LOC122353951 (arfgap1)



Basic Information


Item Value
gene id LOC122353951
gene name arfgap1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 179559 ~ 186851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043251861.1
AATGCCGCTGTCTGCCAGCGCAGCACCGATCGATGGTCAGGCCGGTGTTTCAACGCGTTAAACGGTAGAGATCAGCCGGTGGTCGAAACGCTTGGTCTCGGTGGAAATCGTTTGAAGTGACTGTTGATGAGTGAATGAGATCCGCGTGAAGAGagaccatcatcatcatcatcatcctcctcctcctcagagcCGAAGACAAACCCAGCAGGAGCGATGGCGAGTCCCAGAACCAGACGAGTGCTGAAGGAGGTCCGGTCCGACGACGAGAACAAtgtgtgcTTCGAGTGCGGAGCGTTTAATCCTCAGTGGGTCAGTGTGACGTACGGGATCTGGATCTGTCTGGAGTGTTCGGGCAAACACAGGGGCCTCGGGGTCCATCTCAGCTTTGTGCGGTCTGTGTCGATGGACAAGTGGAAGGACCTGGAGCTGGAGAAGATGAAGGTCGGAGGAAACAGGAAGTTCCGTATGTTCCTGGAGCTGCAGGACGACTACGACCCCAGCTGGAGCCTGCAGGAGAAATACAACAGCAAAGCCGCTGCGCTCTTCAGAGACAAGGTGGTGACTCAGGCCGAAGGGAAGGAGTGGACGATGGAGAACTCTCCCGCCAGGAACTGGACTCCTCCGCAGGCCAAGAGCGGCCTGAGTGCTGCGCACCGGTCCAGTGCCGCTGCGGGTCAGAACCACACGCACTCCTCGGACAAGGCCTTCGAGGACTGGCTGAGCGACGACGTCAACTCCTACCAGAACGCCGGAGCGACCGGGGCGCAGGAGAATAGATATGTGGGGTTTGGAAACACTCCCAACCCGCCCAAGAAAGATGAGGACTTTGTGAACAACGCCATGTCCTCCATCTACTCGGGCTGGAGCAGCTTCACCGTGGGAGCCAGTAAGTTTGTGATCGCTAAAGACAGTACCACTAAACTGGCCAACCAAGCGACTCTGAAGTTACGGGGCTATAAACCACCGCCAGAGCCGGCCACCGAGCTGGGACAGACGCTGAATGACAGTGTGATCAAGCCCACACAGGAGAAGGTGAAGGAGGGAAAGTTGTTTGATGAAATGGCCGTGGGCATCAGCGGTCTGGCCACCAAGGTTCAGGGAGCAGGAGCTAAAGGCTGGAAGGACATGACCTCGTTCTTCGGTGGGAAACAGGAGGCTGCTGATGATGGTTCTGCTTACGAGGAAGGATATCAGAACCAGGGGCCCAAGCGGGACTTCTGGGAAACCTTCGGTAGTAACACGGCTCTCAGCAGCAACTCTGTAGAGCGAGGCTCAGAAGATCAGTCCAACAACAAGAATAGTGCTGCAGACAGCTGGGAGACCTGGGACAACGACTGGGAGAAGGCTGGAGACGGCAAGGACAGGAAGAGCCCGTCGAAGCCGGCCGAGGACTCTTGGGACAACAGCGGCTGGTAGAGGCTTCGAGCGTCTGCTTTCGTCGGACGTGGCCCTCCTTTCGTCTGTCCTTTTCCTTTCTGTTGAGAATGAGTCGATAAAGATCTTTCAGACGTCTGTGTCCATGACGGAGGCgtttaatattacagtataatgTTTGATATTGACACCAGCAGAGATCTGCATGTCATCTGCTGTTTGTGGTCCGTAGATCAAAAACCAGATCGCAGTGGCTTTCCTGCGTCATGACAGACTCCTGTTTGTTcatggctttttattttatatgtatgtgttcattatgtgtgtgtgtgtgtgtgtgtgtgtatacgatGAGCTGTCAAACAGATTCCTATTCAgagaaaaaatcatttttatcagCAGAGTTGTTCGTGCTTCCTGTTCTCAATATAATCAGAACGACCAAACCCATGTAGGAGCATGACGCGTGCTTCATCATCCATCACCTCATGGCCTTTTTGGACATCGCtaatgttctttttcttttgtagtcatgttttgtttgtttcttcgttCTCTAATAACTGCTTTACGTTGTTCATGTTGTCATTCCAGATGTGAAATGTGCTGTGCTTGTGCTCTTGGATTACATGAAAGAACAAAATATCTCAGAGTTCATGGTAAACACAAGACTTGGACATCaaacatcattatttattcatgtctCTCATTTATTTGGTCTTTTATTTGTGATTTCGGCTAAACGGGATGTTTCTCCTTACCTCAGTAATATGGTGGTTGTTTTCTGTATTCTTGTCGTTCACCCCGAATCCCTTTATGATGTTGAGTATTGCTGTTCTCCACACATCACGTGTTCATGAGTTGATGGACATCTGCTGCTCTGTGGATGTACCCGACTAGCACATCTCTGCTATGTATGTTTGAATAGTGACAACGCCTGCTGTGTCTGAGGAACATGGGTGAGATACACTATATTCTGTTAGTTAAATAGTATAGCTAATAAAGCTTAAGACACCACCTGAA

