pde12 (pde12,LOC107682749,LOC107680466)


Basic Information

Item Value
gene id pde12
gene name pde12,LOC107682749,LOC107680466
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12715876 ~ 12719865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251739.1
AATCGTTCCGATCGCGTAGGTCACCGGATGTTTGTCTACTCCGCGCACATGTTGAACCGGCTGTCATTCTCAACTATATTATTTTCCCGTTACATCCCCCCTTCTTCGGTCCTAACCCACAGAAGCCTCTCCAGCTCCCGGTTTAGCACGAATATGGAGAGATGCGTGGTGAGGTGCGTGCCGCGCGAGTCCAAACTGACCATCTCGTTCAGTCTAAACGGCAGCAATAAACAGATGCTGAGAGAGCAGGCGGAGCCGCTGGGCAAAGCCTTGGCTCGAATAGCCAACAGCATCGTCAAGGGACAAAACAAAGCGAAAAAATCCAAGCCgaacaaagaaaaaagctgCGCTCCTGCAGACGCGGAAAAGGCAGAGATCGCCCTGCGCGTGAACGACGCGCCCGTTCCGGAGGACACCGTGAACGCGGACGCGTGGCTGGACGGAGCCGTGCTGCATGTCGGGGACTTTAAGTATAAAGTAGAGCTGAATCCTCCCACATTCACGGTGTGCGAGCTCCCAACCTCTATAATGGCTGGGTTCCCGGTGTGTCCCAAGCTGGAGATGGAGTTTGGAGATCTGAGGGACTCCGAGTTCAGGTGGTTCAAGGAGAGCTCTCCTAACGCGCTTGTGAGTGGAGATGGAGACTGCTGGAAGGAGGCTGGACGCGGACGCGTGTTCACGCCGTCCAACCTGGACATCGGTCTGAGGGTGATGCTCGATTGCACGCCTGGGAACGGATCCAGGTTGGGAGAACCTAAGAAACTGGTCTCCTCGGGCCCGGTGGAAGCCGGTCCAGGAACGTGCACCTTCGATAACAGGCACATGTACACTCAGAAGGTCACCGACGGGTCCTCGCTGAGGGTCGTGTCCTACAACATCCTGGCCGACATCTACGCTCAAACCGATCTTTCCAAAACGGTCCTGTACCCTTACTGCGCGCCGTACGCTTTGGAGATGGACTACAGGCAGAATCTGATCAAGAAGGAGCTGTCCGGGTACAACGCCGACATCGTTTGCCTCCAGGAGGTGGATAAAGTGGCTTTCGCTGATAGTTTGTCTCCTGCCTTGGATGCGTTTGGGTTGGATGGGGTTTTTCGGATCAAGGAGAAGCAGCATGAAGGTCTGGCCACGTATTTCAGGAGGTCTAAGCTGAAGATGCTCGGGAGGTACGATATTATGCTGAGCGAGGCTTTGGCGACGGATGCTCTTCATCGGGAGCTGCTGGAGAAAGTGTCCGGCAATCCCAGCTTGAAGGAGAAGATTGAAAGCAGGTCAACGATGCTGCAGGTGACCGTCTTGCAGTCGTTGTGTGACCCGTCGAGGATAATATGCGTGGGAAACACACACCTGTACTGGCACCCTAAAGGAGGAAACGTTCGACTGGTTCAGATAGCAGTGGCCCTCCGACACATGAAGCAGGTGGTGTCGGAAAAGCATCCCGGAGCCGGGCTCATATTCTCGGGTGATTTCAACAGCACGCCCTCGTCCGGTCTCTTCCAGCTCGTCTGTGAGGGGTCGGTCTCGGAGGATCACGAGGACTGGGGCTCCGGTGGGCCCGAGGAGCGGATCCGGGCGGGACTGATGAACCCGTTCCGGCTGGTCAGCGCTTGTGGAGCCCCGGCTTTCACCAACTACGTCGGAGGCTTCCAGGGGTGTCTGGACTACGTGTTTGTGGAGCCGCATGCTCTGCGGGTGGAGCAGGTGATCCCTCTGCCCGGCCTTCAGGAGGTCACGACCTGCGTGGCGCTGCCGAGCGTCTCGCACCCGTCCGATCACATCGCGCTGGTCTGTGACCTCGAGTGGAAGTGAAACCATCGCGAACAGTGTGCGTTCCGGCAACGGCGCTTTCGACGGTTTTAGCTTCTCAGCGATGGGGTGTAGCGATAAGTCCATCGCGGTTCTCTCCGAAATCGATTCTGAGCTTGGTTTTAACGGCTGGCTTTTGGTTCCTGGCGCGCGCCacttaaacctaaaataatcattcataaagtTCTCGAATGACAGGTGGATCGTGTTTGCGTTAATCTCTTGttataaaagcatttaaccGCTCAGTCATTCATGAGCACTTAAAAACTAGCCTAGAACGCCATCTGCTGTTGAAAACTAAGTTTAGAATCGATTAGGAAATCGATTAATCGATTTAACCCTGCTGATTACagcattgtttatatttatcacACAGCTTCATTctcatttgtacaaattaatatttatgatgaGTTATTGtgtgatgtttatatatactGAAGCAAGATGTATTTGCAGTATGTGACTTTAAattcatttagcattttgtgatttttgctTTAACCATGCCTTTCAAACGCTTTAGGAATAGTTCCTTTACGATATGTCTGTTCGTCAGATTTGGAGAAGATGCAAACTCGCTCGCCaaggcagtgaatgggtgccgccaggaGTCTGAACAGCcgataaaaacacagtaatccACAGCGGTGGTGTCTCGTGAAGccaaaagctgtgtgtttcaaacaaatccatcattaatgCACAAGaaatttaaaccattgcttACAGCTAAAATGAgcccatgaaaaaaaaaaaaaaaaaaaaaaaaatcgatctCCTGTTGTCTTTCAGAACCGGTTTgattgtaaacagtgcttgatttTTTGCGTatttctcctgattcagactcCGCTGGAGGAAGCGTCGTGGATTATCGCCTCGTTTTAGCTGTAAGCAACGGCTTAAATTTCAAGTGCATCGACGGATTTGTTTTAATCGTGCAGGTCCACGAGACattcactgatggactggagtgctgtggattagcgacgtttttatcagctcttcagactctcattttgacggcacccattcaccgcagagcatccattggtgagaTTTGCAATGCTACGTTTGTCCAAATCTGAAGAAACCAAATCACCTaaatcttggatggcctgagggtgagtgcaTCTTCAGTTTTAAGCAATGTTAATcgcacaaaatatatttttaaagcattaaa

