arf4a (arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973)


Basic Information

Item Value
gene id arf4a
gene name arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12719916 ~ 12724608 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251768.1
GTGATGTGGCACCGCTGACGTCATTTCGACCGCGTTGGAGCAGGAGCGCAGGAGCAGTCTCTCAGACCGCGCTCAAAACACACTTCCCAGCGGACGGAGAGCAGAAAGAGAGGCAGAAAGCAGACGAGAGACGAGCCACCGCGAGTCTGCCGGTGTGAGCCGGAGCCGGAGCGCGTCGATCTTCCCCGGAGCTCGGTCTGAAGCCGCGGTGCTAAAGCGCTAGCGGCGGCTGCTCTCGGTTTACCGCGCGAGAAgtttgactctctctctctctctcgtcttcTGAGGcgtttttttggcttttaaaaCATGGGCCTGACCATTTCGAGCGTCTTTTCTCGCTTGTTTGGGAAGAAGCAGATGAGGATCCTCATGGTGGGTCTGGATGCTGCGGGGAAAACCACAATCCTCTACAAACTCAAACTGGGAGAAATAGTCACAACGATTCCAACTATAGGTTTCAACGTGGAGACGGTGGAGTACAAGAACATCTGCTTCACCGTGTGGGACGTGGGTGGCCAGGACAAGATCAGGCCTCTTTGGAGACACTACTTCCAGAACACCCAGGGTCTGATCTTCGTCGTGGACAGTAACGATCGGGAGCGAGCGCAGGAAGCGGCAGAAGAGCTTCAGAAGATGCTTCAGGAGGATGAGCTGAGAGACGCCGTTCTTCTGGTTTTTGCCAATAAACAAGATCTGCCGAACGCCATGCCCATCAGTGAGATGACCGACAAACTCGGCCTGCAAGCGCTCAGGAGCAGAACTTGGTATGTCCAGGCGACCTGTGCGACTCAAGGGACAGGTTTATACGAGGGATTAGACTGGCTTTCCGAGCAGCTCTCCAAAGGCTAGACCTCACTTCCTGTCCAAGCAGGATGCGTGCCGTTCCAAAGGACATGATTAGCGGAGTTGATGCAGCACAGAAGCTGTTCATCTATCATTTTCAGTTGATCGATACCAAAAAAATCCAGCCGCTGCTGATCAATCTACAGCATTAGACATAAGTGTGttcctttgttttttaattcattgcACCTTCAACCCCGACTGACATTTCTCCCAGATTCATTCCGCTTGATGTGCGTAGCCTTGTAGTCTTCTGTAGATCTGACCACGGTGTGAGAAATACTAGATTTGTTAAGAAGCTCTTGCAGTACTTCTGGGTTCTTGTTAATGCAAGCATCGCGTTAACTTTTTGCGTATTtataaaagtgctttatttttgttccctCAACTCGATTTATTCCATTGCTTTCGTTCCGAACAGCTCGTTTTCAGACATTTGCATGCCATACATCCCGGAAAATGTTCTCCgaaaagcatgcatttaataaaaagattattCTTGTAGTAGCTCACTTGGAGACTGGCAGTGCATTAATGCAAGCATTAGATTTAATGCTTCTAAAGAGTTTATATTGGGAACTAGTTAAAAGTTTGTGTTGTAAATAATCAGCCTTTTTATGTAATCACAGTTGCCTTAAACGTGCTGTGCTTTACTATGTGAATGCACTTTTGATTAAGCATTGCATTTGAGAACCAACCAGCGCAAATGTTCAAGTCATGACTGTTTTTATTcccagctttttaaaatatttagatggACCGGTGCTAGGAATCGTTGAGCTGTTCCCttcctaaaaatgtattaaagcgTAATGAATAAAGAGTGAAGCAAATAAAAGTCTGAAATGCA

Function

symbol description
arf4a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in blood. Orthologous to human ARF4 (ADP ribosylation factor 4).

NR:

description
PREDICTED: ADP-ribosylation factor 5-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251768.1 True 1696 mRNA 0.47 6 12719916 12724608

Neighbor

gene id symbol gene type direction distance location
rps23 rps23,rs23,LOC107680479,LOC106566095 coding downstream 18262 12700227 ~ 12701654 (-)
asb14a asb14,LOC107680484 coding downstream 24186 12685223 ~ 12695730 (-)
appl1 appl1,LOC107712995 coding downstream 35029 12671167 ~ 12684887 (-)
il17rd il17rd,LOC107680557,LOC107597177,LOC107657971,LOC107557418 coding downstream 60232 12612824 ~ 12659684 (-)
zgc:194981 NA coding downstream 110184 12607236 ~ 12609732 (-)
LOC122353878 zgc:110286,LOC107597171,LOC107747504,LOC107712992,LOC107597172,LOC107557402,LOC107747513 coding upstream 1166 12725774 ~ 12728048 (-)
LOC122353875 arf4b,LOC107597172,LOC107557402,LOC107747513,LOC107680530,LOC107712993,LOC107657960 coding upstream 4723 12729331 ~ 12732117 (-)
LOC122353868 NA coding upstream 13392 12738000 ~ 12744145 (-)
dennd6aa dennd6a,LOC107680547,LOC107657973,LOC107597203,LOC107712949 coding upstream 22498 12747106 ~ 12766666 (-)
slc29a1b slc29a1b,LOC107712971,LOC107741993,LOC107552398,LOC107680494,LOC107557422 coding upstream 242968 12967576 ~ 12981840 (-)
LOC122353897 NA non-coding downstream 3942 12710406 ~ 12715974 (-)
G81353 NA non-coding downstream 144803 12574863 ~ 12575113 (-)
G81350 NA non-coding downstream 151607 12568109 ~ 12568309 (-)
G81349 NA non-coding downstream 184490 12534950 ~ 12535426 (-)
G81327 NA non-coding downstream 196332 12483243 ~ 12523584 (-)
G81514 NA non-coding upstream 143070 12867678 ~ 12870246 (-)
G81522 NA non-coding upstream 164320 12888928 ~ 12890216 (-)
G81524 NA non-coding upstream 169331 12893939 ~ 12895846 (-)
G81528 NA non-coding upstream 241188 12965796 ~ 12998617 (-)
G81540 NA non-coding upstream 322963 13047571 ~ 13048150 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 52328 12663831 ~ 12667588 (-)
G81318 NA other downstream 272629 12445860 ~ 12447287 (-)
G81192 NA other downstream 645841 12073596 ~ 12074075 (-)
ero1b ero1b other downstream 939107 11766831 ~ 11780809 (-)
strn strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087 other downstream 1088229 11536500 ~ 11631687 (-)
G81512 NA other upstream 93145 12817753 ~ 13057881 (-)
G81523 NA other upstream 165673 12890281 ~ 12896130 (-)
LOC122353859 NA other upstream 232253 12956861 ~ 12965633 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other upstream 259765 12984373 ~ 12989957 (-)
ccl25b LOC107680477 other upstream 625328 13349936 ~ 13394008 (-)

Expression


Co-expression Network