LOC122353949 (prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370)


Basic Information

Item Value
gene id LOC122353949
gene name prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 282263 ~ 288946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251860.1
AAGCGCTGAATGGAACGTGTCCAGCAGTGCCCAGGTTGAACTTGGGAGGGAATGACTGTAAGGGTGAATGATAGATACATAAAGGAAGATGAGATCAGGGGCTCTGGAGACTAGGAAAGGGCTGGGCTGGGTGGAGCTTAGATCAACTGACCAGCTTCATCTATAAAAGCCACAGTCTCACATCCTGTTGTGACTCAGCTTTGATCAAAACTACTGGAGACAAAAAGACCAGACGAAGACGAAGATACAACTAGGCATATCCTTGAATAAAAGGTTTAAACAGCAATTAGAAGCAAAACCATGAGTCACTCTACATTTCGCACCTCTTATCACCGCACTTTCGGGACGCCTGTCTATAGCCCCGTGTCCAGTCGCATCGGGGGCCGCTACATCTCCTCCTCTGTTCCCACGCGCTCGGTAGACTTCAGGAGCCGCTCCAGTGCTCCGGCCCCCCGTCTCTCTTACGATAAAGTGGACTTCTCAGTGGCAGAGGCCATCAACCAGGAGTTCCTTACCACACGCAGCAATGAGAAAAGAGAACTGCAGGAACTCAATGACCGCTTTGCCAGCTTCATAGAGAAGGTCCGGTATTTAGAGCAGCAGAACTCAAAGCTGATTGTGGAGCTGGATCAGTACAAGGACCAGCAGCAGGGGCCATCAGGCCGCATCAATGAGCTGTGCCAGCAGGAGATGAGAGAGATGCGCAGACAGCTGGAGCTGATGGGCAAAGATCGAGACCAGATGCAGGTGGAGAGAGACAACCTGGCCGAAGATGTGGCCCTGCTCAAACAGAGGTTAAATGAGGAGATGCAGAAAAGACAGGAAGCTGAGAATAATTTGACTCTGTTTCGTAAGGATGTGGATGATGCTACACTCGCTCGACTGGAGCTGGAGAGAAAGATTGAGTCTCTGATGGACGAGATCGAGTTCCTCAAGAAGATGCATGATGAGGAGATTCAAGACGTGCAGGTGAGTGTTCAGAGTCAGCAGATGAAGATGGAGGTGATGGAGACGTCCAGCCGGCCTGATCTGACAGCGGCACTTCGAGACATCCGGGCTCAGTATGAGAGCATCGCCACCAAAAACATGCAGGAGTCCGAGGAGTGGTACAAGTCCAAGTTTGCTGACCTGACTGATTCGGCGAAGCGCAACGCTGAGGCCGTGAGGCAGGCTAAACAAGAGACCAATGACCTGAGGAGGCAAATTCAAGCCCAGAACTGCGATATCGATGCTCTCAAAAGCACTAACGAGGCTCTGCAGAGGCAGATGAGAGAAATGGAAGAGCAGTTTGCAGCAGAGGCCGGAAACTATCAAGACACCGTGTCCCGTCTGGAAGAAGAGATACGGCACCTGAAGGAGGAGATGTCACGCCACCTGCGGGAGTACCAGGATCTGCTCAACGTTAAGATGGCCCTAGATATTGAGATCGCCACCTACAGGAAACTTCTGGAGGGAGAGGAAAACCGAATTGTGGTTCCTATGATGAAAATGCCTTCAATAAGCGGACACGGCGGCGATTACGGTCAGTTTTCTGATACTGGACCTGGAAAGAAAGTCGTAATCAAGACTGTTGAGATTCGTGATGGAGAGGTGGTGAAAGAATCCACAAAGGAGAAGGGCAGAGACGAGAAAAAAGACGGCCAAGGACAAGCTGACAAAGATTAGAGAGTGCAGATAAATGAATGCTGGATGAGTTATTGTGTGTTGCAGTTTTAATGCGAGTGTAATGGCACACATGCCGTTTACGACGATGCTTGTAGTGTAGTGAATAAGCAAATGTGACTCACTGTTGTGTACAATATGGTgctattaatataatatcagCGTAACATGACAACGCCTTAACTAACAAATCAAGTATGCAGGCCTAAATAAAGTCAGTAACAAGATGCCCAAGAAACGATCACTTacagacaacaaaaacaataattcagAAGTTCATGTCAATGTAATCTTCAAATAAAAGTGAACGGAAATGGAA