Function

symbol description
pde12 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in mitochondrion. Orthologous to human PDE12 (phosphodiesterase 12).

NR:

description
2',5'-phosphodiesterase 12

GO: NA

KEGG:

id description
K19612 PDE12; 2',5'-phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251739.1 True 2998 mRNA 0.51 3 12715876 12719865

Neighbor

gene id symbol gene type direction distance location
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding upstream 945 12702307 ~ 12714931 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding upstream 103346 12609912 ~ 12612530 (+)
LOC122353873 NA coding upstream 113036 12601083 ~ 12602840 (+)
eml6 eml6,LOC107597181,LOC107680471 coding upstream 192457 12472719 ~ 12523419 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding upstream 249433 12375113 ~ 12466443 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding downstream 12889 12732754 ~ 12737640 (+)
LOC122353835 flnb,LOC107680511,LOC107657976,LOC107712990 coding downstream 105065 12824930 ~ 13158870 (+)
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding downstream 207465 12927330 ~ 12955366 (+)
LOC122353891 slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 coding downstream 314772 13034637 ~ 13055876 (+)
LOC122353677 LOC107747780 coding downstream 440277 13160142 ~ 13161913 (+)
G81378 asb14,LOC107680484,LOC107579398 non-coding upstream 24878 12689147 ~ 12690998 (+)
G81254 NA non-coding upstream 102225 12612585 ~ 12613651 (+)
G81266 LOC107712996,LOC107657949,LOC107557396 non-coding upstream 121773 12579907 ~ 12594103 (+)
G81261 NA non-coding upstream 144086 12571323 ~ 12571790 (+)
G81255 NA non-coding upstream 191559 12523853 ~ 12524317 (+)
G81393 LOC107557402 non-coding downstream 5929 12725794 ~ 12727235 (+)
G81420 NA non-coding downstream 146114 12865979 ~ 12924171 (+)
G81421 NA non-coding downstream 167545 12887410 ~ 12889883 (+)
G81422 NA non-coding downstream 170101 12889966 ~ 12896107 (+)
G81424 LOC107680494,LOC107574810 non-coding downstream 245906 12965771 ~ 12976155 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 14992 12669789 ~ 12700884 (+)
G81268 NA other upstream 130235 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 180450 12531326 ~ 12535426 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 490384 12192754 ~ 12225492 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 847353 11860659 ~ 11868523 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 48342 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 155648 12875513 ~ 12879313 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 444896 13164761 ~ 13210690 (+)
G81434 NA other downstream 509078 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 654156 13374021 ~ 13383843 (+)

Expression


Co-expression Network