pusl1


Basic Information

Item Value
gene id pusl1
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3285961 ~ 3299062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252007.1
GGTTTTATTTTCAGGCGCACACAGCACTCACATGGCTGTATTTTATGTAGATCCTGAGTGGTGTTGTGTGTCTTACATTATTATTAGGCATATACAACATATTGTATTGACTTCAGCTGGATGCATGCGTTACTGCTTTTGACAAACATTAAGCGAATAGTTCAGGAAACATGCGAAATTCTGTCACCCGCTATTTAATCTTTTTCCAGTATACAGGGACCAAATACTGTGGCGTGATGAAAATACCAGCAGATCGAGCAGTACAGGGAGTTGGGAATCATTTAGAGAGTGCAGTGGGGAAACTCAAGCCGGTGAATAAGTTTTCAGTGGTCATCTCCAGCAGAACGGACTCTGGTGTGCATGCTTTGTGTAACTCGGCACATGTGGATATCCAGCGGAGTGGAGACAAGCCCCCGCTGCCCGAGCATGTCCTGGTCGATGCCTTAAACTTCCACTTGAAAGAAGAAGCTATAAGAATCACCAGGGCTTACCGTGTCCACAGTGACTTCCACGCACGCCACAGGGCCGTCTCGCGCACATACGTATACCGCTTTGCTATGGGTCTCAGATATGCCACAGAAATGACAGTAATGGAGAACGACCTATGCTGGGCGATACAAAACAAGACTCTCGATATCAACGCAATGCAAGAGGCTGCATCACTGCTGTTAGGAACCCACGACTTCAGCACCTTCCGTGCCTCGAGCGCAGATATGCACTTGAAGAACCCAGTGAAGACCCTAGATCAGATCCAGCTGGAACCTGGGGTCTCGTTCAGCCAGAGACACTTTTACAGAGATGTTCGCTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAAACAAGTGCGGAGGATGACCGGGGCGCTGGTCGCCGTCGGTCACGGTAGACTATCTGTTAGTCAGATGCAGGAGCTGCTAGAAGCGCGAGATTCGCGGGCCTTCCCGACAACCATGACCGCCCCAGCCCACGGCCTGTTTCTGACCCGCGTACAGTACAGCGACACAGaTCTTGGGACTTGTGTGCTGGATgaacagttatttaaataattttttcacaattaaagagacacatttttatctcctg
>XM_043252008.1
GGTTTTATTTTCAGGCGCACACAGCACTCACATGGCTGTATTTTATGTAGATCCTGAGTGGTGTTGTGTGTCTTACATTATTATTAGGCATATACAACATATTGTATTGACTTCAGCTGGATGCATGCGTTACTGCTTTTGACAAACATTAAGCGAATAGTTCAGGAAACATGCGAAATTCTGTCACCCGCTATTTAATCTTTTTCCAGTATACAGGGACCAAATACTGTGGCGTGATGAAAATACCAGCAGATCGAGCAGTACAGGGAGTTGGGAATCATTTAGAGAGTGCAGTGGGGAAACTCAAGCCGGTGAATAAGTTTTCAGTGGTCATCTCCAGCAGAACGGACTCTGGTGTGCATGCTTTGTGTAACTCGGCACATGTGGATATCCAGCGGAGTGGAGACAAGCCCCCGCTGCCCGAGCATGTCCTGGTCGATGCCTTAAACTTCCACTTGAAAGAAGAAGCTATAAGGACTCTCGATATCAACGCAATGCAAGAGGCTGCATCACTGCTGTTAGGAACCCACGACTTCAGCACCTTCCGTGCCTCGAGCGCAGATATGCACTTGAAGAACCCAGTGAAGACCCTAGATCAGATCCAGCTGGAACCTGGGGTCTCGTTCAGCCAGAGACACTTTTACAGAGATGTTCGCTTCTGGGAGCTCACTTTTAAAAGTAGGTCTTTTTTATACAAACAAGTGCGGAGGATGACCGGGGCGCTGGTCGCCGTCGGTCACGGTAGACTATCTGTTAGTCAGATGCAGGAGCTGCTAGAAGCGCGAGATTCGCGGGCCTTCCCGACAACCATGACCGCCCCAGCCCACGGCCTGTTTCTGACCCGCGTACAGTACAGCGACACAGaTCTTGGGACTTGTGTGCTGGATgaacagttatttaaataattttttcacaattaaagagacacatttttatctcctg

Function

NR:

description
tRNA pseudouridine synthase-like 1 isoform X2

GO: NA

KEGG:

id description
K06173 truA, PUS1; tRNA pseudouridine38-40 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252007.1 True 1092 mRNA 0.48 8 3285961 3299062
XM_043252008.1 False 942 mRNA 0.48 7 3285961 3299062

Neighbor

gene id symbol gene type direction distance location
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding downstream 21847 3256879 ~ 3264114 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 227531 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 230188 3055697 ~ 3055773 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 248853 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 474597 2807984 ~ 2811364 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 82423 3381485 ~ 3385791 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding upstream 155348 3454410 ~ 3456934 (-)
LOC122354690 NA coding upstream 379700 3678762 ~ 3678926 (-)
LOC122353608 LOC107658808,LOC107568054,LOC107750169 coding upstream 384747 3683809 ~ 3688280 (-)
cdh27 LOC107654208,LOC107730486,LOC107568064 coding upstream 392098 3691160 ~ 3702206 (-)
G78919 NA non-coding downstream 18286 3266756 ~ 3267675 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding downstream 19289 3266184 ~ 3266672 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding downstream 44642 3223735 ~ 3241319 (-)
G78903 NA non-coding downstream 53219 3231127 ~ 3232742 (-)
G78854 NA non-coding downstream 171391 3114297 ~ 3114570 (-)
G78969 NA non-coding upstream 113812 3412874 ~ 3414924 (-)
G79010 NA non-coding upstream 355220 3654282 ~ 3657289 (-)
G79069 NA non-coding upstream 417627 3716689 ~ 3719414 (-)
G79075 tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025 non-coding upstream 453868 3752930 ~ 3759723 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding upstream 480937 3779999 ~ 3780317 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 29749 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 172269 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 237737 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 299430 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 300844 2985044 ~ 2985117 (-)
G79003 NA other upstream 240939 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 514443 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 614186 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 662919 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 2439954 5739016 ~ 5765140 (-)

Expression


Co-expression Network