slc6a1b (slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564)


Basic Information

Item Value
gene id slc6a1b
gene name slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 767288 ~ 775904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251793.1
GGATAGCTGTTCGCTTCACTTGACTTCATGGAAACGTTTCGCACGGGTTTGGACGAGTAAAACTCCGAGTGTCAGATTTGGAGAGGAACCAACGGATACGCGCCGCCACGACCAAACTGGCAGGAAAACTGTTTCAGTGTCAGTGTCGAGCTTCTTTGGCGTTTTTTGACTCTAGTCGTGGGTTAACCGAACCGCGAAGCTGCTGTCTACGTGGACCGGTGCTGAACTCTCCCGTCCGTCAGCCAGGACCAAACCCAGAGACATGGCCACGAACGGCACGAAGGCATCCGATGGACACGTTTTAACAGAGCTGAACGAAGCGCCCACCGCCAATGACAAACCAAAAACTCTGGTGGTTAAAGTTCAGAAGAAAAAGGAACTTCCCGACAGAGAAACGTGGCAGGGAAAATTTGACTTTCTTCTGTCTTGTGTTGGCTATGCCATTGGACTTGGCAATGTCTGGAGATTTCCCTATCTTTGTGGAAAAAACGGAGGAGGGGCGTTCTTGATTCCTTACTTTTTGACCCTCATATTTGCTGGGGTCCCGTTGTTTCTTCTGGAAACGTCCCTCGGTCAGTACACGTCCATTGGTGGTCTTGGAGTGTGGAAACTGGCCCCTATGTTCAAAGGTGTTGGCCTGGCAGCAGCAGTCCTGTCCTTCTGGCTCAACATTTACTACATAGTCATAATCGCTTGGGCAATCTACTATCTGTATAACTCATTCACCACAGAGCTCCCCTGGAAGTCTTGTGACAACCCTTGGAATACAGACAAATGTTTCTCAAACTACAGCATGGCAAACTCCGCCAATATGACGAGCGCCGTCGTGGAGTTCTGGGAACGTAACATGCATCAACTGACTGACGGTTTGGAAAAGCCGGGAGAGATAAGGCTGCCACTAGCAATAACACTGGCCATCGCCTGGGTCCTGGTCTATTTTTGTATCTGGAAGGGCGTAGGCTGGACTGGAAAGGTGGTATATTTCTCAGCGACGTACCCGTACTTCATGCTGTTTATTCTGTTCATCCGTGGAGTGACGCTGCCTGGAGCCAAAGAGGGCATTTTGTTCTATGTCACGCCTGAGTTCAGCAAGCTGAAAGAATCAGAGGTGTGGCTTGACGCAGCCACTCAGATCTTCTTCTCTTACGGTCTGGGCCTGGGCTCTCTGATCGCCCTCGGGAGCTACAACCCTTTCAACAATAACGTTTACAAAGATTCTATCATCGTCTGCTGCATCAATTCCTTCACCAGTATGTTCGCTGGATTCGTCATTTTCTCTATCGTAGGTTTCATGGCCCACATCACACAGCGGCCCATAGCAGACGTGGCTGCATCAGGGCCAGGACTGGCGTTCTTAGCCTACCCAGAGGCGGTCACTCAGCTGCCCATCTCACCGCTCTGGGCAATCCTGTTCTTCTCCATGCTGCTTATGCTTGGCATTGACAGTCAGTTCTGTACGGTGGAGGGATTCATCACAGCTCTCGTCGACGAGTTCCCCCGCTTGCTACGAGGAAGACGAGAGATCTTTATCGCTGTTGTCTGCCTCGTGTCTTATGTGATTGGCCTGTCGAACATCACACAGGGTGGCCTCTATGTGTTCAAACTGTTTGACTACTATTCTGCCAGCGGAATGTGTCTGCTGTTCCTGGTGTTCTTCGAATGCATCTCCATATCCTGGTTCTACGGTGTCAATAAATTCTATGGCAATATCGAGGAGATGATTGGATACAAGCCCTGCATTTGGTGGAAGCTGTGCTGGGTCGTATTCACCCCTCTGATTGTGGCGGGCGTGTTCCTCTTCAGCGCCGTTCAGATGGTTCCTCTTACCATGAACAATTACGTGTTCCCAAAGTGGGGGCAAGGTGTGGGTTGGTGCATGGCCTTGTCGTCCATGGTTCTTATCCCGGGATACATGGGCTACATGTTCCTCACCCTGAAGGGCTCATATAAAGAGCGCCTTCGGATAATGACTCAGCCCACGACGGTGGTTCGGCCTCAAGAGAACGGGCCAGAACAGCAGCCTGAAAACCCCGCTCCAGCCAATGACGAGGCCTACATCTAACCGCCCTCCCCTTGCTTCACCCCGGATGATCAAAGGTCAACGTtcagagagagaataaaagagtAATCACGGTTGATCACAACCAAGGACTTCCATGTCTAGAGTATATTCACCTACCTCCGAGGGAAAACCAACCTGATTACAGTTTGAATTGTTTTGGTACATATATACATAGGGTCCAAAAAATCTATCCAGCGATGTTCTAGGGTTAATCTATATTTCATATGCAAGATATTAgtctttctaaaaaaagaaaaagaagaagaaagggtGTTACCAGAGGATATGATTTAAGTGATAATTCAAGATTTGGCATCCCAATGTTTCAACACCACCGTGTTAATTTGATATTACatgtaattaatgtattaaaaatacagttgtagGTTAGAATTGAATTGTATCTGATtgtatctgaaaaaaaaatatatatatatatatatatatacatacatacatacatatacacatttataaaactatataaaagcaGGGAGCGAGAATATGGGAGCGTGCAACAGGGCAAGATCAACCTTGTATGTCAAGGTTACGTAGCCAGGCGACACTATTCAAGACTCGAACCGTTTCAAACAGCCCTTCTCCCGTTTAGCCCTCGGGCAAACCCTGAAAAGCACAAGACCAGTATGGATTTGGTTTACATACGTCCCAGGCAGTGATGAATTACCAGCCGCGGGGGCCAATTGAcgtcaaaaaaaaagactgttactatttttttcctttttttattttctaagacaaaataactttgtatgtgttttttagAATCATTTTAGTACATGTTTTCTATGTAAGAGTAAGAAGGACCAAATTCGTGTTTATGCTACTGACAGATCTTCAAAACTGTTTTACGTCGCACCGTATCACTGCACAGGGTTCGAAAAGTCATTTTTGGGGGCAGACGTACCCCGTGAAACCACTGTTAATCCTGCTCACCACATTTGCATGCCACTCCTCAGGAAAAAATGGCGAAAGTGACCAAAATTTGCTCTCCTGGATCAAAAACGATTATAGCTGTGAGCAGCCTTCAGCAAATAATCACTTCTGAGCAGAAGCTATAGTCTGTTGCCATGGTTTCTAGGGTCATTTTGTCAGACATCGTTGACAAACCAGCACTCTGTgtcaaaaaaaacctgacagaGCCGTTGTTCGAATGAAAATATGTCAAGGAGAAATGATgctgttttctctttaaatctaCAGACTAGTTGggcaataaataatttacatggAATCATATAAAgggatatatatgtgtgtgtgtgtgtgtgtgcgtgcgtgtgggTGCGCGTGTGCGCGTGAGACGGAGAGAAACGACTGTTTTATTtccactgttttattttaaaatgccactGGTGAAAAGCACAGAGCTTTAAGCTGACAAGCCACAAAGGAATCTGAAAAAGAGCACTGTTAGTTTGCTTCTGCGGCAGCTACATGTGACAGAGATCTGGATTAATTAGTCGATTTATTCTCTGCAAGACGTCTGATGAAAAAATGTGCAATCAATAAGAGTTTTTCGTGAAATTGTATAAAATTCATCAGATTTCTCTCTGAAACAATGTTGTAAAACTGTACCGTGTAAAAGTACCTGTGAATGTCCGTTTTGAGGTTTTTGTCTTGTTGATGAACCTTATATTATTTGCTGTTTACTGCAATAATGCATCGATCTCAGAAACTATATAAAGCACATAtctttctgaaatgtaaaaaaagaatagtaataataacaaatgaataacAACGACGGAAGATTATAAGAGAATAGATAATATGTCTAgtcaaagaaaatattgttttgtatatttctaaCTGTTTGGgcctaatgtaaaatattgatatgtaaaaaaaatatatatatataataaatgtctttagaTGGTGTTATATAAAAGCATGACTGCCATGTgttatctgatttaaaaaaaaataaagtactaTAGATTATAAA

