thop1 (thop1,LOC107568058,LOC107658499,LOC107592556,LOC107730481)


Basic Information

Item Value
gene id thop1
gene name thop1,LOC107568058,LOC107658499,LOC107592556,LOC107730481
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3761546 ~ 3769572 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043252330.1
gtcgCAGAAGTGTTCAACCAATTGCAGGCACCATTGAAGATCATGTGACCGGAGCAGGAAGCGTAAGTGAAGCGGCTATTATAGGTCCTTTGAATCATTATACACGCGGTGTTTCTGACCGACTGAGAGGAAAATGGCACCCACAGGTGAAGTTGTGTTTGGCTCTGGGGACCGGGTCTGTGATGACAACCGCTTGCACTGGGATCTCTCTCCCGACCGGATCCAGCAGCTTACCGAAGAGCTTATTGCCAAGACCAAAAAGGTGTATGACATGGTCGGAGAGCTGGACTTGTCCAGTGTCACCTATGAGAACACCCTCAAGGCCCTTGCTGATGTGGAAGTGGAGTACACAGTTCAGCGGAACATGCTCGATTTCCCTCAGCATGTGTCCCCCTGTAAGGATGTCCGTACGGCCAGCACTGACGCCGATAAGAAGCTTTCAGAGTTCGATGTGGAGATGAGTATGAGAGAGGATGTTTATCAGAGAATCGTGGCACTGGGGGAGAAGCTCTCGGATGAGAGTTTAACCCTTGAGGCCAAGCGTTACATGGAAAGACTCGTTAAACTTGGCAAAAGAAACGGCCTTCATCTTCCCAAAGATACGCAGGAGGAGATCAAAAAGATCAAGAAAAAAATGAGCACTATGTGTATCGATTTCAACAAACACCTGAATGAAGATACAACTTGCCTCCATTTCTCTCGTGAGGAACTCGGTGGGCTTCCCGAGGATTTCCTTAACTCTCTGGAGAAGGATGACTCTGGAAAACTAAAGCTCACTCTGAAGTATCCTCATTACTTCCCCACCATGAAGAAATGCTTCGTCCCAGAGACACGAAAGAAATTGGAGGAGGCTTTCAACTCGCGTTGCAAAGAGGAGAACTCTGCTATCCTGAAGGAGCTTGTAGAGTTGCGCTCTCAGAAGAGTAGCCTGCTGGGCTTCAGTACTCACGCCGACTTTGTGCTCGAGATGAATATGGCCAAGACCTCCAAGACGGTTGCAACTTTCCTTGAGGATCTGGCCCTTAAACTGAAGCCCCTGGGTGAGCAGGAGAGGGCTGTGATCCTGAAGCTGAAGGAACAGGAGAGTCAGAAGAGGAACCTGCCCTTCACCGGAGAGCTCCACGCCTGGGACACGCGCTACTACATGACCCAAGTGGAGGAGACTCAGTATGCAGTGGATCAGAACCAACTCAAGGAGTATTTCCCAATGGAGGTAGTGACCAAGGGCCTGCTGGACATCTATCAAGAGCTGCTCAATCTCACCTTCCAGCAGGTGGAGGGCGCACCTGTCTGGCATGATGATGTTACACTGTACTGTGTTAAAGACCGCAGCTCCAGCCAGGTCGTGGGCCAATTTTATCTGGATCTTTTCCCCAGGGAGGGGAAGTACGGCCATGCCGCATGCTTTGGCCTGCAGCCCGGTTGTTTGCTTCCAGATGGGACCAGGCAGATGGCAGTGGCTGCCATGGTGGCTAACTTCAGCAAGCCCACCGCTGACGCACCGTCCCTGCTGCAGCATGATGAAGTTGAAACCTACTTCCATGAGTTTGGACATGTGATGCACCAGCTTTGTGCTCAGGCCGACTTTGCAATGTTCAGCGGGACTCATGTGGAGAGGGATTTTGTGGAAGCTCCGTCTCAGATGTTGGAGAACTGGGTCTGGGAGAAGGAGCCCCTGCAACGCATGTCCAAGCACTACAAAACAGGAAACCCCATTCCAGAGGAGCTTCTTGAGAAACTCATCAAGTCTAGACTTGCTAACACAGGACTGTTTAATTTAAGACAGATTGTTCTGGCTAAGGTGGACCAGGCTTTGCACACAAAGAGTGGGCTTGACCCGGCTGAGGAATATGCCAGACTTTGCCTGGACCTCCTGGGAATTCCTTCTTCACCAGggaCAAACATGCCTGCTACCTTTGGTCACCTGGCAGGAGGATATGATGCTCAGTACTACGGTTACCTTTGGAGTGAAGTCTTCTCCATGGATATGTTCTATGCCCGTTTCAAACAAGAGGGAATCATGGACCCTAAGGTGGGTCTGGACTACAGGAAGTGCATTCTAAAGCCTGGAGGATCTGAGGACGCTGCTGACATGTTAAAGAAGTTCCTGGGAAGAGAACCCAAGCAGGATGCTTTCCTCCTCAGCAAAGGACTCACGGTTGAGCTGCAGCCAGGCAAGCCCTGCGCCTGCTGACTGCCTGAATGTTAGGCTAAGCACTGAAAGCCTCAGACTGATACctccttaataaaaaaaaaaccaaaaagctcATACACTTATCACACATTCTCTCAACCCTGCACTTGTGCAAAGAGCTTTCACTATGAAAGTTAGaagcattgttttaaaattgaaaattgtaTTGACAtctgtctaaaaaaaatatatatatacaaatga

