ift52 (ift52,LOC107730620)


Basic Information

Item Value
gene id ift52
gene name ift52,LOC107730620
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1270083 ~ 1276013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251958.1
GCGCCCCTGGTAACGCTTGTGTTGTCCACTTGTACCCACAATGCATTGCGCACGGCCAAAACAATTTGCTGTCGAACCTCTGTCGTGCTCCGTCAGGATTGAGGTGATGATGTATTAAAAGTCTTAATCAGCCCGTGTGGGAGAAGAAAACGGCGACGAAAGAATATCGTGGTTTGTTAGAATAGGGACGCTAATCTGTCCCTCCATCTCTCGCCGGAGTTTGTAAACAGTGTATCTGGACCTTTATGTCAACATGGACAAAGAGCAACGAAACATCGTTGTTGTTAACGCATCCAAACGAGAGCTCTTCACCGCCGGCTCTGGATACAAGTCTATGCAGAAGAAACTAAGAGCACAGTGGAAGATACAAAGcatcaaaGAGGAGCTCACTTTGGAAAAACTCCAAGGAGTCAAGTTATGGATCACCGCAGGCCCTCGAGAAAAGTTCACTGCTGCTGAGTTGGAGGTCCTCAAGCAGTATCTGGACGGCGGCGGAGGTCTTCTCGTGATGCTCGGAGAAGGAGGAGAAATGAAGTACGACACGAATATCAACTTCCTTCTGGAAGAGTTTGGCATTATGGTCAACAATGATGCAGTTATAAGGAACGTCTACTACAAATATTTCCATCCCAAAGAAGCGCTCGTGTCCAATGGAGTTCTGAACAGAGAGATCAGCCGAGCTGCTGGTAAAGTGGTGACGGGGGTGATTGATGAGGAAAACACGGGGAACAATTCGCAGGCACTTACGTTCATATACCCTTACGGGGCCACACTAAACGTGATGAAGCCTGCGGTGGCCGTCCTGTCCACCGGATCCGTGTGCTTCCCGCTCAACAGACCCGTCCTGGCCTTCCACCAGTCTAAGAATGCCGGCAAGTTGGCCGTCCTGGGCTCCTGTCACATGTTCAGCGACCAGTACCTGGACAAGGAGGAGAATAGTAAAATAATGGATGTTGTTTTCCAGTGGCTTACCACAGACGGCATTCCTCTCAACCAGATAGACGCCGAGGACCCAGAGATCACAGACTACACCATGCTGCCCGACACAGGGAGTCTGTCCGACCGTCTGAGAGTGTGTCTGCAGGAGGGAGACGAGAACCCGCGAGACTTCACATCTCTCTTTGACATGTCTCTGCTAAAgctgcacacaaacactctccCCTCTGTCCTGGAtgcttaCAAGCAGCTGAACGTCAAACACGAACCTCTCCAGCTGATCACACCACAGTTTGAAACACCTCTGCCTCCGCTGCAGCCTGCCgtCTTTCAGCCGGCCTTCAGGGACCTTCCACCACCCATGCTTGACCTTTATGACCTCGATGAGACCTTTTCATCTGAGAAAGTGAGGCTGGCTCAGCTCTCAAATAAATGTACTGATGACGATCTGGAGTTCTATGTACGTAAATGTGGAGATATCTTAGGAGTGACGGGGAAGCTGGACAAGGGCAAAAGAGAAGCCAAGCACATACTGGAACACGTCTTCTTCCAGGTGGTGGAGTTCAAGAAAATCAATCAAGAGCACGATATTGACACGACAGAAGCAAGGTTCATGTATTGAAGCGGACGTGGAGCGCCGGAGTCGTGCAGCGAGGACTTGTTTTTGAGATCTGTGTGAACATGCACAGTATAGACTCTCAAACCACGTGTTCTTCACTTCCAGTTCACTACGAGCTTTCTCAGGCATGTGGTTTaaagaattaattacatttcttgtAGCAATgagttttctttcctttttcaaataaataaatgagctga

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

NR:

description
intraflagellar transport protein 52 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K19681 IFT52; intraflagellar transport protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251958.1 True 1758 mRNA 0.49 14 1270083 1276013

Neighbor

gene id symbol gene type direction distance location
srsf6b LOC100690823,LOC103156038,LOC101480010,LOC102289851 coding upstream 487 1264285 ~ 1269596 (+)
acot8 acot8,LOC107670930,LOC107730625,LOC107722006 coding upstream 5856 1260783 ~ 1264227 (+)
ppp1r3db LOC107730614,LOC107551316,LOC107654797,LOC107722003 coding upstream 56538 1211847 ~ 1213545 (+)
znf831 LOC107558955,LOC107730612,LOC107670927 coding upstream 90284 1168152 ~ 1179799 (+)
nuf2 nuf2,LOC107570127,LOC107550318 coding upstream 164377 1098493 ~ 1105706 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding downstream 1767 1277780 ~ 1284953 (+)
dtx3l2.2 LOC107654785 coding downstream 9097 1285110 ~ 1290204 (+)
LOC122354215 LOC107654785 coding downstream 15094 1291107 ~ 1300799 (+)
lrp1aa LOC107654787,LOC106565466 coding downstream 32660 1308673 ~ 1414799 (+)
hoxc13b NA coding downstream 260014 1536027 ~ 1538014 (+)
G78380 NA non-coding upstream 47248 1217224 ~ 1222835 (+)
G78370 NA non-coding upstream 74620 1195224 ~ 1195463 (+)
LOC122353680 NA non-coding upstream 195503 1071074 ~ 1074580 (+)
G78089 NA non-coding upstream 845005 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 861679 405735 ~ 408404 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 502 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 146720 1422733 ~ 1425764 (+)
G78467 NA non-coding downstream 193655 1469668 ~ 1471384 (+)
G78468 NA non-coding downstream 203161 1479174 ~ 1482149 (+)
G78479 NA non-coding downstream 237866 1513879 ~ 1514178 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 78362 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 192684 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 229844 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 356284 848175 ~ 913799 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 560593 603138 ~ 709490 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 143507 1419520 ~ 1448960 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 209694 1485707 ~ 1517963 (+)
G78500 NA other downstream 314731 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 368618 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 402213 1678226 ~ 1681200 (+)

Expression


Co-expression Network