clcn4 (clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096)


Basic Information

Item Value
gene id clcn4
gene name clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11870425 ~ 11883430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251730.1
CGTGACGTTCACACGCGCCCTGACGTCATCACGTTACGTCGCCGTCCTGCCGCATCGGTTTATTCTGCTGTTATGATGGATAAACACTACGAACTGTCGCCGCATCTTTAATCTGTTACACGAACAGCGATATGGCGGAGGCAGAGGGCATCAGCAGTGCCACTCCTACAGAGGAGATGAACGGCGCTGGGAACCTGATGGACTTCTTGGACGAGCCGTTCCCTGACGTCGGCACTTACGAGGACTTTCACACAATCGACTGGTTGAGAGAAAAATCCAGAGACACGGACAGACACCGGAAGATCACCAGTAAGAGTAAGGAGTCCATCTGGGAGTTCATTAAGAGTTTGCTGGACGCCTGGTCAGGATGGCTGGTGATGCTGCTGATTGGTCTGCTGTCAGGTACTCTGGCCGGAGTGATCGATCTGGCTGTTGATTGGATGACGGATCTGAAGGAAGGCGTGTGTCTGTCTGCTCTCTGGTACAGTCATGAACAGTGCTGCTGGACGTCCAACGAGACCACCTTCGCCGACCGAGACAAATGTCCTCAGTGGCAAAAATGGGCCGAACTGATGACGGGATACACTGAGGGCGCGGGTGTGTATGTGCTGAACTACTTCCTGTACGTGCTGTGGGCGCTCTTCTTCTCCTTCCTGGCCGTGTCTCTGGTGCGAGTATTTGCTCCGTACGCCTGCGGATCAGGAATACCAGAGATAAAGACGATCCTGAGCGGCTTCATCATCCGGGGGTATCTGGGGAAGTGGACGCTGCTCATAAAGACGGTGACGCTGGTGCTGGCCGTGTCGTCTGGACTCAGTCTGGGGAAGGAAGGGCCTCTGGTGCACGTCGCCTGCTGCTGCGGGAACCTCTTCTGCAGCCTCTTCTCCAAGTACAGCAAGAACGAGGGCAAACGCAGAGAGGTTTTGTCGGCAGCGGCGGCTGCAGGAGTGTCGGTTGCGTTCGGAGCTCCGATCGGAGGAGTTCTGTTCAGTCTGGAGgagGTGAGTTATTACTTCCCTCTGAAGACGTTATGGCGGTCTTTCTTCGCGGCGCTGGTGGCGGCCTTCACGCTGCGCTCCATCAACCCGTTCGGCAACAATCGCCTGGTTCTGTTTTATGTGGAGTATCACACGCCGTGGTACATGGCCGAGCTGGTGCCCTTCATCCTGCTGGGTGTGTTCGGGGGCCTCTGGGGGACGCTCTTCATCCGCTGCAACATCGCCTGGTGCCGGCGGCGCAAGACCACGCGGCTGGGCAAGTACCCGGTGCTGGAGGTGATCGTGGTGACGGGGATCACTGCCGTTCTGGCCTTCCCCAACCCTTACACCCGCCGCAGCACCAGCGAGCTGATCTCAGAGCTGTTCAACGACTGCGGGGCGCTCGAGTCGTCGCAGCTCTGTGACTACATCAACAACCCCAACATGACCCGGCCCGTGGACGACATCCCCGACAGACCCGCCGGCCCCGGGGTCTACAGCGCCCTCTGGCAGCTCGCGCTGGCGCTCGTCTTCAAGATCGTCATCACCATCTTCACCTTCGGCATGAAGATCCCGTCGGGTCTGTTCATCCCTAGTATGGCGGTGGGTGCCATCGCCGGGCGTATCGTGGGCATCGCGGTGGAGCAGATGGCGTACCATCATCACGACTGGATCATCTTTAAGAACTGGTGTCGCCCAGGAGCCGATTGCGTCACTCCGGGGCTGTACGCCATGGTCGGAGCCGCCGCGTGTTTGGGCGGCGTGACGCGGATGACGGTGTCTCTGGTGGTCATCATGTTCGAGCTGACCGGCGGTCTGGAGTACATCGTTCCTCTGATGGCGGCCGCCGTCACCAGTAAATGGGTGGCCGACGCTTTCGGCAAAGAGGGCATTTACGAGGCTCACATCCAGCTCAACGGCTACCCGTACCTGGACCAGGACGAGTTCACGCACCGCACGCTGGCCACAGACGTGATGCGGCCCCGCCGGAACGAGCCGCCGCTGGCCGTCCTGACGCAGGACAGCACCACGGTGGAGGACGTGGAGACGCTCATCAAAGACACCGACTACAACGGCTTCCCCGTGGTGGTCTCGCGCGAGTCCGAGAGGCTCATCGGCTTCGTGCAGAGACGGGATCTCATCCTGGCCATCAAGAACGCTCGTCAGAAGCAGGACGGGGTCGTCAGTAACTCGGTGGTGTATTTCACCGAAGACGCTCCGCAGCTTCCCGCCTCGAACCCGCAGCCGCTCAAACTCAGACGCGTCCTGAACCTCAGCCCCTTCACCGTCACTGACCACACGCCCATGGAGACGGTGGTGGACATCTTCCGCAAGCTGGGCCTGCGCCAGTGTCTGGTCACACGCAGCGGACGTTTGCTGGGAATCATTACGAAGAAGGACGTTCTGCGACACATGGCACACATGATGAACCAGGATCCCGAGTCCATCATGTTCAACTAGACTGAACCTGTACAGCCTGATCCGTCACTAAACACTAAAACCGAGGCCAAAAGCGGACGGGCGTGACGattcaagtgtttttttactgctgtttttgccaatatttatattttacgtGCATTACTTAGTTTCAGCCGTGATGATCAACTGTTAAACGTGATGAAACCGACtggtttttattgtgtttgctGCTGAAATGTTCAGATGAGGGTCTTATTAGATTAGTTTATTAATTGCAAAAGGTCAGAATAATTCAGAATACTAATCTGCTGCGTGATAGAGACGTTTTTGTCTAACACTATAGGTTTTGTGGGAATCATTtcgttttgttattatttattaatttaacgtGGATGTCagttattttgctgttgtatTGAAAGATGATTATTGTCCTCGTAAAATAAACACTGCATCTCTGTTACAGATATTAATGTTCGTCTGCTACTCCGGTTCAGCACATACAACTGAGGGTATGTTAtgataataaagaaatattattgttaaataacaaagtta

