prkacba (prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581)


Basic Information

Item Value
gene id prkacba
gene name prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 4368425 ~ 4375388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251836.1
AAAAACTCGCTTCTAAGCctctcaaacaggaaatgactaTGACTTCTGATCTGTAAAGAAGAGCATTTGTGGTTATCAACCAGTTGAGAGTTTTCTTCAGGGTGAACCGTGCATGTGATGGCCCAGACAAAAGATCCAAACTTTGGGCAGTCAACAGGCACCAACTCTGCTCTTCATAGGCTGGACACGTTAGCTAGCCGATTTTTTCACAAATATCGAAAAGGGCACCAGGAGAAAGGACTAGAGAATGAGGGGCCACATGTGTCAGAGTATACCATCCTTTGGGATGCAACAATGAAAGAATTCTTTGCAAAAGCCAAAGAGGACTTCTCAAGAAAGTGGGACGTTCAGCCACAGAGCACATCATGTCTAGATGACTTTGACAGACTGAAAACTCTTGGCACTGGATCTTTTGGAAGAGTAATGCTAGTCAAGCACAGACAGTCAGGAAAATACTATGCGATGAAGATTCTGAACAAAGAAAAAGTGGTGAAGCTTAAACAGATAGAACACACATTAAacgagaaaaaaatattacaagcaGTGTCTTTTCCTTTCCTTGTGAAGCTGGAGTTCACTTTTAAGGATCATTCAAATTTATACATGGTCATGGAGTATATCCAAGGAGGTGAGATGTTCTCACATCTGAGACGGATTGGAAGATTCAGtGAGCAGAACGCACGGTTCTATGCTGCACAGATTGTTCTGACATTTGAATATCTTCATGCTCTAGACCTAATCTACAGAGACCTTAAACCTGAAAACTTGCTCATTGATCATCAGGGATACATCCAGGTTACAGACTTTGGCTTTGCCAAACGAGTCAAGGGCAGAACCTGGACACTGTGCGGTACACCAGAGTACCTGGCACCTGAGATCATTCTCAGCAAGGGCTACAACAAAGCTGTTGACTGGTGGTCACTGGGAGTTTTAATCTACGAAATGGTTGCTGGATATCCACCTTTCTTCGCTGATCAACCAATTCAGATCTATGAGAAAATTGTTTCTGGCAAGGCACATTATACTTCACACTTTAGTTCAGACCTGAAGGATCTTCTGCGCAATCTGCTGCAGGTGGACCTCACAAAACGCTttggcaatttaaaaaatggagTCAGCGACATCAAAAACCACAGATGGTTTGCTACAACAGACTGGATCGCGATCTATGAGAAGAAGATTGATGCTCCCATCATACCAAAGTGCAGAGGGCCTGGAGACACAAGCAACTTTGATGAGTACGACGAGGAAAACATCCGAGTGTCTGTCACagagaaatgtacaaaagaGTTTTTGGAGTTTTAGGGTTTCGGCTTTAGAAATTTACATGTCTATTTTGTCTTGTTATGCACCTTTAAAGTTGAATTCATGAACATCATGTTGCTTCATTCAAAGAGAGTTTTCAGAGATTTGAAAATTCTCAGGTGCCTTTAGCAGTGAAGTGTAGTCtacacagcattaaaaaaagatcacaTAGTATTCTGTTTGGAAACATtatatgttaattaatttatacaatggataaagcatattttttctgtgatgaaagatttttttttatttgtataacgTTACGGAAAAGCAACCTATATGTTCAGTATTAATACACACGAAATGAGTGTGTCTGTGGAATATGTGTGCCAAAGCTTTTGGTTGTTCAGACATATCAAAAgataaatgttgaaaattaagtaaaatgtcTCCTTAAACAGTAGTAGTGCAAATTATTCCTATAcgattttgttattttatctagAAAAGCTTCAAAAAGATGTCTAATCTGAGCATCTTCTACAGTTGTCCCCTTTTATGGACCatgttaatacttttattttaagagaAAGGGTATATCTGCTGTATAGATTATGATGTACAATTTTGGAACAGTTTACTTAGAcactgaataaaagaaaattatctACA
>XR_006252072.1
AAAACTCGCTTCTAAGCctctcaaacaggaaatgactaTGACTTCTGATCTGTAAAGAAGAGCATTTGTGGTTATCAACCAGTTGAGAGTTTTCTTCAGGGTGAACCGTGCATGTGATGGCCCAGACAAAAGATCCAAACTTTGGGCAGTCAACAGGCACCAACTCTGCTCTTCATAGGCTGGACACGTTAGCTAGCCGATTTTTTCACAAATATCGAAAAGGGCACCAGGAGAAAGGACTAGAGAATGAGGGGCCACATGTGTCAGAGTATACCATCCTTTGGGATGCAACAATGAAAGAATTCTTTGCAAAAGCCAAAGAGGACTTCTCAAGAAAGTGGGACGTTCAGCCACAGAGCACATCATGTCTAGATGACTTTGACAGACTGAAAACTCTTGGCACTGGATCTTTTGGAAGAGTAATGCTAGTCAAGCACAGACAGTCAGGAAAATACTATGCGATGAAGATTCTGAACAAAGAAAAAGTGGTGAAGCTTAAACAGATAGAACACACATTAAacgagaaaaaaatattacaagcaGTGTCTTTTCCTTTCCTTGTGAAGCTGGAGTTCACTTTTAAGGATCATTCAAATTTATACATGGTCATGGAGTATATCCAAGGAGGTGAGATGTTCTCACATCTGAGACGGATTGGAAGATTCAGtGAGCAGAACGCACGGTTCTATGCTGCACAGATTGTTCTGACATTTGAATATCTTCATGCTCTAGACCTAATCTACAGAGACCTTAAACCTGAAAACTTGCTCATTGATCATCAGGGATACATCCAGGTTACAGACTTTGGCTTTGCCAAACGAGTCAAGGGCAGAACCTGGACACTGTGCGGTACACCAGAGTACCTGGCACCTGAGATCATTCTCAGCAAGGGCTACAACAAAGCTGTTGACTGGTGGTCACTGGGAGTTTTAATCTACGAAATGGTTGCTGGATATCCACCTTTCTTCGCTGATCAACCAATTCAGATCTATGAGAAAATTGTTTCTGGCAAGGCACATTATACTTCACACTTTAGTTCAGACCTGAAGGATCTTCTGCGCAATCTGCTGCAGGTGGACCTCACAAAACGCTttggcaatttaaaaaatggagTCAGCGACATCAAAAACCACAGATGGTTTGCTACAACAGACTGGATCGCGATCTATGAGAAGAAGATTGATGCTCCCATCATACCAAAGTGCAGAGGGCCTGGAGACACAAGCAACTTTGATGAGTACGACGAGGAAAACATCCGAGTGTCTGTCACagagaaatgtacaaaagaGTTTTTGGAGTTTTAGGGTTTCGGCTTTAGAAATTTACATGTCTATTTTGTCTTGTTATGCACCTTTAAAGTTGAATTCATGAACATCATGTTGCTTCATTaaaattaagtaaaatgtcTCCTTAAACAGTAGTAGTGCAAATTATTCCTATAcgattttgttattttatctagAAAAGCTTCAAAAAGATGTCTAATCTGAGCATCTTCTACAGTTGTCCCCTTTTATGGACCatgttaatacttttattttaagagaAAGGGTATATCTGCTGTATAGATTATGATGTACAATTTTGGAACAGTTTACTTAGAcactgaataaaagaaaattatctACA

