dennd6aa (dennd6a,LOC107680547,LOC107657973,LOC107597203,LOC107712949)


Basic Information

Item Value
gene id dennd6aa
gene name dennd6a,LOC107680547,LOC107657973,LOC107597203,LOC107712949
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12747106 ~ 12766666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251781.1
AAAGCCCCGCCCCTTTCGCTCTGgacgtgtttgtatttacagcTCAAGTTCTTCCAGCTTTCGCCAATAAACCGAGTCCGATCGCTCCTGGACCGAACGGAGGGTATCACCATGGCCTTTCAGGGGTCCGAGGGAGTGGAGGAACAGATCGAGGAGCCGGAAGACGCTCTGAGAGTTTCTCCGGCGGAGGAGATGCCCGTCGACGGGCCTCCAGCGGTAGAGGAGCCGTTACTGCTGCCGTGGGACCGCTTCTCCTCCTGGCTCCACTGCATCTGTGTGGTCGGCTTCGACCTGGAGCTCGGGCAAGCTGTGGAGGTGATTTACCCACACCACTCCAAACTCACTGAAAAAGAGAAAACAAGTATATGCTATCTGTCGTTCCCAGACTCCAATTCAGGTTGTCTCGGGGACACGCAGTTCTGCTTCCGTTTCCGGCAGGCCGCGGGCAGGAAGTCGTCACTCGGATGTTTCCTGGACCACTTCGACCGGGATGCTCCGGTTTGTCTCAAGAGGGATCAGGGCTATTACTACGGGTATGTGTACTTCAGACAGGTGCGAGACAAGTCGCTCAAAAGAGGATACTTCCAGAAGTCTCTGGTCCTCATCAGCAAGCTTCCCTACGTGACCTTTTTCCACTCTCTGCTGAAGCTCATCGCCCCAGAATACTTTGAGAAACAGGAGCCGTGTTTAGAGGCCGCATGTAATGACATTGACCGCTGGCCCACGCCGTGTCAAGGGAAGATCCTCACGCTCCCCATCATGGGTGTGGTCATGAAGCTGCGCATCCCCACGTGTTACGACAAGCCTGGAACGTCTCAGCTCGTCCAGTCCGCTCCGAGCGACAGCCTGGTGTCCATCGTTCTGCCCACTGTCCACGAAGTGGATCTCTTCAgGTGTTTCCATCCAGTGTTTTTCCACATTCAGATGTTATGGGAGCTTGTGTTGCTCGGTGAAGCGCTGGTGGTCATGGCTCCTTCACCAGCGGAGTCTTCGGACACGGTGTTGGCGTTGGTCAGCTGTATCTCTCCTCTGCGCTACTGCAGTGATTTCCGGCCGTACTTCACCATTCATGACAGTGAGTTTAAGGAATACACCACTCGAACGCAAGCTCCGCCTTCGGTCATCCTGGGAGTTACGAACCCATTTTTTGCCAAAACTCTCCAGCACTGGCCTCACATCATCCGCATCGGAGACATGAAGCAAGCAGgagagATGGCCAAACAAATGAAAGTGAAGAAACTAAAAAATCTGAAGACTTTGGACTCAAAACCTGGTGTCTATACCGCATATAAACCCTTCCTGAACAAAGACGAGGACATTATCAAGCAGCTGCAGAAGGGAGTCCAGCAGAAGCGCCCTTCGGCGGCCCAGAATGCAATTCTACGTCGATACTTCCTGGAACTTACGCAGAGTTTCATCATTCCACTGGAGCGTTACGTGGCCAGTCTGATGCCTTTACAGAAGAGTATCTCTCCTGGAAAGTAAGGCGGTCCCCCGCAGCTGCGGCCGTTCAACCAGGAGGAGTTCATGAAAACCCTGGAAAAAGCCGGACCTCAGCTCACCTCACGACTCAAAGGAGACTGGATCGGCCTCTACAGGCAGTTCCTGAGGTCTCCGAACTTCGACGGCTGGTTCAGGAACCGCAGGAAGGAGATGACGCAGAAGCTGGAAGCTCTTCATCTGGAGGCGCTGTGCGAGGAAGACCTGCAGCTGAGGGTCCAGAAACACACGGAGGTGGAGACGGTCGACCTGGTGCTCAAACTCAAGGAGAAACTGACTCAGGCCGAGAAAGATCAGCTTCCTGTCAAAGCAGGAACTCTTCCCAAACTGCAGGCCCACATCGAGAGCATCATCCGGTCTCTTCCCGAGGACCTGCAGGGCATCCTACACAAACCGCCGAGCCCCTGACCCTCGGCCGGCGCTGCCCGGAGAGGACGGGGTTGACCTCACACGCGCGCCCCCTCGAACGCTGGCTAACAGGAAGTGACTGCGGCCCGAGCGGCGCGGACGGGGGCGGAGCCAGGCACACTCTCAGTCTTTATGCTGTACGTCTCACCGTGTGAGATTAACATTCCCTtcgctttttttaaacatgaagaTGCTGTCGGGGACGGAGAGAGCCGGTCTGACACGAGAACTGAAATCCAGGGAACGTCCCCAGGTTGTGTTTCACCCCGAAATGAAGAACGTATATTGAAGCCTGgtatatatttacacagttGCATTGTTTTTGCTATAATCTGGTCGTTTCACGtgaataattatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatatgaatgcTCTCATTATTGGATCAtttgacatatatataaaaaaaaaaaaagcagaattactgaaataatgattatataaatataaatatattttgtcaatgTAATTTGTTGCATTATAGGTAATTATTaggtattttaatttaatgaatagtattcaaatttaataatttttttggcattttttacattgtgctATTTGCATAATTAAACGCGTCTCCTAAGTTATTACCAATATGCaacaaatctattttttttgcattacagaatGACTCCTTATTTCacatatttcaatataatattatttcatgagctgttttgcttttttttttttttttttccccttatgcTATGATGTAATAATGAGAACTGGCACGGATGAGACGTTTTCCGTTGGcgaatcattttttttagttatcgTGGAAAATGTCAACTCGCAATAGCTCGTGAACACGAACCGTTACATCCGTTGTATTTTGGGGGCGAAACGTTCCCCGGAGAACTTATTGCAATAACCGGCGAGACCCTGCTCACCTAGTACTGACGAGGAAGAGACGCTAGCGTGAACGTGTTTCGTCGCGACGAGCTCGAGAAGCACATTGCTGATTAACTCTCGTAACGAAGGCCCAGAAAAGACCAGCGccgttttatttatatgcatgtatttatttttattttaactgactAAACCACAAAAGGGAAACAGCCATCGCCCTTTCCTTTCCACCTTCACTAGAAAGAGCTAGTTTAGTCGCTTTATCGCCACCGTACACTTAAACACGAGATCTAGTCTTCAGATACGCGCGCTTGAGCTGTAGAGGAGAAAGGGGTCTCTTTTCGGTTCCTCGTGCCTTTTTGTTTCCCCCCGATTACTTGCATTCGATTATCTTTGCTGTTTTTAGGCCCAGGCCCACTCTTTAACGTCACCTGGCGCGTTTTAAACGATTGTTTGAGCTCGTTGCACTTTATCCGAGGCGTCTCTGGTCAAAATGTGCTCACGAAAGCCCGTTGTTTTCGTGGCTGTTCCACGACGTGAACGCATTGTGGATATTTAGAGACGGAAACGCGAGCTTCCTGTCGGTGCCTTGAGCTTGAAAGACGAACCGGGGAAGGACCGAAGACCGCCGGCCGTCTGATCCACGCCAATGCTTTACTGTACGCCTCGCGGATGTAGTTTCCTCCGTACCTCGTGAAAACTGGTTGTTGGGCAACCACCGGCGTTTTATATTTGAAGAACAAACCTATTTTAACATGCTTGAATTTTATAGAGGTATATTCTAATACGCGGATAGCTTTCGACGCGACGCCTGTTTGTTATACTGATGGATATTTTCTAACATCTGTATTTTCGATCGCTCGTTTATATCGGTAGTTACTGTACAGGACGCTTCATTTGTTGCCGTGGTGATCATCATTGAGCGACACGAATGGAAAAGATGTTTCGGCATAAACGATATTTTTCTATCAAAGCGTTGACCACtaatgttttggggttttttcctGTAACCATACTAAGCTTTTCAATggaaattataatatttgattGTTCTGTGACCATCTTGAAGAACAAGGagcctatatttttttttcccaggtgTAAATAAATGTCGATAATGGAGCGtaaa