>XR_006252075.1
CAAGCGCTGAATGGAACGTGTCCAGCAGTGCCCAGGTTGAACTTGGGAGGGAATGACTGTAAGGGTGAATGATAGATACATAAAGGAAGATGAGATCAGGGGCTCTGGAGACTAGGAAAGGGCTGGGCTGGGTGGAGCTTAGATCAACTGACCAGCTTCATCTATAAAAGCCACAGTCTCACATCCTGTTGTGACTCAGCTTTGATCAAAACTACTGGAGACAAAAAGACCAGACGAAGACGAAGATACAACTAGGCATATCCTTGAATAAAAGGTTTAAACAGCAATTAGAAGCAAAACCATGAGTCACTCTACATTTCGCACCTCTTATCACCGCACTTTCGGGACGCCTGTCTATAGCCCCGTGTCCAGTCGCATCGGGGGCCGCTACATCTCCTCCTCTGTTCCCACGCGCTCGGTAGACTTCAGGAGCCGCTCCAGTGCTCCGGCCCCCCGTCTCTCTTACGATAAAGTGGACTTCTCAGTGGCAGAGGCCATCAACCAGGAGTTCCTTACCACACGCAGCAATGAGAAAAGAGAACTGCAGGAACTCAATGACCGCTTTGCCAGCTTCATAGAGAAGGTCCGGTATTTAGAGCAGCAGAACTCAAAGCTGATTGTGGAGCTGGATCAGTACAAGGACCAGCAGCAGGGGCCATCAGGCCGCATCAATGAGCTGTGCCAGCAGGAGATGAGAGAGATGCGCAGACAGCTGGAGCTGATGGGCAAAGATCGAGACCAGATGCAGGTGGAGAGAGACAACCTGGCCGAAGATGTGGCCCTGCTCAAACAGAGGTTAAATGAGGAGATGCAGAAAAGACAGGAAGCTGAGAATAATTTGACTCTGTTTCGTAAGGATGTGGATGATGCTACACTCGCTCGACTGGAGCTGGAGAGAAAGATTGAGTCTCTGATGGACGAGATCGAGTTCCTCAAGAAGATGCATGATGAGGAGATTCAAGACGTGCAGGTGAGTGTTCAGAGTCAGCAGATGAAGATGGAGGTGATGGAGACGTCCAGCCGGCCTGATCTGACAGCGGCACTTCGAGACATCCGGGCTCAGTATGAGAGCATCGCCACCAAAAACATGCAGGAGTCCGAGGAGTGGTACAAGTCCAAGTTTGCTGACCTGACTGATTCGGCGAAGCGCAACGCTGAGGCCGTGAGGCAGGCTAAACAAGAGACCAATGACCTGAGGAGGCAAATTCAAGCCCAGAACTGCGATATCGATGCTCTCAAAAGCACTAACGAGGCTCTGCAGAGGCAGATGAGAGAAATGGAAGAGCAGTTTGCAGCAGAGGCCGGAAACTATCAAGACACCGTGTCCCGTCTGGAAGAAGAGATACGGCACCTGAAGGAGGAGATGTCACGCCACCTGCGGGAGTACCAGGATCTGCTCAACGTTAAGATGGCCCTAGATATTGAGATCGCCACCTACAGGAAACTTCTGGAGGGAGAGGAAAACCGATTACGGTCAGTTTTCTGATACTGGACCTGGAAAGAAAGTCGTAATCAAGACTGTTGAGATTCGTGATGGAGAGGTGGTGAAAGAATCCACAAAGGAGAAGGGCAGAGACGAGAAAAAAGACGGCCAAGGACAAGCTGACAAAGATTAGAGAGTGCAGATAAATGAATGCTGGATGAGTTATTGTGTGTTGCAGTTTTAATGCGAGTGTAATGGCACACATGCCGTTTACGACGATGCTTGTAGTGTAGTGAATAAGCAAATGTGACTCACTGTTGTGTACAATATGGTgctattaatataatatcagCGTAACATGACAACGCCTTAACTAACAAATCAAGTATGCAGGCCTAAATAAAGTCAGTAACAAGATGCCCAAGAAACGATCACTTacagacaacaaaaacaataattcagAAGTTCATGTCAATGTAATCTTCAAATAAAAGTGAACGGAAATGGAA

