ldb1b (LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630)


Basic Information

Item Value
gene id ldb1b
gene name LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11470319 ~ 11485482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251850.1
TTGACTTCCTGTTGACTGGGGAACACAGAGGGGTAGATAGTCCTCAGCCTTCCCCCATCGCTCTAACTACACCCTCCAGCCCAGAGCCTGGCCTCCAGAGATACTCCAGCAGCATGACGGAGCAGCTCCACACGCTCGGCTGTTCCTCCAAGTCGTTCAAGCTGTACTCCCCAAAGGAGCCCCCGAACGGAAGCGCTTTCCCTCCCTTCCACCCCGGCACCATGCTGGACAGAGACGTGGGCCCGACGCCCATGTATCCCCCCACATACCTGGAGCCGGGCATCGGGAGACACACACCTTATGGGAATCAGACAGACTACAGGATATTTGAACTCAATAAGCGGCTTCAGAACTGGACAGAGGAGTGTGATAATCTGTGGTGGGATGCTTTCACTACTGAATTCTTTGAGGATGACGCTATGCTCACCATCACGTTTTGTCTGGAGGACGGTCCTAAACGATACACGATCGGCCGGACGCTGATCCCTCGTTACTTCAGGAGTGTGTTTGAAGGCGGCGCCACTGAGCTCTACTACATTCTCAAGCACCCGAAAGAGTCCTTCCACAACAACTTTGTGTCTCTGGACTGTGATCAGTGTACGATGGTCACGCAGAACGGCAAACCCATGTTCacgcagGTGTGTGTGGAGGGCCGTCTGTACCTGGAGTTCATGTTCGATGACATGATGAGAATAAAGACGTGGCATTTCAGCATCCGGCAGCACAGAGAGCTGATTCCCCGCAGCATCCTGGCCATGCATGCTCAGGACCCGCAGATGTTGGATCAGCTGTCCAAAAACATCACCAGATGCGGCCTGTCGAACTCCACCCTCAACTACCTCCGAttgTGTGTGATCCTGGAGCCCATGCAGGAGCTGATGTCCAGACACAAGACGTACAGCCTGAGTCCCCGAGACTGTCTGAAGACGTGTCTGTTCCAGAAGTGGCAGAGGATGGTCGCTCCTCCAGCTGAACCGGCCAGACAGGCACCGAGCAAGCGGCGGAAGCGCAAGATGTCGGGCGGCAGCACCATGAGCGCCGGCGGAGGCTCcaataacaacagcaacagcaaGAAGAAGAGCCCAGCAAACAGCTTCCCGCTGTCCAGTCAGGTCCCAGACGTGATGGTGGTGGGCGAGCCCACGCTGATGGGCGGGGAGTTCGGGGACGAGGACGAGCGTCTGATCACGCGGCTGGAGAACACGCAGTTCGACGCGGCTAACGGCATCGACGACGAGGACAGCTTTAACAACTCGCCCGCGCTCGGAGCCAACAGCCCCTGGAACAACAAGCCTCCGTCCAGCCAGGAGGGCAAGAACGACAACCCCACCTCGCAGGCGTCTCAGTGAGGGGCGGGGCCGGGGGCGGGGCCAGGGGAGAGAGGGGTGCGGCCGACTCGTTCATCTACCTGCGGCGGCCGGTCTTCCTGTCGGAGGAGGAAGTGACCCTGAGCGCCGCGCCGCAGCAGAAGCCGTTTGCTCCACACAGGACAGTTTTTATCCACACTCCTGGTTTTGTTGGTGATTTTACAAGGAGCCTGTAGATAGTTCATATGTTTAAGTTAAGACGAAGCGGAGAGATCTGACCACGTAAAACGCCAACAAGACCAAGAAACATCCAGCTCCTGTTTCACTCACaagaaatgacattttgcatGAGGAAAATTTATACTGTTTTGTATtgaagcttgtttctgccactgaataaaaatttaaaaaaggtaattgcagCTTTTTAGCTCCCAACTTTTTCTCTcagaattgcttttttttttttcttgcattttttttatcacaattctgatttttttttttgcatgtagtTTTGACGTCTTGCAACAGCAAATTAATCACATTTCTGATCTTTTTCCTgacgcaatttttttttttaattcaatttcttttttttgcagtagtTGCATTTTTatctcaattctgactttttcgtTTACAATTCTCTcaattgatataaaaattaaatatataaatatggttatatataaactaaaatagtaAGAAACCAGTCTTTTTCCTCTCCGTTGGACTTCATTGTTTGCAACACAGTCTGAATAGTcgcaattacctttttaatttttgaatgagCTTCTCAGTTTCGTTACTGTATTGCAACgagagcgtttttttttttaaaatgtgaatccGCATCAATCGAAACCCCACCGTTCCCGTCTTGCATCACAGTAACGAGGACTTCCTGAGAAATGTCGAGCGCTGGTTTTAAAGGATGGCATTTTCTTTTCAGCAGAATGTCGTTTCTTATGTTTGGAGTAAGACGTCTCACAGCAGATTAATTTTCAGCCTCACATCTTCCTCTGATCGCCGGAGGATGTTTAATATCACATGAAGAGCGTTTCGACTCGGACGCGTTTTGGAGAATTTTATCCGTGTTTTATACCAGCCTCTATTTCcctagaatgtttttttttttttgttgttttggtttctttttcttttttttactgacgTTGAAAGCTGCAAACCAAGGAGTAACAGAACCGTGGAGGTCCTTAAAGATTTCAAGCCTCAGATTCTATTggtttgtcttatttttaaagAGAGTCGTTTAGCGTGGGCTTTGATTGATTTCTGTGTACTTGTGCTTGTATATTTAAGGTAGTAGCAGAGTTCTGTATAACTGTATTGAGATGTATTCCTCCTTAGAGTTACATAAAGCCATTCTGAtctaatgtgtaaaaaaaaaaaaaaaaaaggaaaaaaaaagaaaaacgtgaAAGATGAAAACACACCAACCTCGTCTTTTCCCctcttgattatttttttactttgcatacGACTGATGGAGTGAAATCAAGGGCACGGTCTGTTTGTTGCCTGATCGTTTCAGATTTTGATCACAGAAGACTTCAGTGTTCGTTCTCGTCGTCATCTTCTGTTCTTCACGTGTTTAAGGAGACCAACTGTGATCAGCTAGTCATGTTTCGTTAACATGTTAGTTGTTTTCTTTCACCCGCACACCCCAAACTGCTGAAACTCAGATTGTTTTCTACTCTCAGATTATTTccgttctctctctttctgaccAGCTGAATCGATCTGAACGAATTAAAGGTCTGCACTTGTAATTGAAACAAACTGGTGATCTTTTCCACCTTTAACCTTGTAGATGCCCTGTTTGATATAACtttgttttcttaatttctgcccttgattaaattaatgtatggaaccaataaaatatgaattttcacTTTAA