Function

symbol description
dennd6a Enables guanyl-nucleotide exchange factor activity. Involved in positive regulation of cell-cell adhesion mediated by cadherin. Located in recycling endosome.

NR:

description
PREDICTED: protein DENND6A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251781.1 True 3965 mRNA 0.47 20 12747106 12766666

Neighbor

gene id symbol gene type direction distance location
LOC122353868 NA coding downstream 2961 12738000 ~ 12744145 (-)
LOC122353875 arf4b,LOC107597172,LOC107557402,LOC107747513,LOC107680530,LOC107712993,LOC107657960 coding downstream 14989 12729331 ~ 12732117 (-)
LOC122353878 zgc:110286,LOC107597171,LOC107747504,LOC107712992,LOC107597172,LOC107557402,LOC107747513 coding downstream 19058 12725774 ~ 12728048 (-)
arf4a arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973 coding downstream 22498 12719916 ~ 12724608 (-)
rps23 rps23,rs23,LOC107680479,LOC106566095 coding downstream 45452 12700227 ~ 12701654 (-)
slc29a1b slc29a1b,LOC107712971,LOC107741993,LOC107552398,LOC107680494,LOC107557422 coding upstream 200910 12967576 ~ 12981840 (-)
LOC122353867 sult6b1,LOC107680496,LOC107552400,LOC107744587,LOC107713000,LOC107557424,LOC107657965 coding upstream 228581 12995247 ~ 13000126 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107680536,LOC107553529,LOC107757934 coding upstream 460979 13227645 ~ 13231143 (-)
abhd8b abhd8b,abhd8,LOC107747334,LOC107578087,LOC107680465 coding upstream 489971 13256637 ~ 13261242 (-)
dda1 dda1,LOC107685208,LOC105913185 coding upstream 494718 13261384 ~ 13264933 (-)
LOC122353897 NA non-coding downstream 31132 12710406 ~ 12715974 (-)
G81353 NA non-coding downstream 171993 12574863 ~ 12575113 (-)
G81350 NA non-coding downstream 178797 12568109 ~ 12568309 (-)
G81349 NA non-coding downstream 211680 12534950 ~ 12535426 (-)
G81330 eml6,LOC107680471,LOC107597181,LOC107747670,LOC107712954 non-coding downstream 253165 12493104 ~ 12493941 (-)
G81514 NA non-coding upstream 101012 12867678 ~ 12870246 (-)
G81522 NA non-coding upstream 122262 12888928 ~ 12890216 (-)
G81524 NA non-coding upstream 127273 12893939 ~ 12895846 (-)
G81528 NA non-coding upstream 199130 12965796 ~ 12998617 (-)
G81540 NA non-coding upstream 280905 13047571 ~ 13048150 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 79518 12663831 ~ 12667588 (-)
G81318 NA other downstream 299819 12445860 ~ 12447287 (-)
G81192 NA other downstream 673031 12073596 ~ 12074075 (-)
ero1b ero1b other downstream 966297 11766831 ~ 11780809 (-)
strn strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087 other downstream 1115419 11536500 ~ 11631687 (-)
G81512 NA other upstream 51087 12817753 ~ 13057881 (-)
G81523 NA other upstream 123615 12890281 ~ 12896130 (-)
LOC122353859 NA other upstream 190195 12956861 ~ 12965633 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other upstream 217707 12984373 ~ 12989957 (-)
ccl25b LOC107680477 other upstream 583270 13349936 ~ 13394008 (-)

Expression


Co-expression Network