LOC122353989 (sox13,LOC107580906,LOC107743263,LOC107582435,LOC107751191)


Basic Information

Item Value
gene id LOC122353989
gene name sox13,LOC107580906,LOC107743263,LOC107582435,LOC107751191
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8616883 ~ 8637496 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251941.1
AGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGAGGATGAAGAGGTTGACGGACATGCTGTCATTCACTTGCCCCTGAGTtcgtactgcagcaaagtgtcCCCGCGATCTCCGCGACTGCTCGACAGCCCCCCAACACTACACGCGAACATGGATCAGGATGGCAGTAAAGGCCTGGCCCTGAGCCCCTACCCCCAGCACAACTCTTCTACCTCACCCAgtaagcagcagcagcagcagcaggaggaggGGTCCATGCGGCCGGGGAGCGAACCCAGCTCCGCTTCAGCTCTGGGCACCCCGGAGAGACGCAAGGGCAGCCTGGCCGACGTGGTCGACACGCTCAAACAGCGCAAGATGGAGGAACTCATCAAGAACGAGCCAGAGGAGGCCCCCAGTATTGAGAGGCTGTTGTCTAAGGACTGGAAGGACAAGCTATTGGCCATGGGTTCTGGTAACTTTGGAGAGATCAAAGGAACCCCAGAGAGTCTGGCAGAGAAGGAGCTTCAGTTGTTGTTGATGATCAACCAGCTCTCTGGTCTGCGAGAGCAGCTGCTAGGAGCTCATTCTGAGCAGAGGAACATGGCCGCTCTGCTGCTGGAGAAACAGCAGCAACAGATGGAACTGGCAAGGCAGCAGCAAGAACAGATCgccaaacagcagcagcagttgATACAGcagcaacataaaataaacttaCTGCAGCAGCAAATTCAGCAGGTAAACATGCCATATGTTATGATCCCTGCCTTTCATCCCAATGCCCAGCCGTTGCCAGTCACCTCTGAAGCCCAAATGGGTTTGCCTCTGCAGCCCATTCCCTGCAAACCAGTGGAGTATCCCATGCCGTTGCTGCCCAATCCACACTCCACACCAGTCAAGAGGTCCAGTGGTACAGTCTTTCGCCAGGATACCAGTCAACCTCTGAACCTCACGGCTAAACCCAAGACCCCAAGTCCGCAGGCACTGGAAATGGCCCACTTGCAGACCGGGTACCGACCCAGAGATCTGCCACATAGCCCTCCTCGAACTGCCCTCAGCCTGAGCTTCTTGGGAGAGGGTGATGTTGTGACACAAGCCATTCATGATGCCCAGCAGCTGTTGCGTGGAGGACAAGGCCCGACGGGCCGAGAGAGGGACCGTGAGAGGGACAACAACACAAGGCTGATCGTTTTTAAGGAGGCGTCTCGAGACCGGATGGATGACGGACAGTCCCTTCGGGTGAATGAGGACCACCTCAGTAGTGACTCCGAGGGGCAGATGGCAATCTCTGGTGTGGGAAGCTTTGGTGAATCCCGGACTCCCTCCTCTGGCCACATCAAACGTCCCATGAACGCCTTCATGGTGTGGGCCAAAGACGAAAGACGACGCATCCTTCAGGCGTTCCCTGATATGCACAACTCCAGTATCAGCAAGATCCTCgGGTCTCGGTGGAAGTCCATGTCCAATCAGGAGAAGCAGCCCTACTACGAAGAGCAGGCAAGACTGAGTCGGCAGCATCTGGAACGTTACCCAGACTACAAATACAAACCCCGGCCGAAGAGGACCTGCATTGTGGAGGGTAGACGACTGCGGGTCGGAGAGTACAAGGCCATGATGAAGAGTCGACGACAGGAGCAAAGAGTTACTTATCCTCAGAGCCATTCAGAGCAGCAGCTACCGTACCCCTCCAGTGAAGGACAGTACCCGACCACGCCGGTGTCCATGGCCCCACTGCCCTTGCACCCTGCCCTCCTGGAGCACTACCTTCCTCGGGGTCTGGAGCCTCCAAAAGGCCAAGGCAGCGAGATGCTTGAGGCCGCGCGGCCCCGACAGCCCTACAGCGAAGGGGAGGAGAGTGACGCGGGTGAGCGCAGTGAGGGAGAGCTGGTTGTCCTCACTGACTGAGACAGAACCGGGGAATAATCGGAGGACAGAGGGTGCAAAATGCGATGAATGAGACGGACAGTATAACTGGGAGACTTTACAATCCCTACCTACAACATGATGGTGTCCAATAAATGGTAtaggtcagtgtttttttttttctgtccagtTGTGAGGATGTCCTGGTTTCAGACACGCCAGATCAGTCACGTGCTTCTCTAGGGTTGGTTAGGAAGGCAGCAGACGTGATAAGCGGAGCACATATcttaatttttcagatttttccaGCGGTTTAGGCCAGACACCCAGAACAGGTCTCGCATAGTGACCTCCGCTTGGAAAAAGCAAGCCTCTTTCAATCTATGATATTCAATGAGACTGTAAATATCAAGTCTTTCGAAGGCATTGTGAAGCCGGCGttcaaaaattgttttaaaaaccatCAAATGTCACTGCGTTTATTATGAAGTAAATGTTATCTGCGAAGTGCATCGGCAACTGCAGATAAGCGTATTCACTGTTGGCTTATCTGAAAAAGTTCCACATTTGACACCGTGTCAAATGATTGGCAATAATAGCATTAAACGGTTCACACAGACGAAAAGAGTATGGCGagtaaactgaaaagaaaacaatgagctatttctttaaatagcGTGAAGATGCTATGAATCATTTTGCCATAGAAAATGAAAAGgttaaagaagagaaaaaaaactaaaccctCTCCGTGTTAGAACGCTTCTTGATGTCACCAGGGTTTTCCTGCAAAAGTTCCTGTTAAGACTGTGCCAAGGTACTTTCCAGAGCTCAAGGGCtgagcaaaaaaagaaaaagaaaacaagtggaCTTGGAAAAAGGAAGGAACATTCCTGAACTCCTTGTCCAGTTTATTATACCAGATAATGACGATTAGTGGCTGTTCTGTTACAGAGATTTAAGCAGCCTGCCCCTTTAAGACTCGCTAAAGGCAGCGAAGGTCGGTGGCGTCCTCTGCTGTTCGAATCTGGGTACTGCACTTAAGAGATTTCCCCAGgtcaaaatcatatttttatttcttttgatttagTGCAGAATAATCACTTGAAATGCACTTTCCCcatctaatatatattttcagatcCTCATGattcataaaacttttttttttccacagtagAATTTTGCACTTGATGTACATACGCAAATAATTTCTACAATATTCATTTTGTGAAAGGAGATGTGAATAATACCCTTGCCTCAGATTActcccatttttaaaaaatttggtttacttttatattttagtgtgtgcgcgcgtgtgtgtgtgtatagagtgattttttttttttgtgctgaagAAAATAACTGAGTTATCATTCCAGCAGTTCTTATGACCGGGTCCATATTATTGGGCTGCTAGTCAATTTACAGTTGAGctgaaatgtaaacattttgtttaaaaaaaaaaaaaaattataaacatttatattttaaagaggaGCTTTTAGGAGATATTTGCAAGTGGACTGTTAGGATAAAcctaacattttaaagaaaattatgaCTTGTATATAGCTGGACACAGAAAtacagtttgtatttttatctgtAGAATAAACCCATgcgggcaaaaaaaaaaaaaaaaa

