usp48 (usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757)


Basic Information

Item Value
gene id usp48
gene name usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8709301 ~ 8718145 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251940.1
AGTACGTACGTCTCATAGAAGTTTGAAACTGACGAAgggacaaaaatatttatataaaagctgaCGCAAGGGCGCTAAATACAAACGTACCATCAATAAAGTGTGATTTAAAATTCCTATATTTATGAAAGCATCTTCACAGTCAAGAATCTCTTGGTAAATTCACGCCAGGTGCatgtatttaatgaaaataagtcAAGAGCTAGCTGCTAGCATGCTAACTGCGCAGCTTTAGCAGCCTCGATGAAAACATTCAATATTATTGTGTTTACTAAAGATTTATAAAACAGTACAGCTGTGTTGAGCCCGTAAACCggagtatttatttttgacgAATGGCTCCTCGGTTGCAGCTGGAAAAAGCTGCTTGGCGGTGGGCAGAGACAGTTAAACCAGAGGACATCACACACGAACATATAGAGTTAGCTTATAGGATAGCAGTGACAGCGTGCAAAAGGGGGACATGCAGGAGGAACTGTAAAGGAAATCCCAACTGTCTAGTCGGTATTGGGGAACAATCATGGTTAGGAGAAATTGATGAAAATGCCTTCCACAACATCGATGACCCAAATTCTGAAAGACGAGATAAGAACACATTTGTGGGCTTGACGAATCTTGGTGCCACATGTTACGTGAACACTTTTCTCCAGGTGTGGTTCCACAATCTGGAGCTTCGTAGAGCCTTATATCGATTTCAGAATTCCAGAGCAGAAGGGCACAACACAGATTCAGATTATGAACCACGGACGATATGTGAACATCTTCAGTATCTGTTTGCTTTGCTACAGAACAGTAACAGGCAGTATATCGACCTCGGGCTGGTTAAGGCTCTTGGGCTCGACACAGGACAACAGCAGgATGCTCAGGAATTCTCCAAACTCTTCCTCTCACTTCTCGAAGACACGCTTTCAAAGCAGAAGGACCCAAATCTCCAAAATGTCATTCAGCAGCAGTTTTGTGGGCAGTTCTCTTATGTTACAGTATGCAACAAATGTGGACGTGAGTCTCCTCTACCATCACGATTTTATGAGCTGGAGTTAAACATTCAAGGGCAAAACCTCACAGAGTGTGTTACGGAGTTTCttaagGAGGAGAAGCTGGGCGGTGATAATCGCTACTATTGTGAGACCTGTCAGAGTAAACAGAACGCCACCCGTCGGATCAAGCTCCAGAGTCTTCGCACACTTAATTTTCAGCTCATGCGTTTTGTCTTTTATAGGCAAAGTGGTCATAAGAAGAAACTCAACACCTTCATTAGTTTTCCAGAAGTTCTTGACATGGGGCCATTTTTGGAAGGAAAAGaagAGAAGTGTACTTACGAGCTCAGTGCGGTGTTGATTCATCGTGGCGTGAGCGCATATTCTGGCCACTACATCGCTCATGTAAGAGACGCCCACACCAACGATTGGTACAAATTCAATGATGAGGAGATCGAGAAAATGGAGGGCAAGAAACTTCAGCTGGGAATCGAGGAAGACATCGCCGAGACTGCCAAGTCTCAAACCCGAAAGCCAAAATGTAGCAAAGGCTATCACTGTTCGAGAAGCGCATACATGTTAGTGTACAAACAGCAGACGGAAGAGATTGACCAAACAGAAACTATCGTTGAAGTACCAGTTTTTCTCCAGAAGCTGGTTGACCAGGACAACAAGAAGTTTGAGGAGTGGTGCAATGAAATGGCAGACATGCGAAAGCAGAGTGTTGACAAAGGCAAAGCCAAACATGAGGAGGTGAAGGAGCTCTAATTGTTACCTGCAGAAGACGGTCAACCGTATGAGTTTGTGCCTTTGGAGTGGCTCAAGAAATGGCTTGATGACTCCACGGCCATCAAAGAAATTGACAACAGCCAGTTCTTGTGTTCCCATGGCAAACTGCACCCAGACAACATTGGCGAGGTCAAAAGAATATCCTCGAAGGCCGCTGACCTCCTTTTTGGCCGCTATGGAGTAATATCTAGACTAGACCAGTCATCGCTCTGCAGAGACTGTGTCACTCAGCGATGTCGGGTGATCAGACTGAAAAACCAGCTGAATGAAGATTACAGAGAGGTCATGAATCTTGCCAAAGCTCCTTTAAAAAGTGATGAATCAGGTTTCTGGATTGGTAAGGCTTCTCTAAGGAGCTGGAGACAATTGGCATTAGACCAGCTAGAGGAAGACGAGGAAGAAaccaaacacaacaacaacaaaattaacGGAGAGAAAAGCAGCAGCGCAGGATCTAAAGGAGATAATGAAGAGGGCGATGGTGAAGAGATGAAAAACTTTAATGAAGACATTCTCTGCTATCACGGTGGCCTGAGTATAATAGAGAATGACAGAAGGCTGGTTTCTGCAGAGGTGTGGAACAAACTGCGGGTGTATTTCCCCAAAGCACCAGAATTCCCGCAAAATCATGAATCCTGTCAGCAGTGCATGAGGCTGGAAAGAGAAGGTAAAGAAAATGAAGCTTTGAACAGAATGATGGCAAATGAACAGAAGAGCTCCCTTCTCAACCTCTTCCAGGAGAAGAATCGGCCCACCCTGCAGAAATGGCCACAGGAAACAGATATTCTGTACATTGTACCTCATTACTTTGTAGATGAATGGAGGAAATTTATCAgGAGGCCAGCAAAGAGCAACCCAGTGTCCAACGTGGGGAACAGTATCCTGCTCTGTCCTCACGGAGGCTTCATGTTCACGTATGACTCCATGCTGCAAGGAGACGCTCAACATATAGCTCTTCTCTGGCCTGCTGAATGGGAGGTGATCAGCAGAATGTTTCTGGTGGACCAGCCCATCTCCATATGTCGGATTcatgacaaaacacaagacaatgGCAATGTGCAATACCAGACTCATCCAGATCTATGTCGGGAATGCAGAGAGGGCTTCATTTTCCAGCAGCAGAGGGACATGAGGGAGTACGCGCAGGCCACGGTGTACGTTCGGAAAGTCATTGACAAGAAAAGGATGATTAAAGAATCTGCCCCCGAGTTCAGTGTGAGTGGATCAGATGTAGAGGATGAAAGAGAAGAGCCAAAgatggatggagagaaagaTCCAGACTTCAGTCAATCTGAGGGAGGAGCCAAACGGCAGAAGTTGAATGAGACCGTCTCTCTTTCCGTGGCCTCTGTGGCCCCCGTGACCGCTGCGTCCAAGTCTGGCATCAGGAGGAGCACGAGGCACAGGAAACTCCGTGGAGAGACCCTCATCGTCTCCGCCAACCAAACACTCAAAGAGCTCAAGATCCAGATCATGCATGCATTCTCTGTGGCTCCGTTCGACCAAAACCTCTCCATAGACGGGCGCTGTTTAACAGACGACTCCGCCACACTAGGAAGCCTTGGAGTTATTCCCGAGAGCATCATTTGCCTTAAGGCTGACGAACCTATTGCTGATTATGCTGCAATGGATGATGTTTATCAAGtctgTATGCCTGAAGAAGGATTTAAAGgCACTGGACTGTTAGGACACTGAGTGGAACAATGCTGACAATGTCTGAACAAGGATAAAGCTTGAATTACACATAGATGTTCATTCTTGGgatgaaatcttttttttaattttaggttgttttttttgttcgtttgtttgttaATGAAATGTTGCAACAACTtcaaaagtgtcttttttgctttaaaacatcaTGCTGGCTTTTAATATTGAAAGATGTTGATGCATTCTGCAAGATTTTGTGGTCGTGCTTACCATGACTGTGAAAAATACGGGTCGAGATTTCCTCAAAGGACGTTCCATTTCAAGGA

