afmid (afmid)


Basic Information

Item Value
gene id afmid
gene name afmid
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11417605 ~ 11424214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251853.1
GGAACCGTCACAGCACTTCCTCATTTGGTCTGAAAACTCTTAATAATTGACTGTGTGTCAACAACACTGGAGCTTCGGTCCGAATCAAAGGTCTCTAGTTCAGAAGAAAACACCGTCATGAGAGACTGGAGGGAAATGAGCAGAGATGAGCTGGAGACTCAGTTCTCTCCCAGCCGCTGGTCACACAGGATGTCCGCCGATGATGTCATCAGAGCCCATGTGGACGCTCTcagagcaggcaCAGAGAAAGCTCGGTCGGTCACTCAGACTTTGCTGGACGTCCCGTACGGTGATGGAGACGGAGAGAAGCTGGACGTCTATGTTCCCAGCAGCTCCAGTCCAGACGTGCCGCTGGTGATTTACTTTCACGGAGGATACTGGCAGTTCCTCAGTAAGGAGGAGTCTGGGTTTCTGGCCGTGCCATTGGTCCAGAGGGGTGTGGTGGTGGTTGCCGTGGGTTACAGCATCGCTCCTAAAGGGACTATGGATGTGATGGTGTCTGAGGTCCGGCGGAGCGTGGTGTCTGTGGTCCAGCAGTACTCTCACATCAGcgcTCTTTACCTGTGTGGTCATTCAGCAGGAGCTCACCTGGCCGCTATGGTTCTGTCCACCGACTGGACGCAGTACGGCATATCACCCCCAATCAAAGGTGCGTTCCTGGTCAGCGGGATTTACGACCTGCAGCCCATCCTGTCCACCTACGTCAACGAGCCGCTGAAGATGAGCGAGGAAGTGGCGTCGAGGAACAGCCCCAGTCACTTCCTGTCGCAGCTCAAGCTCTCGTCCGCTTCCTGTGACATCATCATCGCCGTGGCGCAGAACGACTCGGCCGAGTTTCGCAAGCAGTCGGAGGAATACTTCAGAGCTCTGGAGTCGCTCGGTCTCAACGTCTCCTTCCAAGACGTCCCCGACACGGACCACTTCAACATTATAGAGCAGCTCGTTGATGAAAACTACCACCTTACTAAGCTTCTCCTAAAGATGGTGGGAAAAAGCTGACTGTCCCattacccagaatgcactgcgcCGGAGCTGACCTGTGAGTTGAGCTCGATGGGACCTCGCTCTTTGTCCAATCAGACACTGatagtaaatgttttacagcaGCGGGGTATGTAGGGGGAAAATGACTGTAAACGTCTTTAAACGAAAGATGTGGATCACATAAAatcgtatatataaatatagcaaatattTAACATTGAAATGATTGGTTTCGATCGTTGGCCCTGATAACCCTCTCGTTTAAGCCGCACGGATCTGTTTGTTGTGGTTTATATTGAGCTGCACAGATTGGACAGACCTGTTTAAACCGGTCTTGCTCTGGTCAGACGGgtttggtttgttgttgttaaccAGTCAAACCGAAATCCACCGATTTATATGTTTTAGCAAAGAAACTGTgtggtgttttgttgtgtttttgaagcattttcAGCTCAATAAAGCGCTGATGTGAACGCA
>XM_043251854.1
GCGGAACCGTCACAGCACTTCCTCATTTGGTCTGAAAACTCTTAATAATTGACTGTGTGTCAACAACACTGGAGCTTCGGTCCGAATCAAAGGTCTCTAGTTCAGAAGAAAACACCGTCATGAGAGACTGGAGGGAAATGAGCAGAGATGAGCTGGAGACTCAGTTCTCTCCCAGCCGCTGGTCACACAGGATGTCCGCCGATGATGTCATCAGAGCCCATGTGGACGCTCTcagagcaggcaCAGAGAAAGCTCGGTCGGTCACTCAGACTTTGCTGGACGTCCCGTACGGTGATGGAGACGGAGAGAAGCTGGACGTCTATGTTCCCAGCAGCTCCAGTCCAGACGTGCCGCTGGTGATTTACTTTCACGGAGGATACTGGCAGTTCCTCAGTAAGGAGGAGTCTGGGTTTCTGGCCGTGCCATTGGTCCAGAGGGGTGTGGTGGTGGTTGCCGTGGGTTACAGCATCGCTCCTAAAGGGACTATGGATGTGATGGTGTCTGAGGTCCGGCGGAGCGTGGTGTCTGTGGTCCAGCAGTACTCTCACATCAGcgcTCTTTACCTGTGTGGTCATTCAGCAGGAGCTCACCTGGCCGCTATGGTTCTGTCCACCGACTGGACGCAGTACGGCATATCACCCCCAATCAAAGGTGCGTTCCTGGTCAGCGGGATTTACGACCTGCAGCCCATCCTGTCCACCTACGTCAACGAGCCGCTGAAGATGAGGAAGTGGCGTCGAGGAACAGCCCCAGTCACTTCCTGTCGCAGCTCAAGCTCTCGTCCGCTTCCTGTGACATCATCATCGCCGTGGCGCAGAACGACTCGGCCGAGTTTCGCAAGCAGTCGGAGGAATACTTCAGAGCTCTGGAGTCGCTCGGTCTCAACGTCTCCTTCCAAGACGTCCCCGACACGGACCACTTCAACATTATAGAGCAGCTCGTTGATGAAAACTACCACCTTACTAAGCTTCTCCTAAAGATGGTGGGAAAAAGCTGACTGTCCCattacccagaatgcactgcgcCGGAGCTGACCTGTGAGTTGAGCTCGATGGGACCTCGCTCTTTGTCCAATCAGACACTGatagtaaatgttttacagcaGCGGGGTATGTAGGGGGAAAATGACTGTAAACGTCTTTAAACGAAAGATGTGGATCACATAAAatcgtatatataaatatagcaaatattTAACATTGAAATGATTGGTTTCGATCGTTGGCCCTGATAACCCTCTCGTTTAAGCCGCACGGATCTGTTTGTTGTGGTTTATATTGAGCTGCACAGATTGGACAGACCTGTTTAAACCGGTCTTGCTCTGGTCAGACGGgtttggtttgttgttgttaaccAGTCAAACCGAAATCCACCGATTTATATGTTTTAGCAAAGAAACTGTgtggtgttttgttgtgtttttgaagcattttcAGCTCAATAAAGCGCTGATGTGAACGCA

