XLOC_006615 (slc1a4)


Basic Information

Item Value
gene id XLOC_006615
gene name slc1a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24429918 ~ 24448278 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012768
aacatcaacaacaaccacaataataataataataataaaaacaataaaaacatcaataacaacaacaacaatcacaataataataatactaataatattattatcaataataataataattcttacaacaacaacaacaataataataataataaataacaataataataacaacaacaacaataataataataataataataataataataataataaataataataacaataataacaatattaaataataaaataataataataacaatattcaacaataataataaaataataataatagtctctATTCACATGAAGGAAACAGAAAGTCAAGTACTTGCTACTACATTTCATCAGTATTTTAGTAGGCCTATATTACATTGTGattacatatttaataatttaatatataatttatttaaacattatgtAGACAGAATGACCCTGGTATTATTTTTCTAAATTCagcaatataatgttaacattaaatataacctaaattgtacattattaggcctattattactactaatatggtaaaatactgactgattgattgattgattgattgattgattgattgattgattgattgattacttcaatttaatttcattcatgcagtttatttgcatgCAAATTATGAAATGCACACTTAAAATTCaccaataacattattattattattattaatcattctaTGTTGCATGATTAGTTTCTGATATCAGCAACCCTTTGCCTTGTTGCATCATTTCATCTTGGTCCAGGAGTGCGCATGCCCTGAGTCTTCATCTTTAAAAGCCCCCTCGTCATTGGTAGATGCAGCACATGTCTATAAGTGCCGGCTGGTTTTTACGAGCGCTCTCCAGTCCGCTCTGCTCCACGCGCACGCACGCTTCTCTCGAGTAAAGCCTGGTTCCTCTTAAAAAGAAGGCGGAAAATCATGGAGGAGAAGAAGAGCGAAATCAACGGACACGCTGGGCACAAATGCTCGTTACCAACGGTCTCAATAAAATCAGAAAAGAAAAGCTGTAAGGACAAATGCGCCGGTTTCTTCAAAAGAAacctgctggtgatcatgacGGTGTCCGGGGTCCTGGTGGGCGTCGGGCTAGGGATGATGGTACGGAACATGAACCTCACCCGTGCGCAGATGACTTATTTCGCCTTCCCCGGAGAAATGCTGCTGAGGATGCTCAAGATGATCATCCTCCCTCTGGTGGTGTGCAGTTTAATTTCTGGCGCCGCGAGTCTTGACACGCGCTCGCTGGGAAAGCTAGGAGGAATCGCCGTGTCTTACTTTCTGGTGACCACCCTAATCGCTTCATCTATCGGGGTCGCGCTCGCCTTCATCATCAAACCGGGAGTGGGAGCCGGAGCGCTCAACACCAACAACTTGGGGCTGGAAGGCGTGAGCAACAACAAAGAGACGGCGGATTCGTTTTTAGACCTTGCGAGAAACCTGTTTCCATCCAACCTAGTGGCTGCGGCTTTCCGCTCATATGCCACTGACTACAAGACAGTTCTTATTGGAAATGGAACAAATGGAACCCTCAACTACCAGAAGGTTCCCTTTGGAACAGACACAGATGGAATGAATATTCTGGGTCTTGTTCTCTTCGCTATGGTTTTTGGAGTTGCTTTGAGGAAGCTTGGGGCAGAAGGAGAGGAGCTCATTCGCTTTTTTAATGCCTTCAATGAAGCCACTATGGTGCTTGTGTCCTGGATCATGTGGTATGTGCCTTTTGGCATCATGTTCTTGGTTGGCAGTAAGATCGTGGAGATGGAAGATGTGGTTCTGTTGGTCACTAGTTTGGGAAAGTACATTTTCGCCTCAATCCTGGGCCACATCATCCATGGTTGTATTATCCTACCTCTTATCTACTTCGGCTTCACTCGTACAAACCCCTACAGTTTCCTGTCTGGCCTCATCACACCTTTTACCACTGCCTTTGCCACCTGCTCCAGCTCAGCGACTCTGCCCACCATGATGAAGTGTGTAGAGGAGAACAACGGTGTCGACAAACGAATCAGTCGGTTCATTTTACCTATCGGAGCCACTGTTAACATGGATGGAGCGGCCATTTTCCAGTGTGTTGCTGCTGTGTTTATTGCCCAGCTCAACAATGTTGATCTTAACGCAGGCCAGATCTTCACAATCCTGGTGACAGCCACCGCTTCTAGTGTGGGAGCAGCAGGTATTCCAGCCGGAGGAATCATCACCATCGCCATCATTCTGGAAGCCATTGGTCTGCCAACCCATGACCTGTCACTCATGTTGGCCGTAGACTGGATTGTAGACCGCACCACTACTGTGGTGAATGTGGAGGGTGATGCCCTCGGTGCTGGAATCCTTCACCACATCAATGAGCAAGAGATGAAGAAACAAAAGCATCAGCAGGAGCATCAGGAGGAGCAGGAGCTGCTGGAGGTCAAGGTGGAGGTGGTTGCTAACGTCAAAGCAGAAGAGGAAACCTCCCCACTCGTCACACACCAGAACCAAGAAGAAAACTCCTCACGCGAAACACTCAATGACAAGGACGGTGTGGAGTCTGTGCTGTAAACTGTCAACTGTGGTCTCTCATATCCTTCTCCTTCACTCTTTctcttttactttttaaaaaaaccaCTAAAGACGTGATGTCGCTGTGAAGTTTACATCAAACATAAGGTTTACTCGAATCTGTGAATGGAACACTAATGGCCAGTCTGTTTTACATTTAGTTtgaagtattttacagttatgataATCTTATCCAATTGTGCCAAATCGTTGGTTTTTGTGTTTGGGAACATCCCAGATTATATGTAAAAGTCGAAAAGGGAATATTTCCAATTTGCAAGAAGATAACAATGGATAGTAATGAAAACCAGTCACCGACTGACCTCTTGATCTTTATTTTAACTGATTGTGTGAAACATTAACTATTTTTGAAGATGAGCCGAAAAGTATTTGCTGTAAATATTTATGTCCCTAATAGCAAATCCTGTTAAATTATGAAATAGTCTGTTGATTTATCGGGgactgtttaaaaaatgtgcatgTGTGCTCGTGAAGCAGATCCACAGCTTGTGCTCTATGCTTTTAATACAATCTAATTTTAAGTGAAGCTCAGAAATTAAGATAAATCTCAGGGTCACTGGTGATATTAAACCTGAGGATGTGAGACATGCTGTATGGTCAAACATTTCCTGAAAGACCTCAGTTCTCattaacacagacacacacacacacgcacaaacacgcacacatatgCTGTCGTTTGACCCAAGAACATCTCACATGGTACATAGTGACCCCTTGTGGTCAGTGGGATTATAATTGTTGAACATTTTGTACATCTTATGCCCAATTTTTGCGTTTGGTCATTAGTTATGAAGTAAACCATTTGATGGACGATTTGATACGTATGAATGAGtttaatttattgtaattgtTTAGCCTTTTGTACTGCATTGAAGATTATTTTTCGTAATCTGTTGCTAAAGATCCAGATGTATGTAAAAGATTTAGGTGAACTCTAAAAGCTGTTAATTAGCACTTGATTggttttatatacattttctcCATGTACTTTTTCAGTCTCTTTTAACTGTAAGTTATCTTGTTACCAATGTGTGTCTGCCTAATATTAAACCAAAAGCATTTGTGTCTCTGATTTACGAGAGTTTTATTGTTACATTGTGAGAACCACCAATGGGCTATATGCGCAGCtaatgtttttcagccaatgatgaacttccggtgaaaagtttatgtgactgttttcagtttcataaggttccttttacagcatcgatgttgtactGTAAttcaagcatttatttagttgttaaagtgtaaaaagagATGACAGACTGTTTAAACGCATGTGCCGTCATTAGCAACTAGCCAGagctgacatttttttaaaatttctcgGGTAAAATTCATTTCCATAAATTTTAAAGACAAGGcacagaaaaatataatttaatgcagtgcttcttgtttggtcagATACCCAATTTatacttccaggagacttgggatgtctgtctTTAACGCAgcaattttgtatgggatgacaagtAACCAGAAGCCCTAGGGCTGACtgaatttaaatgtgtgtgtccATATACCCCATTGTAGGCCTAACCTGTTACTGATTACAAAGTATATAATGAAATTCGTAGTCATTCACATAAACTTTATGATTAGTTTAAGTcataggtaggcccacacggaatctgcgcgtgcagaaatccgcagatttccacAGTTTTTTAGTTTATCATtgagtgtatttatttacttgtgtcaaagtgtgtaaatttatatttattcagtttttaaatgcatttcagtaacattattgtgatataataatagtaatatcaaaATGTTCACATGAtctatttacaatacagtttgtaaaataacattttctgtcttttcgtaggtatattatatgagaaacttgctttgtttaccaaataagtggatctaactggatttgcaatgtaaacattaaataaaagttaaaatgtattattttttatttcatatattaagttctTAGTTATGATATTCCTAAAATCATTTAACATAAATCCGTaggttttttaaaaacaaaattctcagcagaaatagcaaaaaatgtctgcagattctgtctgggcctCATATGTCTCAAACTCTATTCATGGAGGGATGCAGCTCTCAGTCTACttgagactattaagcaggtgcgagttggaggtggttaaagctaaactatgcagagctacggccctccaggaattgagtttgaccaTTAGGTAATTTATACTGCTTGCTTTTggattattaatattgtaaaaataaaagtatgaaTGAAAAAGTAGTACTTTCTTTGTTACCAACAAAATGCCTTAAAAACCATATTGCCAGGGTTTGtacatgtaaatattaaatttgtaaataatgttgGAG
>TCONS_00012769
ATGGAGGAGAAGAAGAGCGAAATCAACGGACACGCTGGGCACAAATGCTCGTTACCAACGGTCTCAATAAAATCAGAAAAGAAAAGCTGTAAGGACAAATGCGCCGGTTTCTTCAAAAGAAacctgctggtgatcatgacGGTGTCCGGGGTCCTGGTGGGCGTCGGGCTAGGGATGATGGTACGGAACATGAACCTCACCCGTGCGCAGATGACTTATTTCGCCTTCCCCGGAGAAATGCTGCTGAGGATGCTCAAGATGATCATCCTCCCTCTGGTGGTGTGCAGTTTAATTTCTGGCGCCGCGAGTCTTGACACGCGCTCGCTGGGAAAGCTAGGAGGAATCGCCGTGTCTTACTTTCTGGTGACCACCCTAATCGCTTCATCTATCGGGGTCGCGCTCGCCTTCATCATCAAACCGGGAGTGGGAGCCGGAGCGCTCAACACCAACAACTTGGGGCTGGAAGGCGTGAGCAACAACAAAGAGACGGCGGATTCGTTTTTAGACCTTGCGAGAAACCTGTTTCCATCCAACCTAGTGGCTGCGGCTTTCCGCTCAGTTCCCTTTGGAACAGACACAGATGGAATGAATATTCTGGGTCTTGTTCTCTTCGCTATGGTTTTTGGAGTTGCTTTGAGGAAGCTTGGGGCAGAAGGAGAGGAGCTCATTCGCTTTTTTAATGCCTTCAATGAAGCCACTATGGTGCTTGTGTCCTGGATCATGTGGTATGTGCCTTTTGGCATCATGTTCTTGGTTGGCAGTAAGATCGTGGAGATGGAAGATGTGGTTCTGTTGGTCACTAGTTTGGGAAAGTACATTTTCGCCTCAATCCTGGGCCACATCATCCATGGTTGTATTATCCTACCTCTTATCTACTTCGGCTTCACTCGTACAAACCCCTACAGTTTCCTGTCTGGCCTCATCACACCTTTTACCACTGCCTTTGCCACCTGCTCCAGCTCAGCGACTCTGCCCACCATGATGAAGTGTGTAGAGGAGAACAACGGTGTCGACAAACGAATCAGTCGGTTCATTTTACCTATCGGAGCCACTGTTAACATGGATGGAGCGGCCATTTTCCAGTGTGTTGCTGCTGTGTTTATTGCCCAGCTCAACAATGTTGATCTTAACGCAGGCCAGATCTTCACAATCCTGGTGACAGCCACCGCTTCTAGTGTGGGAGCAGCAGGTATTCCAGCCGGAGGAATCATCACCATCGCCATCATTCTGGAAGCCATTGGTCTGCCAACCCATGACCTGTCACTCATGTTGGCCGTAGACTGGATTGTAGACCGCACCACTACTGTGGTGAATGTGGAGGGTGATGCCCTCGGTGCTGGAATCCTTCACCACATCAATGAGCAAGAGATGAAGAAACAAAAGCATCAGCAGGAGCATCAGGAGGAGCAGGAGCTGCTGGAGGTCAAGGTGGAGGTGGTTGCTAACGTCAAAGCAGAAGAGGAAACCTCCCCACTCGTCACACACCAGAACCAAGAAGAAAACTCCTCACGCGAAACACTCAATGACAAGGACGGTGTGGAGTCTGTGCTGTAAACTGTCAACTGTGGTCTCTCATATCCTTCTCCTTCACTCTTTctcttttactttttaaaaaaaccaCTAAAGACGTGATGTCGCTGTGAAGTTTACATCAAACATAAGGTTTACTCGAATCTGTGAATGGAACACTAATGGCCAGTCTGTTTTACATTTAGTTtgaagtattttacagttatgataATCTTATCCAATTGTGCCAAATCGTTGGTTTTTGTGTTTGGGAACATCCCAGATTATATGTAAAAGTCGAAAAGGGAATATTTCCAATTTGCAAGAAGATAACAATGGATAGTAATGAAAACCAGTCACCGACT

