col6a1 (col6a1,LOC107715812,LOC107677507,LOC107685955,LOC107718214,LOC107551781)


Basic Information

Item Value
gene id col6a1
gene name col6a1,LOC107715812,LOC107677507,LOC107685955,LOC107718214,LOC107551781
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 9710265 ~ 9740138 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252236.1
ctcctccctgcTGCTGTAAGGCGTTTCATTCTGCTGCGCGCGCTGAGCGGACGCGCCACCGTGCCACTGTCCGCCACTTCATCTCATCCGAgcctattttcatatttcaccaGCAGTCATATCActttttctgttctgtgtgtCCCTCAACCTCCGTTTGCACGGTTAACGTGCAATAACATCAGGATCTATGGCGCTTAATGGATATATATTGACCGCTCTGTGCGCACTTTTGGCAGGGATCATCGCTCAGGATGCCCAAAGAATCTCCTTCAGAgAGTGTCCTGTGGACTTGTTCTTTGTGTTGGACACGTCTGAAAGTGTGGCCCTCAGATCCAAACCTCCAGAGTTTTACATAAACCAGATCAAGACCTTCACAAAGCTGTTCATCGAACAGCTACAAAACCTACCACAGCCATGTGATCGCAGCGTGACGTGGAACTCCGGAGCGCTGCACTACAGTGACGACATCGAGCTGGTGATGGGACTAGTTgacctgaaaacaaaaaaagttgaccTGAAGGCGGCCATAGACAAAATCAAATACATCGGCAAAGGAACGTACACCGACTGTGCCATCAAGGAGGGCATCTCTGAGCTGCTCCGAGCGGGCTCCCACTATCACGAGAATAAGTACATAGTGGTGGTCACGGATGGCCACCCCGTGACCGGCTACAAGGAGCCGTGCGGCGGGATCCAAGAGGCCGCCAATGAAGCGCGACAGCATGCCATCAAAGTGTTCGCTGTGGCCATCTCACCTGACCAGGAGGACACCAGACTCTCTGTCATCGCCACAGATGCGAGCTACAGACAGAACTTCACCGCTGCAGACAACTCCCGCTCCACACAGATGAACACCATAAACACCATCATCAACATGATCacAAACGAAACAAAGGATGTGTGCTGCTCCTTTGACTGCAACGCTCCTGGAGGCCCTCTGGGACCCCCTGGTGAACCAGGACAAAGAGGAGAGGATGGAAGACCGGGTATGCCAGGAGAGAAAGGAGATGTTGGCGCTCCGGGAAATGTTGGTGATCCAGGTCCTGTCGGTTACCAAGGAATGAAGGGAGACCAAGGAATAAGAGGCGATAAGGGAGAGAGAGGTCATAAGGGTTTCAAGGGAGACAAAGGTCAACATGGTCTTGATGGCGTTGATGGACGTAAGGGTGAGGCAGGATTCCCTGGCCTTCCAGGCTGTAAAGGGTCACCAGGGCCAGATGGCTTGCAAGGAGAACCAGGTCCTAAAGGAGACCCCGGCCAATATGGATCCAAAGGAGGAAGAGGAGATCCTGGCAGAGATGGTGAACCAGGAAGACCAGGAAACTATGGGTCTTCAGGGGCGAAGGGAGACAGAGGTCCTCGTGGAGCCAATGGGGATAAAGGCGAGCGAGGAGATGATgGACTACCAGGACCAGATGGCCCAAGAGGAGACAGAGGCATACCTGGTGAGAAGGGTGAACAAGGTTCCCGAGGTAACAGAGGGCCCAGAGGCGACCCTGGTGAACCCGGGCCCCGGGGTGAACAAGGACGTGAGGGGTCATCAGGGCCAAACGGAGATCCGGGTGAGCCAGGAAGGTTGGGGGCACCAGGTTACCGTGGTGATGAGGGTGCTGCTGGGCCAGAGGGAGCTAAAGGGCCCAGAGGAATCAAAGGGGCCCCAGGAGACAGAGGCCTGATGGGAGAGAGGGGTGAAGATGGACCACCAGGAAACGGAACAGAGGGCTGCCATGGTTTCCAGggTTATCCTGGGCCCAGGGGCGAGCAAGGAGTACCGGGTGGAAAAGGAACCCCTGGACCCAAGGGAGATGATGGAGAGCCAGGTGACCCTGGATCAGATaataaCAGACCAGGACAACCTGGGCCTAAAGGAGCCAAAGGTCACAGAGGACCTGAAGGAAGAGCTGGACCACCAGGACCACCTGGGCCGCAAGGAGCTGATGAATGTGAGATTCTGGATATCATCATGAAGATGTGCTCTTGCTGTGAATGCAAATGTGGACCCCTGGACATTGCCTTCATTGTGGACAGCTCTGAGAGTATCGGAGCTACTAACTTTGCCATCGCTAAAGACTTCATTGTGACGGTAATGGACAGGCTCAAATTAGGACAGtttggTGCCAACGAGTCTCGTATCGGAGTGGTGCAGTACAGTGGTGCCAGTGCTCAGGAGGTCGTACAGCTCGGTGACCCCAACATTAAGACCTTAACAGACCTGAAACAAGCTGTGAAAGAGTTGCGCTGGCTGGCTGAAGCCACGTACACCGGAGAAGCTCTGCAGTACTCGCTAAACAATATGATTAACAAGCTTGTGACAGAGAGGAGTGTGGTCATTGTCCTTACTGATGGACGCTCTGACACCAAAAGAGACAATGTGCCCCTAAATGTGCTGTGCGGCAAGGGACTGAAGGTTGGTGGTGTTGGAGTGACGGATTATGCAGAAAGGAATCCCAATCCAGAACAGCTTGATGAGGTTGTGTGTAAAGATGATCCCAGAGAAGGCTTTGCCTTTGTCTTAAACAACTTTGGTCTTCTTCTGGATGACAGTTTCCTGCAAAACCTGACTGAGAAGATCTGTGAAGACAAGAAGTGTCCCACTTATACTTGCCCAATTTCATTTACTGACAACACCGATGTCCTCATCATGATGGACAGCTCGGCGAGCGTGGGCTCCAAGAACTTCGAGATGACTAAGGAGTTCGCACGAATGCTGGCGAAGCGCTTTTTGTCAGCAGAAAGAGGAGGCCTCCAGGTGCGGGTTGGCGTCGGCCAGTACAGCAACAACGCCAATATGGAAGCCGAATTTTCCTCAAACACCACCCAGGTGGTCGCTCAGATCGCTGAAGCAAAATTCCAGAATGCAGGTACACAGATAACAAACGCTCTCAGCTTCGCCATTGACCGCTTCAGGGGTGGCCGGACGAGGAAGAAGAAGCTGCTGGTGTTTTCAGATGGCCGTTCCCAAGGCATCAACAAAATCCAAATTGAAAAATCCGTGGAGCAAGTGAACAACGCGGACATTGAGATGTACGTGCTGGCCGTGGGCAACCAGGTAAACGAGGCTCACCTTCAAACCTTGGTGAGCGCAGGACGGCCTTATGACAATGCATACGCCTACCGCCACCTGTTCAAAGTGTCCGACTACCGTTCATTGGTCACTGGGGTCTTTTACCAAACTGTATCCCGCAAGATTTCCCTGGTGGCGAGGGTGTGATTGGGTAGTGGGAGGGGTTCAGGAATAAAGAGGGTGGGTGGCAGTATAGCACAagctttgattgtttttgttttttgtctgtttttcatgTGAAAGGTATATCTCAACTTAGAAGGTTTTTCATAGTCTCTTACATTTCATAAAAGACAGTAAATGATTGTGTCAGATttcttacaaaatgtttttatgtcacTTATTTGTTTGTAAGTAAAGCGATTAACCGAGTTTTTACAGATTACGTTAATATCGGAGATGGCTTCTAGAGCTTTGATTTTACGACTGTGTTAAGTTGTCCATGACTGCCagaaattagcattaaataatatatccACTGTTGAGGGCACGAAACATTTTTAGTGGTAAGGGGCTGAAATCTCTCTGATGTCATCTCTCTTTGATGCTGACTAGAGGTTATAGCACACTGGGCCCAAAATGTTCGTCCGAAATTTTCACATGTTGAAAAATAGATTTGATGTTGTGTCATTCACGTTTTACACACTTGCCTCTGAAACTTTCGATAAAAATGCGAATCAGGTTCGATTATCTGCTTTTTtgatttgtaaaatgcattttgatgaaAAGGATGATGAATgtggaaaaaactgaaaaacacatgtgAGAATTTCCTACACAGTGTGCTATGGCCTTTAGACTATTTAAAACGCAAGTCTTACAAACAGGGTCCAAAATGAAGACATtcttatcaatcaatcaatttatcAATGAACCAATCCTCCacaatatatgtttatatatattgtcaaATATAATTGTAAAGGAATTATTTTGGACCTTGCTTGCTACCAAGTCCAAGCAATTCTTTATTTGCATTAGTCTGTGGTACACTTCTTTgttagcattaaaaataaaacttgaatATAAATTTGGTGCTACCAATGTAAACACTACACTAGCTCCTTTAGTTATTCAAATGCAGGTtactttaaaattgttttaaccAAAGAATTTACCAATAGGCTTCTCATGTCAGAAATGTATTTGAGACCAGCCTCGGGTCTATTGTAAAGGTATTTGAAATAAAGGATGCTACACCCCA