Function

symbol description
slc6a1b Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within neurotransmitter transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and cell surface. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human SLC6A1 (solute carrier family 6 member 1).
slc6a1 Enables gamma-aminobutyric acid:sodium symporter activity and sodium:chloride symporter activity. Involved in gamma-aminobutyric acid import; inorganic ion transmembrane transport; and response to inorganic substance. Is active in plasma membrane. Biomarker of temporal lobe epilepsy.

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251793.1 True 4031 mRNA 0.44 15 767288 775904

Neighbor

gene id symbol gene type direction distance location
slc6a11b slc6a11,LOC107750026,LOC107561801,LOC107697565 coding upstream 25996 721810 ~ 741292 (+)
dusp7 dusp7,LOC107697567,LOC107677944,LOC107712495 coding upstream 260649 497894 ~ 506639 (+)
poc1a poc1a,LOC108424582,LOC107747840 coding upstream 273587 456952 ~ 493701 (+)
LOC122354000 NA coding upstream 311216 453562 ~ 456072 (+)
alas1 alas1 coding upstream 318774 442953 ~ 448514 (+)
hrh1 hrh1,LOC107697554,LOC107750035,LOC107570335,LOC107576492 coding downstream 65728 841632 ~ 845908 (+)
syn2b syn2,syn2b,LOC107758022,LOC107742035,LOC107667867 coding downstream 166887 942791 ~ 1001714 (+)
pparg pparg,LOC107571218,LOC107742034,LOC107667870 coding downstream 227339 1003243 ~ 1029217 (+)
mkrn2 mkrn2,LOC107742032,LOC107675967,LOC107571211,LOC107571213 coding downstream 270446 1046350 ~ 1053868 (+)
isy1 isy1,LOC107700632,LOC108431508,LOC108254962,LOC102298134,LOC101070566 coding downstream 301635 1077539 ~ 1083253 (+)
G78089 NA non-coding upstream 342210 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 358884 405735 ~ 408404 (+)
G78047 NA non-coding upstream 361815 402445 ~ 405473 (+)
LOC122353670 NA non-coding upstream 362318 403452 ~ 404970 (+)
LOC122354311 NA non-coding upstream 393649 367803 ~ 373639 (+)
LOC122353680 NA non-coding downstream 295170 1071074 ~ 1074580 (+)
G78370 NA non-coding downstream 419320 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 441320 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 500611 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 646829 1422733 ~ 1425764 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 57798 603138 ~ 709490 (+)
iars1 iars,LOC107697556 other upstream 167917 586415 ~ 599371 (+)
G78084 NA other upstream 354535 412039 ~ 412753 (+)
G78083 NA other upstream 356604 409333 ~ 410684 (+)
LOC122354326 LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133 other upstream 416846 348517 ~ 350442 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other downstream 72271 848175 ~ 913799 (+)
tsen2 tsen2 other downstream 258505 1034409 ~ 1040239 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other downstream 298803 1074707 ~ 1077399 (+)
LOC122353696 LOC107670931,LOC107551313 other downstream 410962 1186866 ~ 1191721 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 643616 1419520 ~ 1448960 (+)

Expression


Co-expression Network