LOC122353874 (ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258)


Basic Information

Item Value
gene id LOC122353874
gene name ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12162078 ~ 12166342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251765.1
ATATCCGGGAGATTTGAATATCCGGTGGGCGGGGCGGTGTGTTGGAGTAGTGGATTTGATCCCGGTTGACAGAATTATGTTTTAACCGTTTATACGCGCGAATAGAGTCGGAGGCTGCTCACGGATCTAACTCGAGTCtagttcttcttcttcttcttcttcttcttctggaaCACTAAAGTCATGGCAGCCAGTAAGAGCAAAAGCCAGAGTTCTCTGGTCCTTCACAAGGTGATCATGGTGGGCAGCGGCGGCGTGGGAAAATCAGCTCTCACACTGCAGTTCATGTATGACGAGTTTGTGGAGGACTACGAACCCACCAAAGCCGACAGTTACCGGAAGAAGGTGGTGCTGGATGGAGAGGAGGTGCAGATTGATATTTTGGATACGGCGGGGCAGGAAGACTACGCCGCCATCAGGGACAACTACTTCCGCAGCGGAGAGGGTTTCCTTCTGGTGTTCTCCATCACGGAGCCCGAGTCCTTCAGCGCCTCGTCAGAGTTCAGAGAGCAGATCCTGAGAGTGAAAGCGGAGGAGGATAAAATCCCTCTGTTACTGGTGGGGAATAAGTCCGATTTGGAGGACAGGAGGCAGGTGTCTGCGGACGAGGCCCGGACCAAAGCGGACGAGTGGTCTGTGCAGTACGTGGAGACATCGGCCAAAACCAGAGCCAACGTCGATAAGGTCTTCTTTGACCTGATGAGGGAGGTGCGCGCGAAGAAGATGTCCGAGAACAAGGAGAAGAACGGGAAGAAGAGCGGCAAGACGAAGAACAGCCTGAAAAAGAGATGCGCGCTGCTTTGAGCCGcaaagaaacaaaccaaaaaaaaagctttcctgTCCTGGACTGAGCCGAGTTTTTCTTGCCAAATGCAATCGAAGCAGAACCTTAAGCCACTGTGCCGATGTCTAGCACATCTCTAAAGGACTTTTTATACACTTCCACCCGTTTCCCGTGATATCAGATCAGTAGCGAAACTCTAATCTGTGAACAATACATGCTTTATTACTTTCATGGAGCCGCATCACTGGGCTTCATTCATTAAACAGTACTCTATTTTATCcgccttttactttttttaaagcaaaggcAACAGAGATATGCaatatttggtttgttttgaatGCACGTGTGACGCGGCGGTGAGGTCGACGGATTTTACTACGCAAACTCGCCGAACGTGTCGCTTTTATTATCAAACTGAACATACGATATTTTTGTAATCAAACCACTTTATCTGCCTGGTGACTCTAGACCAAATAAACCTTCTTCGGATTTGTTATGAAA
>XM_043251766.1
GCGATGGCGTCATATCCGGGAGATTTGAATATCCGGTGGGCGGGGCGGTGTGTTGGAGTAGTGGATTTGATCCCGGTTGACAGAATTATGTTTTAACCGTTTATACGCGCGAATAGAGTCGGAGGCTGCTCACGGATCTAACTCGAGTCATGGCAGCCAGTAAGAGCAAAAGCCAGAGTTCTCTGGTCCTTCACAAGGTGATCATGGTGGGCAGCGGCGGCGTGGGAAAATCAGCTCTCACACTGCAGTTCATGTATGACGAGTTTGTGGAGGACTACGAACCCACCAAAGCCGACAGTTACCGGAAGAAGGTGGTGCTGGATGGAGAGGAGGTGCAGATTGATATTTTGGATACGGCGGGGCAGGAAGACTACGCCGCCATCAGGGACAACTACTTCCGCAGCGGAGAGGGTTTCCTTCTGGTGTTCTCCATCACGGAGCCCGAGTCCTTCAGCGCCTCGTCAGAGTTCAGAGAGCAGATCCTGAGAGTGAAAGCGGAGGAGGATAAAATCCCTCTGTTACTGGTGGGGAATAAGTCCGATTTGGAGGACAGGAGGCAGGTGTCTGCGGACGAGGCCCGGACCAAAGCGGACGAGTGGTCTGTGCAGTACGTGGAGACATCGGCCAAAACCAGAGCCAACGTCGATAAGGTCTTCTTTGACCTGATGAGGGAGGTGCGCGCGAAGAAGATGTCCGAGAACAAGGAGAAGAACGGGAAGAAGAGCGGCAAGACGAAGAACAGCCTGAAAAAGAGATGCGCGCTGCTTTGAGCCGcaaagaaacaaaccaaaaaaaaagctttcctgTCCTGGACTGAGCCGAGTTTTTCTTGCCAAATGCAATCGAAGCAGAACCTTAAGCCACTGTGCCGATGTCTAGCACATCTCTAAAGGACTTTTTATACACTTCCACCCGTTTCCCGTGATATCAGATCAGTAGCGAAACTCTAATCTGTGAACAATACATGCTTTATTACTTTCATGGAGCCGCATCACTGGGCTTCATTCATTAAACAGTACTCTATTTTATCcgccttttactttttttaaagcaaaggcAACAGAGATATGCaatatttggtttgttttgaatGCACGTGTGACGCGGCGGTGAGGTCGACGGATTTTACTACGCAAACTCGCCGAACGTGTCGCTTTTATTATCAAACTGAACATACGATATTTTTGTAATCAAACCACTTTATCTGCCTGGTGACTCTAGACCAAATAAACCTTCTTCGGATTTGTTATGAAA