Function

symbol description
prkacba Predicted to enable AMP-activated protein kinase activity; ATP binding activity; and cAMP-dependent protein kinase activity. Predicted to be involved in protein kinase A signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in several structures, including brain; fin bud; hatching gland; optic cup; and retinal neural layer. Orthologous to human PRKACB (protein kinase cAMP-activated catalytic subunit beta).
prkacb Enables several functions, including ATP binding activity; cAMP-dependent protein kinase activity; and magnesium ion binding activity. Involved in protein phosphorylation. Located in centrosome.

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit beta isoform X4

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251836.1 True 1923 mRNA 0.39 10 4368425 4375388
XR_006252072.1 False 1629 transcript 0.40 11 4368426 4375388

Neighbor

gene id symbol gene type direction distance location
diras1a diras1a,diras1,LOC107592551,LOC107669021,LOC107745338,LOC108437290,LOC100707435,LOC105906138,LOC108236225 coding upstream 409196 3953003 ~ 3959229 (+)
LOC122354347 LOC107710444,LOC107658759,LOC107745343 coding upstream 447363 3920064 ~ 3921062 (+)
trnaq-cug_18 NA coding upstream 460837 3907516 ~ 3907588 (+)
LOC122354262 si:ch73-238c9.1,LOC107710444,LOC107658759,LOC107592584,LOC107745343 coding upstream 514128 3852612 ~ 3854297 (+)
reep6 reep6,LOC107698004,LOC107745351,LOC107556177,LOC107658751,LOC107710439 coding upstream 572479 3791905 ~ 3795946 (+)
dnase2b dnase2b,LOC107669013,LOC107745346 coding downstream 9760 4385148 ~ 4387841 (+)
rpf1 rpf1,LOC107745333,LOC107669022 coding downstream 12689 4388077 ~ 4392895 (+)
spata1 spata1 coding downstream 18122 4393510 ~ 4399165 (+)
rap1ab rap1a,rap1ab,rap1b,LOC107560426,LOC105901888,LOC108231658,LOC107742898,LOC108413334 coding downstream 80956 4456344 ~ 4469290 (+)
rpn2 rpn2 coding downstream 96679 4472067 ~ 4483498 (+)
G79144 NA non-coding upstream 73670 4179542 ~ 4294755 (+)
G79053 NA non-coding upstream 448996 3918837 ~ 3919429 (+)
G79051 NA non-coding upstream 481476 3882806 ~ 3886949 (+)
G79037 LOC107745340,LOC107698002,LOC107556194,LOC107710448,LOC107592552,LOC107658524 non-coding upstream 510055 3800473 ~ 3858370 (+)
G79039 NA non-coding upstream 618939 3748587 ~ 3749486 (+)
G79187 LOC107560418,LOC107560425 non-coding downstream 34726 4410114 ~ 4412128 (+)
G79188 NA non-coding downstream 37541 4412929 ~ 4413144 (+)
G79191 NA non-coding downstream 43774 4419162 ~ 4421735 (+)
LOC122354394 NA non-coding downstream 137672 4513060 ~ 4617269 (+)
LOC122354131 NA non-coding downstream 338682 4714070 ~ 4714481 (+)
adgrl2a adgrl2a,adgrl2 other upstream 215834 4060929 ~ 4152591 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other upstream 438897 3796406 ~ 3929528 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other upstream 583083 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other upstream 584390 3783964 ~ 3784035 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other upstream 977196 3386258 ~ 3391229 (+)
samd13 samd13,LOC107592550 other downstream 451 4375839 ~ 4383979 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other downstream 911051 5286439 ~ 5346832 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other downstream 2443157 6818545 ~ 6824545 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other downstream 3352399 7727787 ~ 7741441 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other downstream 3700031 8075419 ~ 8150569 (+)

Expression


Co-expression Network