LOC122354006 (LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199)


Basic Information

Item Value
gene id LOC122354006
gene name LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8223356 ~ 8229586 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251960.1
TTTCCTATTCGAAAATGGAGTTCTACCGAAGACTTTAATATAGCTTCCTTAAGATATTTCAGCTCCACTGCATTCGCTCACCAGACCCATTTCGGTTCTCGCGGGCTTTAAAGGCGGTGTGGACAACACACGATGCATCAGGCAGATCTCCGGCTGATCATTTTGGGTGCTTTTCTCATCTCAGCATCTACAGGTTCTGTGAAGAAGAAACAAAATGTGGATATATACAGCTTCTACATTAACTCCACGGTCACCAGCCGCTACGCCACAACAGTCATCACAAGCCGCGTTGCGAACAAATTGAATGAATCTCAAGAGATCCAGTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAATTCAGAATggttatagATGGGAAAACATACAATGGAGTTGTGAAGGAAAAAGAGGAAGCTCAGGAGCAATACAATCAAGCAGTATCTCGAGGACAAAGTGCTGGACTGATCAAatcaGTTGGAAGGAATTTAGAGGACTTTAAAACCTCAGTGACAGTAGCTGCTTTTAGTAAAGTGACCTTTGAGTTGACCTACGAGGAACTGTTAAAGCGTCGCCTCGGCAAATATGAGCTACTCATCAACGCCCAACCGATGCAGCCAGTGGCTGACTTCAAGATGGAAGTGCACATCCAAGAGAAGCCAGGAATCTCCTTCTTGGAGGTGAAAGGAGATTTGAGCACCGGTGATCTGGCCGATGCCATCAAAACCACCAGAGCAGACAAAGAGGCATCGGTGACATTCTATCCCTCTCAAGATCAACAAACCAAGTGTAAAAGCTGTGGAGAAGATGGGCTGAATGGAGACCTGCTTGTAACGTATGATGTCAACAGACAAAATCCTAATGGGGAAATcatggTATCAAATGGCTATTTCGTCCACTACTTTGCCCCCTCTGATGTTCAACGTATTCCAAAAAATGTGGTGTTTATCATCGACCGGAGTGGTTCTATGCATGGTAGAAAAATAGatcagACTCGTTTGGCACTGCTGAGGATTTTAAGTGATCTTGATGAGGATGACCACTTTGGATTGATCACCTTTGACAGTGAAGTTAGCTTATGGAAGCGTGAGCTCCTCAGAGCTACTGAGGAAAATCTAGAGAATGCCAAATCTTTTGTGAAGGAGATCAGAGATAGAGGAGCCACGGACATAAACGCAGCAGTTCTAGCAGGAGTGGATATGATCAGTCGACATCCACGAGAGGGAACAGCCTCCATCCTGATCCTGCTGACCGATGGAGATCCCACTTCAGgtGAAATCAACAAAGAGAAGATAATGGCCAATGTGAAAGAGGCCATTGGGACAAACTTTCCCCTCTATTGCCTTGGTTTTGGATATGATGTTAACTTTGACTTCCTGACAACGATGTCTCTGGAAAATAGTGGAGTTGCTCGCAGGATTTATGAAGATTCAGACGCTGATCTACAGCTTCAGgGCTTCTATGAAGAAGTTGCCGTCCCTCTTCTCACTGAAATTCAACTTAAATACCCAGGAGGTACAAACCTTACCAAGACCAGCTTTAGCTTGTACTTCAATGGCTCTGAGATTGTGGTGTCAGGACAAATCACAGACAACAGTGTGGAGAGTTTCACCACCGAAGTCATCGCAGTATCAAAAGGCAGCGATGTGACGTATCAAGACACTATAATGACAAAAGAGCCCAGTGATGTTCCACCTGAGGATGAAGATTTCATGCAGAGGTTGTGGGCCTACCTTACAGTGAAACAGCTTCTGGAGAGACAGGTGCTTCTTAAAGGACAGGAGAAAGAGGACGAAAAGAAAGAAGCTCTCAGACTTTCCCTGAAATATCAGTTTGTCACTCCCCTCACCTCTATGGTCGTTACTAAGCCACAGGAAGGAGACGTGGAAGTAGCTGACAAACCCAAAGagggagaaagaagaaaaatgagaGGAATGGCACTTGTACCTAAAGTTTATAATGACTATGCCTATGACTATGACCTGAGGCCTCAAGCGGACATGATGATGAGCTCTTCACCagtattttcaattattttgggGGTGGGGatctttgttatttttgtttttgtttttgtgttaggttttttttgctgGCGCCGGTCCACTCGTAGGCAGCACGTCAGCTTGCAGAGCACTTGTGATTAAGGTGTCGCAAATTCAAGTCCCGGCTACCAGACCTTAGCCGATCCTGGATTGATTTCCTTCCTTTCAGATATAGGTCATTATCCCCCACAATCATGCAAGttattcaatttatatttttttcctgtttgtttgtttgtttgttttttttttacttggttaTCCATATGTCCTTGTGGGCGACTGTCATGATAATAATTTGGTTTATTATTGGCTTTCAATGATGATTCATCATAtgtttatcatatattttaatgagcAATTGTAGTAAGCTTTTTCAGTCAAGGTGATGTAATTATTTGTATCAAGTTTACATGCATTATTACTAACAGTAATAACATGCTTTATGCATATGAATATGcagaaatgtaaacatttattgtcttaaatgtcctaaatgtatgccaaaaaaatatatgcatgtctTTGTTTTCATATTCCAGCATTATAACATTACACTAGTACgccaaatgattattttttttttttaacttttattaaatgtaatagatcttattttatttattttctgtatttttttttataagaaatgcATATCACAGTTGCTGGGGATTATGGTATTGTGGTATGTcaaaatatttatcttatttattgaTGTGAAATAGTAGTAAAGGAAAcgaataaaacagaaatcaatcac

