ptp4a1 (ptp4a1,LOC107563655,LOC107597142)


Basic Information

Item Value
gene id ptp4a1
gene name ptp4a1,LOC107563655,LOC107597142
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15489620 ~ 15493617 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252100.1
TGCGGTTTCTTGAGTCCAGCTGTAACCGGTTACCGGAGACTCCGTCACATACACGGCAGCGCTGTATGGTCAAACACCACAACACTTATTCTCCGGAGCGGCTTTATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGCGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCCGGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTAGAGTTTTAACGTTGGCGGGATCAGGCTTGGAGAGCAGGCGTCCACAGCGGTCGGCGGTTCTGGATGggaTCTTCAAGCTatttcaaaaagtcaaaaatggcTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAACCCCACTAATGCCACGCTTCACAAATTCATTGAGGAACTGAAGAAATATGGAGTGACTACAGTAGTTCGAGTGTGTGAGGCCACGTATGATGCAAACCTGGTTGTTAAAGAAGGCATTCAAGTTCTGGATTGGCCCTTTGACGATGGAGCTCCTCCATCTAACCAGATCGTTGATGATTGGCTGAATCTTCTTCGGATGAAGTTTAGGGAGGAGCCAGGCTGCTGTATTGCCGTGCATTGTGTTGCAGGCCTTGGAAGaGCTCCAGTTCTGGTTGCTCTGGCCCTGATTGAGTGTGGCATGAAATATGAGGATGCAGTTCAGTTCATTCGACAAAAGCGCCGCGGAGCATTCAACAGCAAGCAGCTCTTCTATCTGGAAAAATATCGTCCCAAAATGCGCCTTCGATTCAAGGATTCCAACGGCCACCGCAACAACTGCTGCATTCAGTAAAAGCTCGCGTGTCAGCCTTTCTCAAATGTTTAATGGGAATTTGTATCTAGCATAGGTAGTTTGTTCTCTTAATTGGtaactgtgaaaatgctgttacGAAAATTATGCTTATTTCGTTACAAGTGTCCCCTGCccttctcttttgtttttatgtatttcctGTGGAGAACCAAGGTTAAGCGCTTGTTTTGAACATGAGCTTAGTGTTTTGCAATGAGCTTTATGTTGGTGAAACATCTGCCAAACACGTAGTACAACATTACAGCCTAAATGGtttaattaaagaataatttcgtacattttttttgttgttgatgattTCAGTCAATCAGTAATAAACGCCTGCCTCcgaaaagataaaaaataaatgccttaTCACAGCAGAAAGACACCGTCTGGTGGAGGAGTTCTCGTGGCATTTGGAGAGGTTTCTCAAAGAtgttttttgcagaaaaaaaaaattcaagaagaaagattaataaaaaatatataggaaaATAAAAcctctttatataaatatattgaaggGTGGGGTActactttttgttgtttatcCAAACTTTGTTTACCTATTACTGCCATGTCAATAGtgtgatgtttgtgttttgGCTTAAAACTGGACCTCAATGTCTGCGGtatttttatgcctttttatttGATGTGCGTAACTTAATATTTCAATACTTGATTTGCGTACGGTATTTGATTATGTGTACTGTTAAACCACCTATTTATATCATTGGATATGTGTTTTAGTATAGCAAGAAACAAGTTTGCCAATTTGAGAGTACAATAAAGATACACTGAAGGAGCA
>XM_043252101.1
TGCGGTTTCTTGAGTCCAGCTGTAACCGGTTACCGGAGACTCCGTCACATACACGGCAGCGCTGTATGGTCAAACACCACAACACTTATTCTCCGGAGCGGCTTTATGATTAAGCTACAATCTTCAATGAGTAAGCATATTCCACAGTTCTGTGGTGTTTTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGCGATTACTGCCAGGCTCAGCACGGCGTTTATGCAGAGAAGTGAACGGCCGGCCTCGCTACCTCATCAGAAGAGAGACTTGTGTTAGAGTTTTAACGTTGGCGGGATCAGGCTTGGAGAGCAGGCGTCCACAGCGGTCGGCGGTTCTGGATGgggtaaaaaaaatctcttgaaGTTCACTGCCCTCGCCGGCCCTACGTCTTCACTCTTCACCAGAGGACCAGCcttggtttttttcttttcctttcttttcttttttttttttttttgctattaatcCCGTCACACCTCTTTTCTCCTAATCGTATCAGCCAGATTTCTTTTGTTGTTAGAGAGAGTTTACtccatttttttcctttgagaTCTTCAAGCTatttcaaaaagtcaaaaatggcTCGTATGAATAGACCTGCCCCAGTGGAGATCACTTACAAAAACATGAGATTCCTCATTACCCACAACCCCACTAATGCCACGCTTCACAAATTCATTGAGGAACTGAAGAAATATGGAGTGACTACAGTAGTTCGAGTGTGTGAGGCCACGTATGATGCAAACCTGGTTGTTAAAGAAGGCATTCAAGTTCTGGATTGGCCCTTTGACGATGGAGCTCCTCCATCTAACCAGATCGTTGATGATTGGCTGAATCTTCTTCGGATGAAGTTTAGGGAGGAGCCAGGCTGCTGTATTGCCGTGCATTGTGTTGCAGGCCTTGGAAGaGCTCCAGTTCTGGTTGCTCTGGCCCTGATTGAGTGTGGCATGAAATATGAGGATGCAGTTCAGTTCATTCGACAAAAGCGCCGCGGAGCATTCAACAGCAAGCAGCTCTTCTATCTGGAAAAATATCGTCCCAAAATGCGCCTTCGATTCAAGGATTCCAACGGCCACCGCAACAACTGCTGCATTCAGTAAAAGCTCGCGTGTCAGCCTTTCTCAAATGTTTAATGGGAATTTGTATCTAGCATAGGTAGTTTGTTCTCTTAATTGGtaactgtgaaaatgctgttacGAAAATTATGCTTATTTCGTTACAAGTGTCCCCTGCccttctcttttgtttttatgtatttcctGTGGAGAACCAAGGTTAAGCGCTTGTTTTGAACATGAGCTTAGTGTTTTGCAATGAGCTTTATGTTGGTGAAACATCTGCCAAACACGTAGTACAACATTACAGCCTAAATGGtttaattaaagaataatttcgtacattttttttgttgttgatgattTCAGTCAATCAGTAATAAACGCCTGCCTCcgaaaagataaaaaataaatgccttaTCACAGCAGAAAGACACCGTCTGGTGGAGGAGTTCTCGTGGCATTTGGAGAGGTTTCTCAAAGAtgttttttgcagaaaaaaaaaattcaagaagaaagattaataaaaaatatataggaaaATAAAAcctctttatataaatatattgaaggGTGGGGTActactttttgttgtttatcCAAACTTTGTTTACCTATTACTGCCATGTCAATAGtgtgatgtttgtgttttgGCTTAAAACTGGACCTCAATGTCTGCGGtatttttatgcctttttatttGATGTGCGTAACTTAATATTTCAATACTTGATTTGCGTACGGTATTTGATTATGTGTACTGTTAAACCACCTATTTATATCATTGGATATGTGTTTTAGTATAGCAAGAAACAAGTTTGCCAATTTGAGAGTACAATAAAGATACACTGAAGGAGCA