Function

symbol description
col6a1 Acts upstream of or within locomotory behavior and skeletal muscle tissue development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in caudal fin; dermis; mandibular arch skeleton; muscle; and pleuroperitoneal region. Used to study Bethlem myopathy and congenital muscular dystrophy. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A1 (collagen type VI alpha 1 chain).

NR:

description
collagen alpha-1(VI) chain-like isoform X1

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252236.1 True 4271 mRNA 0.48 35 9710265 9740138

Neighbor

gene id symbol gene type direction distance location
tdo2b tdo2b,tdo2,LOC107718213,LOC107715811,LOC107551803,LOC107685956,LOC107573507 coding upstream 10035 9696275 ~ 9700230 (+)
atp13a3 LOC107573662,LOC107715810,LOC107677501,LOC107685957,LOC107551802,LOC107718210 coding upstream 16022 9660561 ~ 9694243 (+)
tmem44 LOC107685958,LOC107718212,LOC107715772,LOC107551791 coding upstream 51923 9649925 ~ 9658342 (+)
lsg1 lsg1,LOC107573872,LOC107677512,LOC107551801,LOC107685959 coding upstream 60559 9644718 ~ 9649706 (+)
xxylt1 xxylt1,LOC107677510,LOC107715806,LOC107718247,LOC107685961,LOC107581703 coding upstream 130910 9540559 ~ 9579355 (+)
col6a2 col6a2,LOC107573124,LOC107715814,LOC107677497,LOC107685953,LOC107718216 coding downstream 10739 9750877 ~ 9764694 (+)
phka2 phka2,LOC107718215,LOC107715813,LOC107685996,LOC107677496,LOC107573346 coding downstream 25031 9765169 ~ 9780739 (+)
si:ch211-227n13.3 NA coding downstream 40993 9781131 ~ 9784905 (+)
nxph2b nxph2b,LOC107686003,LOC107551792,LOC107715780,LOC107572939,LOC107687746,LOC107718217 coding downstream 44902 9785040 ~ 9790626 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652 coding downstream 130116 9870254 ~ 9879207 (+)
G80347 NA non-coding upstream 116454 9593255 ~ 9593811 (+)
G80346 NA non-coding upstream 118053 9591978 ~ 9592212 (+)
G80344 NA non-coding upstream 122804 9587200 ~ 9587461 (+)
G80343 NA non-coding upstream 123813 9586210 ~ 9586452 (+)
G80341 NA non-coding upstream 127078 9582750 ~ 9583187 (+)
G80523 NA non-coding downstream 345216 10085354 ~ 10091837 (+)
G80531 dennd4a,LOC107596978 non-coding downstream 499707 10239845 ~ 10243421 (+)
G80525 NA non-coding downstream 503730 10243868 ~ 10244071 (+)
G80509 NA non-coding downstream 581532 10321670 ~ 10322338 (+)
G80511 NA non-coding downstream 585512 10325650 ~ 10331888 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 170144 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 284963 9422950 ~ 9425302 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 731024 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 828609 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 831277 8875288 ~ 8878988 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 726484 10466622 ~ 10471187 (+)
G80638 NA other downstream 900994 10641132 ~ 10661970 (+)
G80761 NA other downstream 1482209 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 1765515 11505653 ~ 11507771 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 1784885 11525023 ~ 11527042 (+)

Expression


Co-expression Network