCTGGAGATGAACCTCGGCCTGCAGCGCGTCTTCCAGGAGATGCTCTACATCATGGACTGGATGGACGAGATGAAGATGCTGCTGCTGTCTCAGGATTACGGGAAGCACTTGCTGGGAGTGGAAGATCTGCTGCAGAAGCACGCTCTGGTGGAGGCCGACATCGGGATTCAGGCCGACCGCGTCAAAGCCGTCAACGCCAACGCTCAGAGGTTCGCCGTGGATGAGGAGGGCTACAAACCCTGTGACCCTCAGGTCATTCGTGACCGAGTGGCCCACATGGAGTTCTGCTACCAGGAGCTGACCCAGCTAGCGGCCGAGCGCCGGGCCCGTCTGGAAGAGTCCCGCCGCCTCTGGAAGTTCTTCTGGGAGATGGCCGAGGAGGAGGGCTGGATCCGCGAGAAAGAGCAGATCCTGTCCTCGGACGACTGCGGCAAGGATCTGACGGGCGCCGTGCGTCTTCTGAGTCAACACCGCGCCCTGGAGGACGAAATGAGCGGGCGAGCCGGTCACCTCCAGCACACGGTGCGCGAGGGTCAAGCCATGGCCGACGCCGGGCACTTCGGCGAAGATAAGATCCGCGAGCGCATCGCCGACGTCCAAGCGCAGTGGGCCGCTCTGGAGCAGCTGGCGGCGGTGAGGAAAAAGCGCTTGGAGGAGGCCTGCAGCCTTCACCAGTTCCAGGCCGACGCGGACGACGTCGACGCCTGGACTCTGGACGCGCTTCGGATCGTCTCCACGGCTGACGTCGGCCACGACGAGTTCTCCACTCAAGCGCTGGTCAAGAAGCACAAAGACGCCTCGGCCGAGGTGGCCAGCTACCGCCCGGTCATCGACGCCCTTCACGAACAGGCCCAGTCGCTTCCTCCGGAGCAGGTGCAGGCGGCTAACGTCAACGAGCGGCTGGCGGGCATCGAGGAGCGCTACAAGGAGGTCTCGGAGCTGACCCGGCTGAGGAAACAGGCCCTGCAGGACGCCCTGGCGCTCTATAAGATGTTCAGCGAGGCGGACGCGTGCGAGCTCTGGATCGACGAGAAGGAGCAGTGGCTCAACAGCATGGAGATCCCGGAGAAGCTGGAGGACCTGGAGGTCATTCAGCACAGGTTCGAGAGTCTGGAGCCCGAAATGAATAACCAGGCCTCACGCGTGGCCGTAGTCAATCAGATCGCCAGGCAGCTCATTCACAGCGGACACCCGAGCGAGAAAGACATCAAAGCCCAGCAAGACAAACTCAACACCAGGTGGAGTCAGTTCCGAGACCTGGTGGACCAGAAGAAAGAGTCCCTCCACTCTGCTTTGGGCGTCCAGAACTACCACCTGGACTGTAACGAGACCAAATCCTGGATCCGCGAGAAGACCAAAGTCATCGAGTCCACCCAGGAGCTGGGCAACGACTTGACGGGCGTCATGGCCCTCCAGCGCAAGCTCACCGGCATGGAGCGCGACCTGGCCGCCATCGAAGCCAAACTGGGCGACCTCCGCGGCGAGGCGGAGCGCTTGGCCGGAGAACACCCCGACCAGGCCAAAGCCATCACGGGACGGCTGGCCGAGATCACCGCCGTTTGGGAGGAGATGAAGGAAACCCTCAAAAACCGCGAGGCGTCTCTCGGGGAGGCCAGCAAGCTGCAGCAGTTCCTCCGAGAGCTGGACGATTTCCAGTCCTGGCTTTCCCGCACGCAGACGGCCATCGCGTCCGAGGACATGCCCAACACGCTGGCCGAGGCCGAGAAGCTCCTGGCCCAGCACGAAGGCATCAAGAACGAGATCAACAACTACGAAGAGGACTACCAGAAGATGAGGGACATGGGCGAGATGGTGACGCAGGGGCAGACGGACGCTCAGTACATGTTCTTGAGACAGAGGCTCCAGGCTCTGGACACCGGGTGGAACGAGCTTCATAAGATGTGGGAGAACCGGCAGAACCTCCTGTCTCAGTCTCACGCCTATCAGATCTTCCTCAGAGACACCAAACAAGCCGAGGCTTTCCTCAACAACCAGGAGTACGTTCTGGCTCATACCGAGATGCCCACCACCCTCGAAGGAGCAGAAGCTGCCATCAAGAAGCAGGAGGACTTCATGACCACCATGGACGCCAATGAGGACAAGATTAACGGAGTGGTGGAGGCCGGAAGGAGACTGGCCAGTGACGGAAACATCAACGCCGACCGCATCCAGGAGAGAGCGGCCTCCATCGATGACCGCCACAAGAAGAACCGTGAAGCGGCCGTGGAGCTGCTCATGAGGCTGAAGGACAACAGAGACCTGCAGAAGTTCCTTCAGGACTGCCAGGAGCTGTCCCTGTGGATCAATGAGAAGATGCTGACAGCACAGGACATGTCCTACGATGAAGCTCGTAACCTGCACAGCAAATGGCTCAAACACCAGGCCTTCATGGCCGAACTGCAGTCCAACAAAGAATGGCTGGACAAAATCGAGAAGGAAGGGAAGCAGCTGGTCTCGGAGAAGCCGGAGACAGAAGCTGTAGTGAAGGAGAAGCTGGCGGCGCTGCAGAAGATGTGGACCGAGCTGGAAACCACGACTCAGACTAAAGCCCAGTGTCTGTTTGACGCCAACAAAGCCGAGCTCTTCACGCAGAGCTGCGCCGATCTGGACAAATGGCTGGTGGGCCTGGAGGGTCAGATCCAATCGGACGACTACGGCAAAGATCTGACCAGCGTCAACATCCTGCTCAAAAAACAACAGATGCTGGAGAACCAGGTGGAGGTGCGTCAGAGGGAGGTGGAGGAGCTCCAGTCTCAAGCTCATGTGTTGAGACAGGAGGGAAAGGACACAGATGAAGTCGACGGCCGCAGGAAGGTGGTGGAGCTGAAGTTTAAGGAGCTGCTGGATCCGCTGCAGAAACGGAAAGACTTCCTCATGGCCTCTCGTGAGATTCATCAGTTTAACCGCGACATGGAGGATGAGATTCTCTGGGTTGAGGAGCGGATGCCTCTCGCTACATCAACAGACCACGGCCACAATTTACAGACCGTTCAGCTGCTTATAAAGAAGAACCAGACGCTGCAGAAGGAGATCCAGGGCCATCAGCCGCGCTGCGACGACATACTGGAGCGCAGCCAGAGCATCCTGAAGGCCGACAGTCCCAATGTGGAATCCATCCGAGCCCGTCTGTCCGACCTGCAGCAGCTCTGGAGCCTGATCATCCAGGAGACGGAGAAGCGCCACACCAGACTCGAGGAGGCCCATAAGGCCCAGCAGTACTACTTTGACGCGGCCGAAGCCGAAGCCTGGATGAGTGAGCAGGAGCTCTACATGATGTCTGAAGAGAAAGCCAAGGATGAGCAGAGTTCGGTGGCCATGCTGAAGAAGCATCAGATCCTGGAGCAGGCGGTGGAGGACTACGCCGAAACCGTGCACCAGCTCTCCAAGACCAGCCGAGGCCTGGTGGCCGCCAACCACCCCGAGAGtgAGAGGATCGGCATGCGTCAGTCTCAGGTGGATAAGCTGTACGCCGGACTCAAGGACCTctcagaggagaggagaggcaAGCTGGAGGAGCGCTTCCGCCTCTTCCAGCTCAACCGGGAGGTGGATGATCTGGAGCAGTGGATCGCTGAGAGAGAGGTGGTGGCTGGATCTCACGAGCTCGGACAAGACTACGAGCACGTCACTATGTTGCAGGAGCGTTTCCGTGAATTCGCTCGTGACACAGGAAACATCGGTCAGGAGCGCGTGGACGGTGTGAACCGGATGGCGGACGATCTGATAAACGCAGGGCACGCTGACGCAGCGACTGTGGCCGAGTGGAAGGACGGTCTGAACGAGGCCTGGGCCGATCTGCTGGAGCTCATCGACACGCGCACGCAGATCCTCGCCGCATCCTACGAGCTGCACAAGTTCTACCACGACGCCAAGGAGATTCTGGGACGCATCCTGGACAAGCATAAGAAGCTTCCGGAAGAGCTGGGCCGAGACCAGAACACGGTGGAAACCCTGCAGAGGATGCACACCACGTTTGAACACGACATTCAAGCTCTTGGGACACAGGTCAGGCAGCTGCAGGAGGACGCCGTGCGTCTGCAGTCGGCGTACGCCGGGGATAAAGCGGACGACATCCAGCGGCGCGAGGGAGAGGTGCTGGAGGCCTGGAGGAGTCTGCTGGAGGCCTGCGAAGGACGAAGGACCCGACTGCTGGACACCGGAGACAAGTTCCGCTTCTTCAGTATGGTGCGGGACCTCATGCTCTGGATGGAGGACGTCATCCGCCTCATCGAGACGCAGGAGAAGCCCAGGGATGTGTCGTCTGTGGAGCTTCTCATGAACAACCACCAGGGAATCAAGGCTGAAATCGATGCTCGTAATGACAGTTTTACGGCCTGCATCGAGCTGGGCAAATCTCTCCTGGCACGGAAACACTATGCATCAGAGGAGATCAAAGAAAAGTTGTTGCAGTTGACGGACAAGAGGAAAGATATGATTGACAAGTGGGAGGACAGATGGGAGTGGCTTAGACTgattctGGAGGTGCACCAGTTCTCACGGGACGCTGGCGTGGCCGAGGCGTGGCTGCTGGGACAGGAACCGTACCTCTCCAGCAGAGAGCTCGGACAGAGCGTGGACGAGGTGGAGAAGCTCATCAAACGCCACGAAGCCTTCGAGAAATCAGCCGCCACCTGGGAGGAGCGCTTCTCGGCGCTCGAGAGACTGACTACgTTGGAGTTATTGGAAGTGAGAAGACAgcaagaggaggaagagaggaggaggaaaccGCCCACGCCGGATCCGGTCCAGGCACAGGACGCTGAAACACAGCAGAGagaAGGAGAGCAGATTGCCCAGAACGGACTGCCATCAGACCAGGACTCTCCACGGGATGGAGTGGACGGAGAGATGAACGGAGTGCCTGAGAGGAGCTCGAAGGAGCCGAGTCCCATCCCGTCTCCGAGCGCAGACAGACGGGGCAAAGGCAGCCAGTCGGCCACGCTGCCGGCGAAGGGTCAGGAGACGCCGTCTGCGCAGCTCGAGGGACTCCTGCACCGCAAACACGAGTGGGAGGGACACAACAAGAAGGCCTCCAGCAGATCCTGGCATAACGTGTACTGCGTCATCAACAACCACGAGATGGGCTTCTACAAAGACAACAAGAGCGCGGCGCAGGGCATCCCGTACCACAGCGAGATCCCCATCAGCCTGAAGGAGGCCGTCTGCGAGGTGGCCGTCGACTACAAGAAAAAGAAGCACGTCTTCAAGCTCAGAGTTACTGATGGGAACGAGTATCTCTTCCAAGCCAAAGATGATGAGGAGATGAACACGTGGATCCAGGCCATTCAGAACGCGGGCAGCGGCTCGTCGTCCTCCGAGAAGTCCGAGATCACGCCGAGCAACCAGAGCACGCCGGCCTCGAGCCGCGCTCACACACTCCCGGCCACCGTGACCCTGACGAGCGAGTCCAGCCCCGGCAAGCGCGAGAAGGACAAGGAGAAGGACAAGGAGAAGCGCTTCAGCCTCTTCAGCAAGAAGAAGCAGTAGGCGTCCGAAAGCGATCGGCTCATTCCCTCGActttttcgttttttgtttcgttttttttattttgtgtccgCCCACCTCCTCCAGTGATATCCCAGCATGCAAAGCTCATAAAGACGCCACACTCTGTGCCTGAAAACGCCCGCCGATCGGGTCCAAAGTTgtacaaaaaaccaaaaaaacaaaacgcaagAGTGTGCGTCGCGATTTCGGGGAACGTCTGCGTTTTTTTTTACGCTCTTACGTTTCTATCGTGGGTTGATTTTTTTGAAATTCCGACTATTGCTACGTCTCTGGTTTTTTTGTAACTGCGCGCCATCGAGGGGGTCtggatatttaaaacatttcctcaatTTTTATGAGGCCGTCTCGGAGATTCGCCGAGTCTCTGCTTCAAAAAACCGACACAATTCCACGCTAacgtcaaaaacaaaaaaaaccgaCTATAAGCTGATCGACTAATATTAACATTGGCTCGAAGGCACGGTGGACTTGCGTCACGTGATCGTTTGCTACGTACAGAGAACTAGTAACCCGACGTCatgcttctttctttttaaccGTTCGTTTTAATCGTCATTTCTCTTGGGTTTTTATCATAATATATGTTTCGAATAATTCTAGTTACAAAAAGAGTATAAGAATTAGATGTATTATAAACACTTTAAAGCATCAATGTTAAGTGAACAGTGCGACATTTACTGGTAAAAAAGGTAATGTTACTCCAGCTACGAAAAAAAcgcaaaaagaacaaaaaaaataataacaatgaaaatatatgaatacGGTTACTTGCTTGTGGGCTATAGCACTGagcattctctttttttctctttgttttctcgTCTCCGGGCTTCATCCCGCTCTGCTCTTTGATACATAGTGCGCATCCCCTCCGTCACTGTATCTATTGTAATGAGATTTTCATCTACTGCACAATCAGAAGCATCATAATAGGAATGAAATCCTGGCGATGTCGGGCGTCCTGAGCGCTATAGATCCGCTCAGATGTATGAAACCGCACCTGTAGACTTTAACCTCCCTGCCCTGTTAAATATGTGCGATGtcattaaatgcttttaaacatta

