LOC122353848 (LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057)


Basic Information

Item Value
gene id LOC122353848
gene name LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12927330 ~ 12955366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251732.1
CGTGCTACAAGGCTTGCCCTTCGGAGGGGTTCCCACTGTCCTCGCTCTGGACTTTATGTGCTTCCTGGTTCTTCTTTTTGTCTTCTCCATCTTGCGGAAAGTGGCATGGGATTACGGCCGCCTGGCCCTGGTGACCGATGCTGACAGACAGAAGAGAAGATTCAGCGGTCTGGAGGAGCGGGAGTAtgtctTCTGCTCTTCATTCTGAAACACCGGACCGATATGAACGTCTCACCTCCGTCTCCAGCTCGGTGGATTTCGAACAGCGAGATAATGGCTTCTGCTCCTGGTTGACGGCTATATTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAAGATGCCGTTCATTACCTGTCCTTCCAGAGGCACATCATCGGTCTGCTGGTTGTGGTGGGAGTGCTGTCGGTGGGCATCGTTCTCCCGGTCAACTTCTCAGGCAACCTGCTGGaCAACAACGCATACAGCTTTGGCCGTGTGATCGCCAACTTGAATTCTGGAAATAATCTTTTATGGCTTCACACGTCATTTGCCTTCATGTACCTGCTCCTCACCGTCTATAGCATGAGACGCCACACGTCCAAGATGCACTACAAAGAAGATGATCTGgtcAAACGCACTTTATTCATCAACGGCATCTCCAAATATGCAGAAGAAAGCCATATAAAACAGCACTTTgaACAGGCGTATGAGAACTGTGTGGTGCTGGAAGCGCGTGTTTGTTATAACGTGGCCAAGCTGATGTCCCTCAACGCTGAGAGGAAGAAGACTGAACGCAGTAAGAAGTTTTTCACGGATCTGATGGCTAAGGAGCACATGCCGGCTATGATCAACCCCAAGCCCTGCGGACATCTGTGCTGCTGCGCCATTACAGGCTGTGAAGAGGAGGAGGCTGTGAGTTATTACACCAAACTGGAGTCCAAACTGAAGGAGGAGTAcaggaaggagaaggagaaagtCAACACCAAACCACTGGGCATGGCCTTCGTCACCTTCCAGAACGAGGCCATGACGGCAATcatccTGAAGGACTTTAACGCGTGTCAGTGTCAGGGCTGTAAGTGTCGTCTGGAGCCGCGCTCTTCTCAGTTCAGTGACGGTCTTCATGTGTACGAGTGGAGCGTCAGCTACGCACCGGACCCCCAAAACGTTCGCTGGGAGAACCTGTCTTTGGGAGGGATTTCCTGGTGGCTTCGCTGCTTCATCATTAACTGcatcctcttcatcctcctcttcttcctcaccACCCCGGCCATCATCATCTCCACGATGGACAAGTTCAACGTCACCAAGCCTGTGGAGTATCTGAACaaCCCGATCATCACCCAGTTCTTCCCGACGCTGCTGCTGTGGGCCTTCTCGGCTCTGCTGCCCACCATCGTCTACTACTCCGCCTTCTTCGAAGCCCACTGGACCAGGTCTGGGGAGAACAGGACCACCATGCACAAGTGCTACACCTTCCTGATCTTCATGGTCCTCTTGCTGCCGTCTCTGGGTCTCAGCAGTTTGGACGTTTTCTTCCGCTGGCTGTTTGACAAAAAATTCCTGGCCGAAGCCACCGTCAGATTtgaGTGCGTCTTCCTCCCTGATAACGGAGCATTTTTTGTGAATTACGTCATTGCGTCTGCGTTTATCGGAAACGCCATGGATCTGCTGAGGATTCCCGGCCTGCTCATGTACATGATCCGACTGTGTTTGGCTCGCTCGGCCGCGGAAAGACGCAACGTCAAACGGcaTCAAGCCTACGAGTTTCAGTGAGCTGCCTACGCCTGGATGATGTGCGTTTTCACCGTTGTCATGACGTACAGCATCACCTGCCCAATCATCGTCCCCTTCGGACTGATGTACATGCTCCTGAAGCACCTGGTGGACCGCTACAACATGTACTACGCTTACCTGCCCTCCAAACTGGACAAGAAGATCCACTCGGGAGCCGTCAATCAGGTGGTGGCCGCACCGATCCTCTGCCTCTTCTGGCTGCTGTTCTTCTCCACCGTCAGGACAGGGTTTTTGACCCCGACGTCCATGTTTACCTTCGTGGTGCTCATCATCACCATCGTGGTCTGTCTGTCGCACGTGTGCTTCGGTCACTTCAAGTACCTCAGCGCGCACAACTACAAGATCGACACCAAGGACACCGAGGCCGACGGAGTGGAGAACGGACGGCCTGCCAGATCCTCACCCTCCAACAAATCCCAGCAGATGTACATCGCCCAGGTCCTGCAGGACCCAAACTCTGACGAGACCGGAGCGGGCAGCGGAGAGGACGACGGCCAGGGGTCCTCGCAGGACGAGGAGATGATCAACGCCGGGAACAGCCTGAACGAGGCCGACTTCCAGTCCGGGGACAGCCTCATCGCCAACGAGGTGCACCAGTAACGACCAGAGACCCGGCTCCGAACATCAGCACCTTAGAAACCCACGTCTGCCAAAACACTCAGACTGTACATAAGCACAcgctcgcaaaaaaaaaaacaaaaaaacacacatgcatgaaac