Function

symbol description
usp48 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP48 (ubiquitin specific peptidase 48).

NR:

description
ubiquitin carboxyl-terminal hydrolase 48-like isoform X2

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11858 USP48; ubiquitin carboxyl-terminal hydrolase 48

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251940.1 True 3748 mRNA 0.45 35 8709301 8718145

Neighbor

gene id symbol gene type direction distance location
LOC122353989 sox13,LOC107580906,LOC107743263,LOC107582435,LOC107751191 coding upstream 71805 8616883 ~ 8637496 (+)
LOC122353978 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding upstream 107909 8592126 ~ 8601392 (+)
cacna2d3 cacna2d3,LOC107751209,LOC107582378,LOC107743247 coding upstream 223711 8440711 ~ 8485590 (+)
cacna1da cacna1da,LOC107743249 coding upstream 274082 8348650 ~ 8435219 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding upstream 407323 8294876 ~ 8301978 (+)
zbtb40 LOC107575478,LOC107659551,LOC107743242,LOC107685987,LOC107751213,LOC107582425 coding downstream 1293 8719438 ~ 8729558 (+)
psma5 psma5 coding downstream 34911 8753056 ~ 8757807 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding downstream 40640 8758785 ~ 8778563 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding downstream 60949 8779094 ~ 8786060 (+)
rrp9 rrp9,LOC107659541 coding downstream 79831 8797976 ~ 8803291 (+)
G80047 NA non-coding upstream 12041 8578811 ~ 8697260 (+)
G80042 NA non-coding upstream 46819 8555431 ~ 8662482 (+)
G80039 NA non-coding upstream 52887 8549785 ~ 8656414 (+)
G80031 NA non-coding upstream 68233 8508653 ~ 8641068 (+)
LOC122353990 NA non-coding upstream 93394 8615175 ~ 8615907 (+)
LOC122354296 NA non-coding downstream 104939 8823084 ~ 8824181 (+)
G80120 NA non-coding downstream 222939 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 269481 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 294615 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 533649 9251794 ~ 9254355 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 105017 8602187 ~ 8604284 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 426400 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 558732 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 967860 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1884756 6818545 ~ 6824545 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 100245 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 157143 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 161438 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 173305 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 704805 9422950 ~ 9425302 (+)

Expression


Co-expression Network