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

NR:

description
spectrin beta chain, non-erythrocytic 1, partial

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251710.1 True 8360 mRNA 0.57 37 12375113 12466443

Neighbor

gene id symbol gene type direction distance location
acyp2 acyp2,LOC107712999,LOC107744585 coding upstream 10704 12347655 ~ 12364409 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding upstream 208771 12162078 ~ 12166342 (+)
LOC122353838 LOC108444238,LOC108271228 coding upstream 420042 11893348 ~ 11955071 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding upstream 491683 11870425 ~ 11883430 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding upstream 563407 11795535 ~ 11811706 (+)
eml6 eml6,LOC107597181,LOC107680471 coding downstream 6276 12472719 ~ 12523419 (+)
LOC122353873 NA coding downstream 134640 12601083 ~ 12602840 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding downstream 143469 12609912 ~ 12612530 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding downstream 235864 12702307 ~ 12714931 (+)
pde12 pde12,LOC107682749,LOC107680466 coding downstream 249433 12715876 ~ 12719865 (+)
LOC122353894 LOC107657969 non-coding upstream 2502 12365659 ~ 12372611 (+)
G81241 NA non-coding upstream 134722 12240133 ~ 12240391 (+)
G81240 NA non-coding upstream 135362 12239531 ~ 12239751 (+)
G81238 NA non-coding upstream 135868 12238470 ~ 12239245 (+)
G81236 NA non-coding upstream 136757 12237818 ~ 12238356 (+)
G81255 NA non-coding downstream 57410 12523853 ~ 12524317 (+)
G81261 NA non-coding downstream 104880 12571323 ~ 12571790 (+)
G81266 LOC107712996,LOC107657949,LOC107557396 non-coding downstream 113464 12579907 ~ 12594103 (+)
G81254 NA non-coding downstream 146142 12612585 ~ 12613651 (+)
G81378 asb14,LOC107680484,LOC107579398 non-coding downstream 222704 12689147 ~ 12690998 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 149621 12192754 ~ 12225492 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 506590 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 517794 11827878 ~ 11857319 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 674899 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 702156 11580026 ~ 11672957 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 64883 12531326 ~ 12535426 (+)
G81268 NA other downstream 116472 12582915 ~ 12585641 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other downstream 203346 12669789 ~ 12700884 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 301764 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 409070 12875513 ~ 12879313 (+)

Expression


Co-expression Network