Function

symbol description
thop1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in lens. Orthologous to human THOP1 (thimet oligopeptidase 1).

NR:

description
PREDICTED: thimet oligopeptidase-like isoform X1

GO: NA

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043252330.1 True 2398 mRNA 0.50 13 3761546 3769572

Neighbor

gene id symbol gene type direction distance location
tmem38a tmem38a,LOC107702305,LOC107730482,LOC107658508,LOC107751025 coding upstream 1853 3752956 ~ 3759693 (+)
LOC122353704 LOC107568056,LOC107730479,LOC107657995 coding upstream 30771 3725260 ~ 3730775 (+)
cpne5b cpne5b,LOC107680428,LOC107555996,LOC107751002,LOC107699334,LOC107101079,LOC105027122,LOC107385564 coding upstream 104257 3543698 ~ 3657289 (+)
kif21b kif21b,LOC107592560,LOC107680414 coding upstream 229373 3467547 ~ 3532173 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding upstream 309405 3415053 ~ 3452141 (+)
reep6 reep6,LOC107698004,LOC107745351,LOC107556177,LOC107658751,LOC107710439 coding downstream 22333 3791905 ~ 3795946 (+)
LOC122354262 si:ch73-238c9.1,LOC107710444,LOC107658759,LOC107592584,LOC107745343 coding downstream 83040 3852612 ~ 3854297 (+)
trnaq-cug_18 NA coding downstream 137944 3907516 ~ 3907588 (+)
LOC122354347 LOC107710444,LOC107658759,LOC107745343 coding downstream 150492 3920064 ~ 3921062 (+)
diras1a diras1a,diras1,LOC107592551,LOC107669021,LOC107745338,LOC108437290,LOC100707435,LOC105906138,LOC108236225 coding downstream 183431 3953003 ~ 3959229 (+)
G79039 NA non-coding upstream 12060 3748587 ~ 3749486 (+)
LOC122353534 NA non-coding upstream 14055 3746093 ~ 3747491 (+)
LOC122354704 NA non-coding upstream 14534 3746927 ~ 3747012 (+)
LOC122354703 NA non-coding upstream 14804 3746650 ~ 3746742 (+)
G79022 NA non-coding upstream 35455 3704241 ~ 3726091 (+)
G79037 LOC107745340,LOC107698002,LOC107556194,LOC107710448,LOC107592552,LOC107658524 non-coding downstream 30901 3800473 ~ 3858370 (+)
G79051 NA non-coding downstream 113234 3882806 ~ 3886949 (+)
G79053 NA non-coding downstream 149265 3918837 ~ 3919429 (+)
G79144 NA non-coding downstream 409970 4179542 ~ 4294755 (+)
G79187 LOC107560418,LOC107560425 non-coding downstream 640542 4410114 ~ 4412128 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other upstream 370317 3386258 ~ 3391229 (+)
LOC122353713 LOC107714487,LOC107555999 other upstream 399888 3358210 ~ 3361658 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 488927 3270199 ~ 3272619 (+)
G78790 NA other upstream 934752 2825539 ~ 2826794 (+)
G78763 NA other upstream 1081404 2678135 ~ 2680142 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 1983 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 14392 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 26834 3796406 ~ 3929528 (+)
adgrl2a adgrl2a,adgrl2 other downstream 291357 4060929 ~ 4152591 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other downstream 598853 4368425 ~ 4375388 (+)

Expression


Co-expression Network