Function

symbol description
afmid Predicted to enable hydrolase activity. Predicted to be involved in tryptophan catabolic process to kynurenine. Predicted to act upstream of or within tryptophan catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be active in cytoplasm. Orthologous to human AFMID (arylformamidase).

NR:

description
PREDICTED: kynurenine formamidase

GO:

id name namespace
GO:0034354 'de novo' NAD biosynthetic process from tryptophan biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004061 arylformamidase activity molecular_function

KEGG:

id description
K01432 AFMID; arylformamidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251853.1 True 1464 mRNA 0.51 11 11417607 11424214
XM_043251854.1 False 1462 mRNA 0.51 11 11417605 11424214

Neighbor

gene id symbol gene type direction distance location
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding upstream 13056 11397046 ~ 11404549 (+)
si:dkey-93h22.7 NA coding upstream 20978 11392893 ~ 11396627 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding upstream 26147 11384307 ~ 11391458 (+)
tmc8 LOC107713252,LOC107702016 coding upstream 33574 11375307 ~ 11384031 (+)
notum1b notum,LOC107733046,LOC108443886,LOC107564571 coding upstream 65134 11342521 ~ 11352471 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding downstream 393 11424607 ~ 11434524 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding downstream 46105 11470319 ~ 11485482 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding downstream 62302 11486516 ~ 11499922 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding downstream 88119 11512333 ~ 11523658 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 115464 11539678 ~ 11547713 (+)
G80784 NA non-coding upstream 89927 11326427 ~ 11327678 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding upstream 147898 11263422 ~ 11269707 (+)
G80766 NA non-coding upstream 157230 11258381 ~ 11260375 (+)
G80764 NA non-coding upstream 166898 11249895 ~ 11250707 (+)
G80763 NA non-coding upstream 185087 11232087 ~ 11232518 (+)
G80667 LOC107567635 non-coding downstream 13693 11437907 ~ 11438726 (+)
LOC122353945 NA non-coding downstream 19426 11443640 ~ 11447521 (+)
G80668 NA non-coding downstream 24835 11449049 ~ 11452138 (+)
G80804 NA non-coding downstream 47757 11471971 ~ 11472301 (+)
G80808 NA non-coding downstream 83786 11508000 ~ 11509053 (+)
G80761 NA other upstream 190983 11222347 ~ 11226622 (+)
G80638 NA other upstream 755635 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 946418 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1877484 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1992303 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 81439 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 100809 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 104505 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 155812 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 274110 11698324 ~ 11700214 (+)

Expression


Co-expression Network