Function

symbol description
prph Predicted to enable structural molecule activity. Acts upstream of or within tissue regeneration. Predicted to be located in type III intermediate filament. Is expressed in nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 1. Orthologous to human PRPH (peripherin).

NR:

description
PREDICTED: plasticin

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07607 PRPH; peripherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251860.1 True 1981 mRNA 0.48 9 282263 288945
XR_006252075.1 False 1932 transcript 0.48 8 282263 288946

Neighbor

gene id symbol gene type direction distance location
LOC122353951 arfgap1 coding downstream 95412 179559 ~ 186851 (-)
LOC122353658 NA coding downstream 274473 5676 ~ 7790 (-)
LOC122353956 LOC107751587,LOC107552203,LOC107696908,LOC107714543 coding upstream 1034 289980 ~ 290350 (-)
cdk4 cdk4,LOC107747701,LOC107701179,LOC107567936,LOC106583286 coding upstream 50149 339095 ~ 346418 (-)
tegt tegt,LOC107574446,LOC107567938,LOC107684007,LOC107713865,LOC107711598,LOC107698838 coding upstream 78900 367846 ~ 372472 (-)
avil avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443 coding upstream 85214 374160 ~ 385324 (-)
si:ch1073-456m8.1 NA coding upstream 97088 386034 ~ 394186 (-)
G78150 NA non-coding downstream 9299 271740 ~ 272964 (-)
G78149 NA non-coding downstream 10906 270980 ~ 271357 (-)
G78140 NA non-coding downstream 44364 237488 ~ 237899 (-)
G78109 NA non-coding downstream 213994 67765 ~ 68269 (-)
G78106 NA non-coding downstream 217122 63074 ~ 65141 (-)
G78162 NA non-coding upstream 142048 430994 ~ 431422 (-)
G78164 NA non-coding upstream 142741 431687 ~ 438660 (-)
G78167 dusp7,LOC107561798,LOC107677944,LOC107697567,LOC107712495 non-coding upstream 169347 458293 ~ 506641 (-)
G78192 NA non-coding upstream 303669 592615 ~ 594641 (-)
LOC122353904 NA non-coding upstream 430329 719275 ~ 721631 (-)
LOC122354323 LOC107706475,LOC107589231,LOC107700775,LOC107591713,LOC107703600,LOC107722831 other downstream 1686 274866 ~ 280577 (-)
LOC122353952 cdk4,LOC107747701,LOC107567936,LOC107701179,LOC106583286 other downstream 56432 217174 ~ 225831 (-)
LOC122354324 arfgap1 other upstream 33267 322213 ~ 329039 (-)
LOC122353669 mettl21b,LOC107684011 other upstream 113994 402940 ~ 405411 (-)
G78144 alas1 other upstream 154939 443885 ~ 448901 (-)
G78170 NA other upstream 164188 453134 ~ 455998 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other upstream 310161 599107 ~ 794136 (-)

Expression


Co-expression Network