ankrd13c (ankrd13c,LOC107693019)


Basic Information

Item Value
gene id ankrd13c
gene name ankrd13c,LOC107693019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11194251 ~ 11210291 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251981.1
GGCAGATGGCTCTTCCTCGtagggtgtgtgtgagtgtgtgtcgtTTGTTTACCGTTCGATGCGTCGCTCCGGTGCGTGTTTCATTCCCGTCCGTCTCCGTTGAGTCACCGGACAGTGTTCATGTTGTGCGGGCTGCTGTTTTCCACCGCTCATCTGTGTAAATATGACGGGAGAGAAGATCCGCTCGGTGCGCAAAGAGCGCAAAGCGGGTTTGGATCTGCTGGAACCGGACGAGGAGCCGGCGGCCACCGGGCCGATCAAAGCCAACCGGGGCGGCAAGATCCTCAGCGGCGGAAACCACAAGATCCTCCGGAACCAGAGCCACGGGGACACTGACAGCGCGTACCCCGTGCATGAGTGCGTGTTCAGGGGCGACGTGCGGAGGCTGTCATCGCTCATCCGGACGCAGAACATCGCGCAGAAAGACGTGCACGGAAACACCCCCCTTCACCTGGCTGTAATGATGGGTCATAAAGAATGTGCCCATCTCCTGCTGGCCCATAATGCACCAGTGAAGGTGAAAAACGCTCAGGGATGGAGTCCGCTCGCTGAGGCCATCAGCTACGGAGACCGACAGATGATCACTGCTCTGCTGAGGAAGCTAAAGCAGCAGTCACGAGAGAGTGTGGAGGACAAGAGACCTCGTCTGCTCAAAGCACTGAAAgagCTGGGTGACTTCTATCTGGAGCTGCACTGGGACTTCCAGAGCTGggTGCCTTTACTCTCAAGGATTCTACCCTCTGACGCCTGTAAGATCTACAAGCAGGGCATCAACATCAGgctggACACTACACTGATTGACTTCACTGATATGAAATGTCAGCGAGGAGACCTGAGCTTCATCTTCTGTGGAGACGCAGCTCCCTCCGAGTCCTTCGTGGTTCTGGACAACGAGCAGAAGGTTTATCAGCGGATTCATCATGAGgagtcAGAGATGGAGACGGAGGAGGAGGTGGACATCCTGATGAGCAGCGACATCTACTCAGCTACGCTCTCCACTAAATCCATCACCTTCTCCCGCGCTCAGACCGGCTGGCTCTTCAGAGAGGACAAGACCGAGCGAGTGGGGAACTTCCTGGCCGACTTCTACATGGTCAACGGTCTGGTTCTGGAGTCCAGGAAGAGACGAGAACATCTGAGCGAGGAGGACATCCTGAGGAACAAGGCCATCATGGAGAGCTTCAGCAAAGGAGGGAGCATCATTGAGCAGAGCTTCGAGCCGGTGAGACGTCAGTCGCTGACCGCTCCGTCACCGAACACTATCTCCTGGGAGGAGTACATCACCGCGGAGACGGGCAAGGCTCCTCATCTGGGCCGAGAGCTCGTGTGCAAAGAGAGCAAGAAGAACTTCAAAGCAACCGTAGCCATGAGTCAGGACTTTCCTCTGGGCATCGAGTCGCTGTTAAATGTTTTGGAGGTCATCGCACCCTTCAAGCACTTTAATAAACTCAGAGAATTTGTTCAGATGAAGCTTCCGCCTGGATTTCCTGTTAAACTAGACATCCCCGTTTTCCCCACCATCACTGCCACCGTGACCTTTCAGGAGTTCCGTTACGACGAGTTCGACGACTCCATTTTTACGATTCCCAGCGACTACAAAGAGGATCCCAGCCGCTTCCCGGACCTCTGAGCCGGCCCCCGTCCCGCTTCGCCCCGCCTCCATCTCCTCCATCTCCCTCCGCTCACCTCCGAGTCCAGACCCGCTGCAGATGGACGTGTGTGTAGGAAATACTCGACGTCAAACGAACACAAAGGGATCGCGCCGAGGCGAGTGTGAACGGGAAGCTGCACTACACGCCGGAGCTCCGGACCGGTACGCTAGAAAACGCGGAGCGTCGCTTCACGCCACCTCTGTAACTGGCAGGAAATACGgcattataaattattacacaAGCCGAGTTTTCATATATATCTTTGTACAACTGTTACAAACTTGTATACTTCACTTAAAAGGAAACGTGTATATTTAGGGAAGAAGCGGAAGGCGTCTGTATATGATTTGAGTTGTATGAAACCCGTCACAGAATGCCGTGTCTGTCGTTTCGACGAACTTTGTGTAAATACCACTTCCTTCTCCGGTTGGTTTGCCCGTTGCATTATGGGAAACGGGCTCGTTCACTCTGCCCTTCACTATGTGTTCGTTCGGAGCGCTTGCTTTCTCACATTCTAGTAGAGGACCGTACCGGAACCGGATGTAAATGTAGCAGGAATGGACGGGACTTTCACGTTACTTTCACCTTAATAGACGGATGTAAATACATTCAaagttaaatatgttttccGACGTAGTATAATCGACTGACGTATAACTGGTTGATGTATAACTGACGAGTATGTTTATTGAGATATTAGTGATACGGCGGAGACATCTTTCCCGAgtgttttatatgtgtgtgtttgctgtgtgcCGAGGGAAGAGGAGCTCACGTCACGTTTGCACCAGCAATATCCCGCTCAAccgtttttcttttatgtctctCGTTTCGTTTTGTCCTTATCCGAATGGAAACGTGCCGCGACGCTTCCAGGACCCACTACTGGTTAGTGTGGAAACCCATGTGTTTTGccgttttccttttttattcttGTTGTGTTGccggcttctttttttttccctcccctgTGTTTCACGTCCTTGTTTTTAGAGTTGCTTTCGGTAATTCCTCAGATTTTTCTCCCAAACGCACCGAACTCTCGGATGTACAGCAGGAACCTTGTATGAACCTGCTGCACTTTTATACGacaaattgtaattaataaaaatgtccatGTATCA