Function


symbol description
arfgap1 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ARFGAP1 (ADP ribosylation factor GTPase activating protein 1).

NR:

description
PREDICTED: ADP-ribosylation factor GTPase-activating protein 1 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12492 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043251861.1 True 2400 mRNA 0.50 15 179559 186851

Neighbor


gene id symbol gene type direction distance location
LOC122353658 NA coding downstream 171769 5676 ~ 7790 (-)
LOC122353956 LOC107751587,LOC107552203,LOC107696908,LOC107714543 coding upstream 103129 289980 ~ 290350 (-)
cdk4 cdk4,LOC107747701,LOC107701179,LOC107567936,LOC106583286 coding upstream 152244 339095 ~ 346418 (-)
tegt tegt,LOC107574446,LOC107567938,LOC107684007,LOC107713865,LOC107711598,LOC107698838 coding upstream 180995 367846 ~ 372472 (-)
avil avil,LOC107567939,LOC107684013,LOC107711597,LOC107698837,LOC107574443 coding upstream 187309 374160 ~ 385324 (-)
si:ch1073-456m8.1 NA coding upstream 199183 386034 ~ 394186 (-)
G78109 NA non-coding downstream 111290 67765 ~ 68269 (-)
G78106 NA non-coding downstream 114418 63074 ~ 65141 (-)
G78140 NA non-coding upstream 50637 237488 ~ 237899 (-)
G78149 NA non-coding upstream 84129 270980 ~ 271357 (-)
G78150 NA non-coding upstream 84889 271740 ~ 272964 (-)
G78162 NA non-coding upstream 244143 430994 ~ 431422 (-)
G78164 NA non-coding upstream 244836 431687 ~ 438660 (-)
LOC122353952 cdk4,LOC107747701,LOC107567936,LOC107701179,LOC106583286 other upstream 30323 217174 ~ 225831 (-)
LOC122354323 LOC107706475,LOC107589231,LOC107700775,LOC107591713,LOC107703600,LOC107722831 other upstream 88015 274866 ~ 280577 (-)
LOC122353949 prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370 other upstream 95412 282263 ~ 288946 (-)
LOC122354324 arfgap1 other upstream 135362 322213 ~ 329039 (-)
LOC122353669 mettl21b,LOC107684011 other upstream 216089 402940 ~ 405411 (-)

Expression



Co-expression Network