Function

symbol description
clcn4 Predicted to enable solute:proton antiporter activity and voltage-gated chloride channel activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; early endosome; and synaptic vesicle. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; gill; heart; and immune system. Human ortholog(s) of this gene implicated in Raynaud-Claes syndrome. Orthologous to human CLCN4 (chloride voltage-gated channel 4).

NR:

description
PREDICTED: H(+)/Cl(-) exchange transporter 4

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251730.1 True 2957 mRNA 0.55 12 11870425 11883430

Neighbor

gene id symbol gene type direction distance location
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding upstream 58719 11795535 ~ 11811706 (+)
si:ch1073-365p7.2 NA coding upstream 76328 11782659 ~ 11794097 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding upstream 155074 11706108 ~ 11715351 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding upstream 270727 11597790 ~ 11599698 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 322712 11539678 ~ 11547713 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 9918 11893348 ~ 11955071 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding downstream 278648 12162078 ~ 12166342 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding downstream 464225 12347655 ~ 12364409 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding downstream 491683 12375113 ~ 12466443 (+)
eml6 eml6,LOC107597181,LOC107680471 coding downstream 589289 12472719 ~ 12523419 (+)
G80887 NA non-coding upstream 55694 11773618 ~ 11814731 (+)
G80889 NA non-coding upstream 95303 11774726 ~ 11775122 (+)
G80847 NA non-coding upstream 104371 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding upstream 105485 11761357 ~ 11764940 (+)
G80865 NA non-coding upstream 175972 11690440 ~ 11694453 (+)
G81234 NA non-coding downstream 351762 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 354388 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 355040 12238470 ~ 12239245 (+)
G81240 NA non-coding downstream 356101 12239531 ~ 12239751 (+)
G81241 NA non-coding downstream 356703 12240133 ~ 12240391 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 1902 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 13106 11827878 ~ 11857319 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 170211 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 197468 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 335311 11528719 ~ 11535114 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 309324 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 647896 12531326 ~ 12535426 (+)
G81268 NA other downstream 699485 12582915 ~ 12585641 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other downstream 786359 12669789 ~ 12700884 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 884777 12768207 ~ 13057220 (+)

Expression


Co-expression Network