Function

symbol description
ankrd13c Predicted to enable signaling receptor binding activity. Predicted to be involved in protein retention in ER lumen. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13C (ankyrin repeat domain 13C).

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 13C

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG:

id description
K21437 ANKRD13; ankyrin repeat domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251981.1 True 2776 mRNA 0.52 13 11194251 11210291

Neighbor

gene id symbol gene type direction distance location
rfc4 rfc4 coding upstream 4417 11185451 ~ 11189834 (+)
gemin6 gemin6,LOC107682381 coding upstream 47430 11145189 ~ 11146821 (+)
LOC122353583 LOC107747909 coding upstream 113470 11056382 ~ 11080781 (+)
LOC122353580 NA coding upstream 143036 11040861 ~ 11051215 (+)
LOC122353582 NA coding upstream 152031 11038143 ~ 11042220 (+)
trappc10 trappc10,LOC107657364,LOC107572046,LOC107693011,LOC107713874,LOC102780331 coding downstream 17698 11227989 ~ 11248832 (+)
notum1b notum,LOC107733046,LOC108443886,LOC107564571 coding downstream 132230 11342521 ~ 11352471 (+)
tmc8 LOC107713252,LOC107702016 coding downstream 165016 11375307 ~ 11384031 (+)
LOC122354629 LOC107564562,LOC107713253,LOC107702029 coding downstream 174016 11384307 ~ 11391458 (+)
si:dkey-93h22.7 NA coding downstream 182602 11392893 ~ 11396627 (+)
G80746 NA non-coding upstream 11492 11182085 ~ 11182759 (+)
G80747 NA non-coding upstream 13868 11167832 ~ 11180383 (+)
G80714 sos1,LOC107571995 non-coding upstream 44878 11147228 ~ 11149373 (+)
G80729 NA non-coding upstream 69238 11112383 ~ 11125013 (+)
G80730 NA non-coding upstream 82417 11110537 ~ 11111834 (+)
G80759 NA non-coding downstream 4292 11214583 ~ 11217418 (+)
G80763 NA non-coding downstream 21796 11232087 ~ 11232518 (+)
G80764 NA non-coding downstream 39604 11249895 ~ 11250707 (+)
G80766 NA non-coding downstream 48090 11258381 ~ 11260375 (+)
G80661 mafgb,mafg,LOC107564557,LOC107702026 non-coding downstream 53131 11263422 ~ 11269707 (+)
G80638 NA other upstream 532281 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 723064 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1654130 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 1768949 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 2215010 8891450 ~ 8979241 (+)
G80761 NA other downstream 12056 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 295362 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 314732 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 318428 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 369735 11580026 ~ 11672957 (+)

Expression


Co-expression Network