Function

NR:

description
PREDICTED: LIM domain-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K15617 LDB1; LIM domain-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251850.1 True 3234 mRNA 0.46 12 11470319 11485482

Neighbor

gene id symbol gene type direction distance location
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 35795 11424607 ~ 11434524 (+)
afmid afmid coding upstream 46105 11417605 ~ 11424214 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding upstream 65770 11397046 ~ 11404549 (+)
si:dkey-93h22.7 NA coding upstream 73692 11392893 ~ 11396627 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding upstream 78861 11384307 ~ 11391458 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding downstream 1034 11486516 ~ 11499922 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding downstream 26851 11512333 ~ 11523658 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 54196 11539678 ~ 11547713 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 112308 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 220626 11706108 ~ 11715351 (+)
G80668 NA non-coding upstream 18181 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 22798 11443640 ~ 11447521 (+)
G80667 LOC107567635 non-coding upstream 31593 11437907 ~ 11438726 (+)
G80784 NA non-coding upstream 142641 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 200612 11263422 ~ 11269707 (+)
G80808 NA non-coding downstream 22518 11508000 ~ 11509053 (+)
G80809 NA non-coding downstream 25992 11511474 ~ 11511894 (+)
G80814 NA non-coding downstream 64133 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 71480 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 85620 11571102 ~ 11571431 (+)
G80761 NA other upstream 243697 11222347 ~ 11226622 (+)
G80638 NA other upstream 808349 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 999132 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1930198 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 2045017 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 20171 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 39541 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 43237 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 94544 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 212842 11698324 ~ 11700214 (+)

Expression


Co-expression Network