Function

symbol description
slc1a4 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030616-566 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pancreatic system; and yolk syncytial layer. Orthologous to human SLC1A4 (solute carrier family 1 member 4).

Ensembl:

ensembl_id ENSDARG00000000551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012768 False 4957 mRNA 0.38 8 24429918 24448278
TCONS_00012769 True 1874 mRNA 0.48 7 24431989 24447332

Neighbor

gene id symbol gene type direction distance location
XLOC_006614 cep68 coding downstream 823 24421515 ~ 24429095 (-)
XLOC_006613 tbp coding downstream 33719 24381344 ~ 24396199 (-)
XLOC_006612 rhoua coding downstream 50647 24371815 ~ 24379271 (-)
XLOC_006611 NA coding downstream 78375 24346989 ~ 24351543 (-)
XLOC_006610 si:ch211-202m22.1 coding downstream 97423 24329771 ~ 24332495 (-)
XLOC_006616 NA coding upstream 124808 24573086 ~ 24574746 (-)
XLOC_006617 NA coding upstream 128987 24577265 ~ 24578022 (-)
XLOC_006618 AL831745.1 coding upstream 136946 24585224 ~ 24588220 (-)
XLOC_006619 NA coding upstream 142142 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 coding upstream 154132 24602410 ~ 24606627 (-)
XLOC_006471 BX537274.2 misc downstream 14165013 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23603693 825904 ~ 826225 (-)
XLOC_006607 CR762497.1 non-coding downstream 143528 24283670 ~ 24286390 (-)
XLOC_006605 CR762497.2 non-coding downstream 302739 24127063 ~ 24127179 (-)
XLOC_006602 AL772289.1 non-coding downstream 468512 23961292 ~ 23961406 (-)
XLOC_006597 NA non-coding downstream 1018287 23408029 ~ 23411631 (-)

Expression


Co-expression Network