LOC122353891 (slmapa,slmap,LOC107680512,LOC107657974,LOC107557391)


Basic Information

Item Value
gene id LOC122353891
gene name slmapa,slmap,LOC107680512,LOC107657974,LOC107557391
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13034637 ~ 13055876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251782.1
CAGTTTAGACCACTTTCTTTTAAAGAGTGGAGGAGACTGCACTTTAATCCAACAGTACATTGAGTGTCAATcgGTGAGGCAGCTGAAGGAAGCGGTGGACTCATCCATTAACAAGCTGTCCAACTTTGACGAAGTCATTGATGCACATCTTCAGAATAACCAGACGACCGTGGACAACAGCTTGCCCAGTCCAGACAGGCTTAAAGAAAACCAAATAGACGCTAAAGAGTGTGATATGTCAGATACTCTGAGCCCCAGCAAGGACAAAAGCAGTGACGACACGTCAGacggacagatggatgaaCAAGAACTGAATGAGCCCCAGAACAGGGTTTCTCTTCTGAAAGaaATGGACAGGAACCTGGAAGCTGGAGACACTGAGCAGGTCATTCCCCACCTCCACCGAGAGCTGCAGGAGGCCCAGGAGCTCGCCAACACCGGCAAACAGAAATGCCTCGAGCTGCAAGAATGCGCCCtgctggaggaggagaggagaacCAACAGACAGCAGACTGAAGAATCTGCTAAACAGATCCGCTTCTTACAGACTCAACTGGCGAAGCTCCAGTCTGATATGGAGGCTTTGCGCGTGCAGAGAGAAAACACCATCACCACCACCCGTGAGGAGCTCTACAACGCCCAGGAGGAGATCCTGGTGCTCCGGCACGCCATGGAGGCCGCCACCGCGGAGCGGGAGCGAGAGATCGCCGCCCTGCAGGGAGACCTGAGCGTCGTCACCGCCGAACTGGACAAGTGGAGACAGACGGCAGCCAAGTATGAAGTGGAGATCAGCAACCTGCAGGCCAGCTTCCAGCTCCAGAGCCAGCACCAGGAAAGAGCTAGTCGGCTCCAAGGTGAATTGGAGAAGCTTCAGGGCGAGTGCTCCAGTCTGCAGAATGAGTGTGACGGTCTGCGGGCCGAGAAGACGACGCTGAAGCAGAAGCTCCACAGACTAGAGGAAGAGCTCGACAGCTCCAGAGAGAGAAGCGCGACGTTGAGCAGCAACCTGAACGCTTTGGAGAAATCCCAGGGCGACCTGGAGAATAAACTGGGCTCAATACAAGACCAGCACCTGCAGGATGCTAGCAAGCTGAAGATCCAGCTGGCTCAAGCCGAAGGTCGCACCAGAGACCTGCAGAAAGAGTACGACGACACTCAGAACCTGCTGTCAGATCTGCGTCAGAGGTATGAGCAGACGGAGCAGGAGAAACGCTCCATCAACGACGAGCTTGAACAGTGCAAGGTCAACCTCAAACTCCTGCAGGAGAAGGGCAGCAATCCATCCATATTGCAGCCTGTCCAAGCCATTTTCATCGGTCTATTCCTGGCTTTGCTGTATTGGTGCTTCGGCCAGTTGTGGTAGAAAGAGCGGATGGATGCCCTGGATGCCGGTGGTCGCCGCCGTGGTTGCCGTGACAGCAGTGGTGCTT

Function

symbol description
slmapa Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within muscle contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLMAP (sarcolemma associated protein).
slmap Involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in smooth endoplasmic reticulum. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: sarcolemmal membrane-associated protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251782.1 True 1430 mRNA 0.55 14 13034637 13055876

Neighbor

gene id symbol gene type direction distance location
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding upstream 79271 12927330 ~ 12955366 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding upstream 296997 12732754 ~ 12737640 (+)
pde12 pde12,LOC107682749,LOC107680466 coding upstream 314772 12715876 ~ 12719865 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding upstream 319706 12702307 ~ 12714931 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding upstream 422107 12609912 ~ 12612530 (+)
LOC122353677 LOC107747780 coding downstream 104266 13160142 ~ 13161913 (+)
ctdspl3 ctdspl3,LOC107747402,LOC107680535,LOC107553546,LOC107597167 coding downstream 158432 13214308 ~ 13220680 (+)
ndufs7 ndufs7,LOC107597168,LOC107680537,LOC107747413,LOC107685366,LOC107553547 coding downstream 165963 13221839 ~ 13226883 (+)
dazap1 dazap1,LOC107680526,LOC107757952,LOC107747374,LOC107685225 coding downstream 177889 13233765 ~ 13252149 (+)
rps15 rps15,rig,LOC107685215,LOC107578086 coding downstream 197475 13253351 ~ 13255161 (+)
LOC122353896 NA non-coding upstream 15502 12977589 ~ 13019135 (+)
G81424 LOC107680494,LOC107574810 non-coding upstream 58482 12965771 ~ 12976155 (+)
G81420 NA non-coding upstream 110466 12865979 ~ 12924171 (+)
G81422 NA non-coding upstream 138530 12889966 ~ 12896107 (+)
G81421 NA non-coding upstream 144754 12887410 ~ 12889883 (+)
G81427 NA non-coding downstream 91882 13147758 ~ 13228578 (+)
G81448 NA non-coding downstream 254445 13310321 ~ 13312912 (+)
G81454 NA non-coding downstream 258686 13314562 ~ 13315699 (+)
G81458 NA non-coding downstream 294058 13349934 ~ 13393135 (+)
G81468 LOC107747585,LOC107680549,LOC107597153,LOC107757943 non-coding downstream 350802 13406678 ~ 13651018 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other upstream 155324 12875513 ~ 12879313 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 333753 12669789 ~ 12700884 (+)
G81268 NA other upstream 448996 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 499211 12531326 ~ 12535426 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 809145 12192754 ~ 12225492 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 108885 13164761 ~ 13210690 (+)
G81434 NA other downstream 173067 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 318145 13374021 ~ 13383843 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other downstream 346411 13402287 ~ 13410126 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other downstream 404588 13460464 ~ 13465416 (+)

Expression


Co-expression Network