orc2 (orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577)


Basic Information

Item Value
gene id orc2
gene name orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11486516 ~ 11499922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252196.1
TTCCTCCTGTCACACGTGGGTTGGAATCTTTCCTGTGGCGCGGAATCGAGAAGTTCCCTCAGGTTTTCAACAGATCAAATTCCATCGAAATGTGGTTTTATTATGAAAACCGATGTTAATAAACGCGTGTGCGGGACAgatattacagtttaaagtcCGAGTTTAGCTCGTGAGCCGCAGGATGACGCAGAAACAGCCGTTAGAGGTTCGCTTCGTGTCTGATGAAGAGGTTTTGGATCATATTGTAGAGAAACAACAAGgtaaaaAACTGGTGACCCTGAAAACCCAGCAGAAATCCAAAagatgtgatgatgatgatgatgatgatgatgaagaggtGTTGAATGAGCAGAACTATGTGGACGCTCTGTGCGCCGGATCACAAGATGAGAGTGAAAACGGCTCGGTCACCGCAGGAGCGTCTGTCTTCTCGTTTCAGACCATCAAACGGGGGAATAAAATGGCTCAGATGGcgtcTGAATGGGCCCGGACGCCTGGGAAGAGCGTGACCTTCAGCACGTCAGACACAAACGAGGACTCGTCCAGCCCGACACGCGCCGCTAAGAAATCAGCCGATCAGAACAAAACCCCTCAGAAGGGAAAGAAGGTGCAGTTCATCTCAACGACTCCACACCGTCTGCGCAAGAGACTGTCAGCTCCGAACCTGCGCTCAGACAGCGAGAGTGATTTCTCCCCCTCGAActcggaggaggaggaggatgaggaagaacACGGCGGGAAGAGGGCCGAGCCGACCAAAACACCCAGCAAAAACACTTCAGCCGCTGCCCTTTACAAGACGCCCAGCAAGAAGGGCAGGAGAGCGGCAGAGTCTGATCTGGTGGAAGAGTATTTTGAGGCTCACAGCAGCTCTAAGGTTCTCACGTCCGATCGGACGCTCCAGAAGCTCCAGACGCCCAAGCTGGACCGGGAAACTCTGCTCAGCCTCCTGAGTGAAAACCAGCCGCGCTTCGCAGAGGAAATCAAGAAGATGAACGCTAAACACGAGAAGAACTTCAACCAGTGGATGCTGCAGCTGcaCATGGGTTTTAATATCCTGATCTTTGGTTTGGGCTCCAAGAAGCTCTTGCTGGAGAAGTTCTGCACCTCGATGCTGTCTGAGTATGATCATGTGGTGGTCAATGGCTTCTTCCCCAGTATGACCCTCAAAGCGATCCTCAGCTCCCTCACCTGCGGCGTGTTCGGACACGAGGGAACTTTCCGTAATCCTGCAGACCAGATCGACTTCATCATCAAAGCTCTGAGAGAAGACCCAAGCAATCACGTCTTCCTGCTCATCAATAACATCGACGGGCCCATGCTGAGGGGCGACAGGACCCAGCAGGCTCTGGGGCAGCTGGCGGCGCTTCCCAACATGCACCTGCTGGCCTCCATCGACCACATCAACGCTCCTCTCATCTGGGATCAAGCGAAGATGAGCATGTTCAACTGGCTGTGGTACGAAACCACCACCTACCTGCAGTACACCGAGGAGACGTCCTACGAGAACTCCCTGCTGGTGCAGCAGACCGGAGCCCTGGCCCTCAGCTCACTCACACACGTGCTACGGAGCCTCACGCCTAACGccagGGGAATCTTCAGATTGCTGGCTGAGTTTCAGCTGGAGAACAAGGACAATCCTGCATACACAGGACTGTCTTTCCAGGACTTCTACCAGCGCTGTCGTGAGTCGTTCCTGGTGAACAGTGACATCACGCTCCGGACACAGCTCACCGAGTTCAGAGACCACAAACTCATCCGCACCAAGAAGgGCGCTGATGGAGTGGAGTATCTGCTGATCCCGGTGGATAACGGCACTCTGAGCGACTTCTTGGAGAAAAACGACGTGGAGTGAAACCAGGAAAACCTCGCTGCTGTCCACGGATCAGCGAACGTCTTTCTGATCAAGAACTTGCCGGCATCGTATCATAACTTGTTTCGTTTTGCAGTTCACGTCCCATggaaagtgaatgggtgccgtcagaatgagaaacatcacaataatccacggcACTCCGGTCCATCGGTGAACATCCGGAGGAGAcggaagatcaaactaatccagcgttGAGAGgtttttaactcaaatatgagtctgtaataataaaagtgttctGATCTGAAtgaggagagaaatctgcacggATCAAAACACCTCTAAACTAATATCTGAAgagttattatagattatatttagtgctggatctgtcttctccagatgttcactgatggactgtggattatagagatgtttttatgagactctcattctgacggcacccattcgcttccATTGCTGAGACGCTGATGCAGTGCTACATTACTTCCAATCTCGTAGtgaaacaaattaatttcagcACAATGTCATCCGGTGTCTGCGGCTCCTTCCTGTACAGCGTTCTGTAAAGTTTGTTTAGGATCGCAAAGTGAACACAATAAATATTCTTATGCA

Function

symbol description
orc2 Predicted to enable DNA replication origin binding activity. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Orthologous to human ORC2 (origin recognition complex subunit 2).

NR:

description
origin recognition complex subunit 2

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K02604 ORC2; origin recognition complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252196.1 True 2452 mRNA 0.51 16 11486516 11499922

Neighbor

gene id symbol gene type direction distance location
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 1034 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 51992 11424607 ~ 11434524 (+)
afmid afmid coding upstream 62302 11417605 ~ 11424214 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding upstream 81967 11397046 ~ 11404549 (+)
si:dkey-93h22.7 NA coding upstream 89889 11392893 ~ 11396627 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding downstream 12411 11512333 ~ 11523658 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 39756 11539678 ~ 11547713 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 97868 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 206186 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 282737 11782659 ~ 11794097 (+)
G80804 NA non-coding upstream 14215 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 34378 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 38995 11443640 ~ 11447521 (+)
G80667 LOC107567635 non-coding upstream 47790 11437907 ~ 11438726 (+)
G80784 NA non-coding upstream 158838 11326427 ~ 11327678 (+)
G80808 NA non-coding downstream 8078 11508000 ~ 11509053 (+)
G80809 NA non-coding downstream 11552 11511474 ~ 11511894 (+)
G80814 NA non-coding downstream 49693 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 57040 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 71180 11571102 ~ 11571431 (+)
G80761 NA other upstream 259894 11222347 ~ 11226622 (+)
G80638 NA other upstream 824546 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 1015329 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1946395 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 2061214 9422950 ~ 9425302 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 5731 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 25101 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 28797 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 80104 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 198402 11698324 ~ 11700214 (+)

Expression


Co-expression Network