Function

symbol description
ptp4a1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in gut; myotome; nervous system; and pharyngeal arch. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).

NR:

description
protein tyrosine phosphatase type IVA 1-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252100.1 False 1714 mRNA 0.41 7 15489620 15493617
XM_043252101.1 True 1921 mRNA 0.41 6 15489620 15493617

Neighbor

gene id symbol gene type direction distance location
hyls1 si:dkey-23f9.4,LOC107680541,LOC107597141,LOC107674570,LOC107563627,LOC107718881,LOC107753882 coding downstream 15382 15467970 ~ 15474238 (-)
krt98 LOC107562078,LOC107680525,LOC107753857,LOC107563686,LOC107718877,LOC107674549 coding downstream 59550 15423152 ~ 15430070 (-)
jupa jupa,LOC107562072,LOC107753847,LOC107680531,LOC108438667,LOC106564751 coding downstream 117938 15349738 ~ 15371682 (-)
gpr179 LOC107753843,LOC107718864,LOC107680456,LOC107562070,LOC107563489,LOC106564745 coding downstream 206776 15267975 ~ 15282844 (-)
LOC122353770 NA coding downstream 243920 15242488 ~ 15245700 (-)
myom2a LOC107674554,LOC107680534,LOC107597144,LOC107753884,LOC107718897 coding upstream 5497 15499114 ~ 15521716 (-)
ly75 LOC107680532,LOC107674542,LOC107563496,LOC107597186,LOC107753885,LOC107718898 coding upstream 29726 15523343 ~ 15550688 (-)
itgb6 itgb6,LOC107747010,LOC107680548,LOC107597145,LOC107674564,LOC107718899 coding upstream 83989 15577606 ~ 15590464 (-)
zgc:193807 NA coding upstream 129305 15622922 ~ 15624013 (-)
LOC122353771 NA coding upstream 136513 15630130 ~ 15631268 (-)
G82216 NA non-coding downstream 17931 15471306 ~ 15471689 (-)
G82211 NA non-coding downstream 39221 15444522 ~ 15450399 (-)
G82160 krt94,LOC107753855,LOC107680518,LOC107562075,LOC107674540,LOC107718880,LOC107563560 non-coding downstream 42783 15420805 ~ 15446837 (-)
G82190 LOC107562076,LOC107753881,LOC107680504,LOC107718872,LOC107674524,LOC107563570 non-coding downstream 147202 15337927 ~ 15342418 (-)
G82189 NA non-coding downstream 153797 15335006 ~ 15335823 (-)
G82214 NA non-coding upstream 4033 15497650 ~ 15498104 (-)
G82260 NA non-coding upstream 119529 15613146 ~ 15613851 (-)
G82286 LOC107593138,LOC107655962,LOC107753871 non-coding upstream 223980 15717597 ~ 15732758 (-)
G82294 NA non-coding upstream 235172 15728789 ~ 15729815 (-)
G82296 NA non-coding upstream 240940 15734557 ~ 15738741 (-)
LOC122354564 NA other downstream 87929 15400918 ~ 15401691 (-)
LOC122354561 NA other downstream 254184 15233933 ~ 15235436 (-)
G82067 NA other downstream 275562 15204961 ~ 15214058 (-)
G81866 NA other downstream 953228 14534718 ~ 14536392 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other downstream 1037880 14442601 ~ 14451740 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other upstream 58739 15552356 ~ 15577065 (-)
LOC122354045 NA other upstream 101948 15595565 ~ 15614937 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 1097189 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 1110387 16604004 ~ 16606580 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 1285295 16778912 ~ 16912574 (-)

Expression


Co-expression Network