Function

NR:

description
PREDICTED: CSC1-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251732.1 True 2504 mRNA 0.54 26 12927330 12955366

Neighbor

gene id symbol gene type direction distance location
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding upstream 189690 12732754 ~ 12737640 (+)
pde12 pde12,LOC107682749,LOC107680466 coding upstream 207465 12715876 ~ 12719865 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding upstream 212399 12702307 ~ 12714931 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding upstream 314800 12609912 ~ 12612530 (+)
LOC122353873 NA coding upstream 324490 12601083 ~ 12602840 (+)
LOC122353891 slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 coding downstream 79271 13034637 ~ 13055876 (+)
LOC122353677 LOC107747780 coding downstream 204776 13160142 ~ 13161913 (+)
ctdspl3 ctdspl3,LOC107747402,LOC107680535,LOC107553546,LOC107597167 coding downstream 258942 13214308 ~ 13220680 (+)
ndufs7 ndufs7,LOC107597168,LOC107680537,LOC107747413,LOC107685366,LOC107553547 coding downstream 266473 13221839 ~ 13226883 (+)
dazap1 dazap1,LOC107680526,LOC107757952,LOC107747374,LOC107685225 coding downstream 278399 13233765 ~ 13252149 (+)
G81420 NA non-coding upstream 3159 12865979 ~ 12924171 (+)
G81422 NA non-coding upstream 31223 12889966 ~ 12896107 (+)
G81421 NA non-coding upstream 37447 12887410 ~ 12889883 (+)
G81393 LOC107557402 non-coding upstream 200095 12725794 ~ 12727235 (+)
G81378 asb14,LOC107680484,LOC107579398 non-coding upstream 236332 12689147 ~ 12690998 (+)
G81424 LOC107680494,LOC107574810 non-coding downstream 10405 12965771 ~ 12976155 (+)
LOC122353896 NA non-coding downstream 22223 12977589 ~ 13019135 (+)
G81427 NA non-coding downstream 192392 13147758 ~ 13228578 (+)
G81448 NA non-coding downstream 354955 13310321 ~ 13312912 (+)
G81454 NA non-coding downstream 359196 13314562 ~ 13315699 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other upstream 48017 12875513 ~ 12879313 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other upstream 57209 11752545 ~ 12870121 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 226446 12669789 ~ 12700884 (+)
G81268 NA other upstream 341689 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 391904 12531326 ~ 12535426 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 209395 13164761 ~ 13210690 (+)
G81434 NA other downstream 273577 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 418655 13374021 ~ 13383843 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other downstream 446921 13402287 ~ 13410126 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other downstream 505098 13460464 ~ 13465416 (+)

Expression


Co-expression Network