LOC122353911 (zgc:162969,LOC107680475,LOC107747135,LOC107597149,LOC107757941)


Basic Information

Item Value
gene id LOC122353911
gene name zgc:162969,LOC107680475,LOC107747135,LOC107597149,LOC107757941
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13601397 ~ 13604076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251817.1
CGCATGTAGCCTGTTTATTTATACTATAGtttgtatgtataaaatgtgttttaaaaagctaaaagattaaaaaaataataattaatttatgctTCGGAGCATGCACGACGTCGCCCAGTAGACCTCGTTTTCGGTGGTGACGTAAAGACGtataaatcagtattttaaaaagcatcacCTGTCTCCAGGTGATGTGTGGCGCTATTCGGGGGAACGTCAGCATGTCCTCACCCGGTTTTACTGACATCTTTCATTGCGAAGACACTCAGCAGTCAAAGGGGCCGCTCTCATACATTGATGATGGGCTAAACGATAGTTTGGATGGgagTTCAACTGAGCTGACTGATGTCTTCGAGGAGGATTTCTGTGAGGGTGATCTCTGGATTCCTCCCAATGATGATTTGACGCACAAAATTGCTGCCCAGCTGGAGAACTACCTTTCTGACCAGAATCTGGCAGATGATGCTTTTCTCCTCAAACATGTTCAAAGAAACAAGATGGGTTACGTCAGTTTAAAGCTGCTGACGTCTTTCAAGAAGATTAAGGATCTGACGCGTGACTGGCGCACCACGCTTGCGGCTGCAAGAAGGTCTCCGCAGCTGGAAGTGAACGAGATGGCGACCAAAGTGCGGCGAAGGACCCCGGTACCCGACTGGCTCCTGTGCATTCCCACGAGCAAGCTGCTTCTGGCCTGGAACTTCCTAGACGGCGCAGGGCCGGTCAAAGACGAGGTAAACGGCTCGCCGGGCGTGGAGCAGCTAGGCATCATGGAAGCCGCGATGCGCGTGTTCTCTCCCTACGGCACCATCTCATCTCTCCGCATCCTGCGGCCGGGAAAAGAGATCCCTACGGAGTTGAAGCGCTACACTAAGAAGCACCTGGAGCTGGGGCGTAAAGCGTGTGCTGTGGTGGAGTACGAGTATCTGGAGGGCGCGCGCAGGGCCTACGAAGCCCTGAAGGCGGAAGAGCAGCAGCAGGGAGGAAGGGGCGTCTGCGTGGTCCTGCTGGGAAGCCGCGGCACCCGTAAGCCGGGATGGAGTCAGGGTCTAGCGGAGGAAGAGTCCGAAGAAGGCGTCGACGGCGAGAGTTCGAAAAAGCCGAACAGGAAGTCCAGGCGCTTCCTGTATTCTCTGGAGGATTCGGCTGTTTGCAGCTCTTCGGAGTCCGACTTCGCCCCTGCTTCGCCCCGGCCCATCCGCAGGGTCTCCCGTCCTCAAGCCCTCTACGGCAGCCCCCTCGCCGTCCCGCGAATATCGCCTTTCCGCTCGGACCCGTACAGGAATCCCCTGGGCAGTCCCGTAGGAAGCCCTCTCCTGCCTCGTAAGCTTTTTCCTTGCGGTCACGTGACCTCTCCTCTGGCCGCCCATCCGTTCAGCAGCTCGCCCGCCGGAGCTGGTTCGTACTCCTCCGGCAGACACAAGGGCTCGGGTGAGCTCTCCCAAGACGACTCGGTCTTCGCCGGCAGCCCCTGGGTCCAGAGACGCAAGCACGCCGCCCAGGTCATTCAGCCCGAGATGGGCGACTCCGCGGCACCCGTTCAGACGAGCGTCTCGGTCGTTCGCCAGCCTGTCGGCCCCGACGGGACCAGAGGCTTTCATAACTGCATCGGTCGAGGGAAGGTGCTGCTACCACACTGAAGAAGGTGCACTACAAGGTCTTTTTCCTCACTCGGTCTGTATGAGAGCGGTGCAACAGAAGTACTTTTAAAGCAACGTGATTTCCTGTTagtgaaaatggaaataatgtaaaagaaaaaaaaagtaattattgaaataaagatgaatttgTACTCTAA

Function

NR:

description
PREDICTED: la-related protein 6-like

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251817.1 True 1795 mRNA 0.55 4 13601397 13604076

Neighbor

gene id symbol gene type direction distance location
ctns LOC107680482,LOC107747199,LOC107597154,LOC107757929,LOC107685310,LOC107553535 coding upstream 200795 13396218 ~ 13400602 (+)
slc1a6 slc1a6,LOC107747749,LOC107685347,LOC107757933,LOC107553532,LOC108437295 coding upstream 236373 13348175 ~ 13365024 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding upstream 250065 13347122 ~ 13351332 (+)
nr2f6b nr2f6b,LOC107680506,LOC107747262 coding upstream 255198 13336119 ~ 13346199 (+)
ushbp1 ushbp1,LOC107747291,LOC107680560,LOC107685353 coding upstream 272275 13316580 ~ 13329122 (+)
LOC122353909 LOC107680549,LOC107597153,LOC107757943,LOC107685118 coding downstream 34876 13638952 ~ 13648690 (+)
LOC122353752 NA coding downstream 173259 13777335 ~ 13790405 (+)
pde4cb crtc1b,LOC107747102,LOC107680520,LOC107757940,LOC107665846,LOC107553556 coding downstream 187763 13791839 ~ 13844867 (+)
rab3ab rab3a,rab3ab,LOC107553558,LOC107680521,LOC107665838,LOC107597148 coding downstream 241891 13845967 ~ 13858928 (+)
klhl26 klhl26,LOC107680559,LOC107597147,LOC107747058,LOC107553559,LOC107665842 coding downstream 263370 13867446 ~ 13875508 (+)
G81470 NA non-coding upstream 143442 13457156 ~ 13457955 (+)
LOC122354466 NA non-coding upstream 187516 13410480 ~ 13413881 (+)
G81458 NA non-coding upstream 208262 13349934 ~ 13393135 (+)
G81454 NA non-coding upstream 285698 13314562 ~ 13315699 (+)
G81448 NA non-coding upstream 288485 13310321 ~ 13312912 (+)
G81479 NA non-coding downstream 6527 13610603 ~ 13612675 (+)
G81484 NA non-coding downstream 98802 13702878 ~ 13742111 (+)
G81699 NA non-coding downstream 172094 13776170 ~ 13776466 (+)
G81704 NA non-coding downstream 178420 13782496 ~ 13782762 (+)
G81708 NA non-coding downstream 181553 13785629 ~ 13785861 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other upstream 135981 13460464 ~ 13465416 (+)
ranbp3a LOC107597153,LOC107680549,LOC107757943,LOC107685118 other upstream 191271 13402287 ~ 13410126 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other upstream 217554 13374021 ~ 13383843 (+)
G81434 NA other upstream 370305 13228943 ~ 13231092 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other upstream 390707 13164761 ~ 13210690 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other downstream 97159 13701235 ~ 13704975 (+)
G81717 NA other downstream 283257 13887333 ~ 14306577 (+)
G81722 NA other downstream 417714 14021790 ~ 14030101 (+)
LOC122353763 NA other downstream 748224 14352300 ~ 14354705 (+)
ptgfr ptgfr,LOC107753832,LOC107562064,LOC107655972,LOC107665835 other downstream 861816 14465892 ~ 14468603 (+)

Expression


Co-expression Network