Function

NR:

description
PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3-like isoform X2

GO: NA

KEGG:

id description
K24514 ITIH4; inter-alpha-trypsin inhibitor heavy chain H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251960.1 True 2809 mRNA 0.41 13 8223356 8229586

Neighbor

gene id symbol gene type direction distance location
erc2 erc2,LOC107694874,LOC107699320,LOC107582387 coding upstream 22087 8153932 ~ 8201269 (+)
zgc:158258 LOC107743280,LOC107694864,LOC107580189 coding upstream 176402 8042338 ~ 8046954 (+)
yod1 yod1,LOC107580473,LOC107743281,LOC107699783,LOC107582461,LOC107694882,LOC107751243 coding upstream 182730 8035867 ~ 8040626 (+)
etnk2 etnk2,LOC107694884,LOC107751192,LOC107698335,LOC107582391,LOC106565623,LOC106583121 coding upstream 232402 7979146 ~ 7990954 (+)
slc41a1 slc41a1,LOC107654373,LOC107698497,LOC107751220,LOC108254937 coding upstream 265682 7932605 ~ 7957674 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding downstream 65290 8294876 ~ 8301978 (+)
cacna1da cacna1da,LOC107743249 coding downstream 119064 8348650 ~ 8435219 (+)
cacna2d3 cacna2d3,LOC107751209,LOC107582378,LOC107743247 coding downstream 211125 8440711 ~ 8485590 (+)
LOC122353978 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding downstream 362540 8592126 ~ 8601392 (+)
LOC122353989 sox13,LOC107580906,LOC107743263,LOC107582435,LOC107751191 coding downstream 387297 8616883 ~ 8637496 (+)
G79870 NA non-coding upstream 5443 8217679 ~ 8217913 (+)
G79869 NA non-coding upstream 6945 8211670 ~ 8216411 (+)
G79868 NA non-coding upstream 11836 8210879 ~ 8211520 (+)
G79865 NA non-coding upstream 17650 8204997 ~ 8205706 (+)
G79864 NA non-coding upstream 18433 8204506 ~ 8204923 (+)
G79861 LOC107743279,LOC107694870,LOC101884647,LOC107579820 non-coding downstream 1580 8231166 ~ 8233276 (+)
G79859 NA non-coding downstream 20457 8250043 ~ 8251167 (+)
G79876 NA non-coding downstream 22590 8252176 ~ 8252704 (+)
G79851 NA non-coding downstream 29632 8259218 ~ 8259657 (+)
G79853 NA non-coding downstream 31016 8260602 ~ 8267421 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 72787 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 481915 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1398811 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 2876524 5286439 ~ 5346832 (+)
samd13 samd13,LOC107592550 other upstream 3839377 4375839 ~ 4383979 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other downstream 51229 8280815 ~ 8282901 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 372601 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 588804 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 645702 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 649997 8879583 ~ 8881656 (+)

Expression


Co-expression Network