Function

symbol description
sox13 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; forebrain neural keel; hindbrain neural plate; neural rod; and solid lens vesicle. Orthologous to human SOX13 (SRY-box transcription factor 13).

NR:

description
PREDICTED: transcription factor SOX-13 isoform X1

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251941.1 True 3542 mRNA 0.48 13 8616883 8637496

Neighbor

gene id symbol gene type direction distance location
LOC122353978 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding upstream 15491 8592126 ~ 8601392 (+)
cacna2d3 cacna2d3,LOC107751209,LOC107582378,LOC107743247 coding upstream 131293 8440711 ~ 8485590 (+)
cacna1da cacna1da,LOC107743249 coding upstream 181664 8348650 ~ 8435219 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding upstream 314905 8294876 ~ 8301978 (+)
LOC122354006 LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199 coding upstream 387297 8223356 ~ 8229586 (+)
usp48 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding downstream 71805 8709301 ~ 8718145 (+)
zbtb40 LOC107575478,LOC107659551,LOC107743242,LOC107685987,LOC107751213,LOC107582425 coding downstream 81942 8719438 ~ 8729558 (+)
psma5 psma5 coding downstream 115560 8753056 ~ 8757807 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding downstream 121289 8758785 ~ 8778563 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding downstream 141598 8779094 ~ 8786060 (+)
LOC122353990 NA non-coding upstream 976 8615175 ~ 8615907 (+)
G80032 NA non-coding upstream 100659 8510249 ~ 8516224 (+)
LOC122353642 NA non-coding upstream 128990 8486482 ~ 8487893 (+)
G79908 NA non-coding upstream 288775 8326490 ~ 8328108 (+)
G79887 LOC107743253,LOC107578868,LOC107694869 non-coding upstream 337129 8279361 ~ 8279754 (+)
LOC122354296 NA non-coding downstream 185588 8823084 ~ 8824181 (+)
G80120 NA non-coding downstream 303588 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 350130 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 375264 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 614298 9251794 ~ 9254355 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 12599 8602187 ~ 8604284 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 333982 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 466314 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 875442 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1792338 6818545 ~ 6824545 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 180894 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 237792 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 242087 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 253954 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 785454 9422950 ~ 9425302 (+)

Expression


Co-expression Network