Function

symbol description
ralba Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).
ralbb Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).

NR:

description
PREDICTED: ras-related protein Ral-B-like

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07834 RALA; Ras-related protein Ral-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251765.1 True 1288 mRNA 0.48 5 12162089 12166342
XM_043251766.1 False 1254 mRNA 0.49 5 12162078 12166342

Neighbor

gene id symbol gene type direction distance location
LOC122353838 LOC108444238,LOC108271228 coding upstream 207007 11893348 ~ 11955071 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding upstream 278648 11870425 ~ 11883430 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding upstream 350372 11795535 ~ 11811706 (+)
si:ch1073-365p7.2 NA coding upstream 367981 11782659 ~ 11794097 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding upstream 446727 11706108 ~ 11715351 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding downstream 181313 12347655 ~ 12364409 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding downstream 208771 12375113 ~ 12466443 (+)
eml6 eml6,LOC107597181,LOC107680471 coding downstream 306377 12472719 ~ 12523419 (+)
LOC122353873 NA coding downstream 434741 12601083 ~ 12602840 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding downstream 443570 12609912 ~ 12612530 (+)
G80887 NA non-coding upstream 347347 11773618 ~ 11814731 (+)
G80889 NA non-coding upstream 386956 11774726 ~ 11775122 (+)
G80847 NA non-coding upstream 396024 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding upstream 397138 11761357 ~ 11764940 (+)
G80865 NA non-coding upstream 467625 11690440 ~ 11694453 (+)
G81234 NA non-coding downstream 68850 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 71476 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 72128 12238470 ~ 12239245 (+)
G81240 NA non-coding downstream 73189 12239531 ~ 12239751 (+)
G81241 NA non-coding downstream 73791 12240133 ~ 12240391 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 293555 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 304759 11827878 ~ 11857319 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 461864 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 489121 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 626964 11528719 ~ 11535114 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 26412 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 364984 12531326 ~ 12535426 (+)
G81268 NA other downstream 416573 12582915 ~ 12585641 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other downstream 503447 12669789 ~ 12700884 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 601865 12768207 ~ 13057220 (+)

Expression


Co-expression Network